RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 OR5K1Q8NHB7 308 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 TNFAIP8L1Q8WVP5 186 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 OR52B2Q96RD2 323 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 CHCHD7Q9BUK0 85 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 MS4A8Q9BY19 250 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 VCX3BQ9H321 246 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 XPNPEP1Q9NQW7 623 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 CTNNBIP1Q9NSA3 81 aaPredicted RBP2.22□□□□□ -2.05
USP40-204ENST00000427947 RWDD2AQ9UIY3 292 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 POLR1DQ9Y2S0 133 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 UNC13BO14795 1591 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP2.22□□□□□ -2.05
USP40-204ENST00000427947 CLUHO75153 1309 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 WDR97A6NE52 1622 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 BTNL10A8MVZ5 291 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 COPEO14579 308 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 TCF21O43680 179 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 ZFYVE9O95405 1425 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 CNIH1O95406 144 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 ATP5G1P05496 136 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 IL3P08700 152 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 MYL12AP19105 171 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 G0S2P27469 103 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 MIPP30301 263 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 SULT1A1P50225 295 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 IDH3GP51553 393 aaPredicted RBP2.21□□□□□ -2.06
USP40-204ENST00000427947 OR4D2P58180 307 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 ADAMTS12P58397 1594 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 KRTAP10-1P60331 282 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 DAD1P61803 113 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 DEFA6Q01524 100 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 BTN1A1Q13410 526 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 LRRC75BQ2VPJ9 315 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 AKIRIN2Q53H80 203 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 N4BP2L1Q5TBK1 243 aaPredicted RBP2.21□□□□□ -2.06
USP40-204ENST00000427947 LAIR2Q6ISS4 152 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 SLC35G3Q8N808 338 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 TMEM161BQ8NDZ6 487 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 ZNF555Q8NEP9 628 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 OR2M3Q8NG83 312 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 OR1M1Q8NGA1 313 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 SPPL2BQ8TCT7 592 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 ASB17Q8WXJ9 295 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 RBPMSQ93062 196 aaKnown RBP2.21□□□□□ -2.06
USP40-204ENST00000427947 SLC25A46Q96AG3 418 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 APOBEC3DQ96AK3 386 aaPredicted RBP2.21□□□□□ -2.06
USP40-204ENST00000427947 OPTNQ96CV9 577 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 PRO3102Q9H379 93 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 STOML2Q9UJZ1 356 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 PRELID1Q9Y255 219 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 ARL2BPQ9Y2Y0 163 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 S4R3C0 116 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 DOPEY2Q9Y3R5 2298 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 ROBO1Q9Y6N7 1651 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 DISP1Q96F81 1524 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 A0A1W2PP64 1363 aa2.21□□□□□ -2.06
USP40-204ENST00000427947 SHROOM2Q13796 1616 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 SVEP1Q4LDE5 3571 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 TRIOO75962 3097 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 PTPRGP23470 1445 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 IGHV1-3A0A0C4DH29 117 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 TEX50A0A1B0GTY4 177 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 K7EM74 188 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 K7EPK0 472 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 CDRT1O95170 752 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 SERPINA1P01009 418 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 NRASP01111 189 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 HRASP01112 189 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 KRASP01116 189 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 OR13C7P0DN81 318 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 OR12D1P0DN82 309 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 GABRA3P34903 492 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 CAPZBP47756 277 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 CDK9P50750 372 aaKnown RBP2.2□□□□□ -2.06
USP40-204ENST00000427947 SNAP25P60880 206 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 SPCS3P61009 180 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 RANP62826 216 aaKnown RBP2.2□□□□□ -2.06
USP40-204ENST00000427947 CCL7P80098 99 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 CASP8Q14790 479 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 HACD4Q5VWC8 232 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 SYPL2Q5VXT5 272 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 HIST2H3AQ71DI3 136 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 VN1R4Q7Z5H5 301 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 NT5DC3Q86UY8 548 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 GPR32P1Q8NGA4 272 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 OR9I1Q8NGQ6 314 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 ITLN2Q8WWU7 325 aaPredicted RBP2.2□□□□□ -2.06
USP40-204ENST00000427947 RTN4IP1Q8WWV3 396 aaPredicted RBP2.2□□□□□ -2.06
USP40-204ENST00000427947 IMP4Q96G21 291 aaKnown RBP2.2□□□□□ -2.06
USP40-204ENST00000427947 REEP6Q96HR9 211 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 PHB2Q99623 299 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 EBNA1BP2Q99848 306 aaKnown RBP2.2□□□□□ -2.06
USP40-204ENST00000427947 EIF5A2Q9GZV4 153 aaKnown RBP2.2□□□□□ -2.06
USP40-204ENST00000427947 ZSCAN16Q9H4T2 348 aaPredicted RBP2.2□□□□□ -2.06
USP40-204ENST00000427947 KCNIP2Q9NS61 270 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 TMEM38BQ9NVV0 291 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 LINC00527Q9UJ94 153 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 DNAJC12Q9UKB3 198 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 PBRM1Q86U86 1689 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 DNMT1P26358 1616 aaKnown RBP2.2□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms