RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 FGF8P55075 233 aaPredicted RBP4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 SOX8P57073 446 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 RANP62826 216 aaKnown RBP4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 RPP30P78346 268 aaKnown RBP4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 HTD2P86397 168 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 PLGLB1Q02325 96 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 OR2M7Q8NG81 312 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 OR1K1Q8NGR3 316 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 MISP3Q96FF7 219 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 YPEL2Q96QA6 119 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 TRGV8A0A0C4DH27 118 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 A0A1W2PR80 420 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 ZNF503-AS2A6NEH8 195 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 PRSS46E5RG02 174 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 CDIPTO14735 213 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 IAPPP10997 89 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 TDGF1P13385 188 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 TNFSF4P23510 183 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 IL3RAP26951 378 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 CDC34P49427 236 aaPredicted RBP4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 PPP1CBP62140 327 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 Q0VG73 95 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 FFAR4Q5NUL3 377 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 SCCPDHQ8NBX0 429 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 DTD1Q8TEA8 209 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 RDH5Q92781 318 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 GPHA2Q96T91 129 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 PCGF1Q9BSM1 259 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 ELOVL5Q9NYP7 299 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 A0A0C4DFX4 3053 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 SAA2-SAA4A0A096LPE2 208 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 PINLYPA6NC86 204 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 NEURL1O76050 574 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 NGFP01138 241 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 REG1AP05451 166 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 STAG3L2P0CL84 134 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 STAG3L3P0CL85 134 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 NDUFB7P17568 137 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 BTF3P20290 206 aaKnown RBP4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 NPPCP23582 126 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 ACP1P24666 158 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 ATP5IP56385 69 aaPredicted RBP4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 BRWD1-AS2P59051 145 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 P2RY6Q15077 328 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 OR1C1Q15619 314 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 UNQ6494/PRO21346Q6UXR6 183 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 TEX43Q6ZNM6 134 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 WDR86Q86TI4 376 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 ZNF709Q8N972 641 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 NAXEQ8NCW5 288 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 OR4F5Q8NH21 305 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 GALMQ96C23 342 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 OR4F4Q96R69 305 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 TRAPPC2LQ9UL33 140 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 C15orf62A8K5M9 175 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 C11orf94C9JXX5 98 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 CER1O95813 267 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 CLDN1O95832 211 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 ADH4P08319 380 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 RD3LP0DJH9 198 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 IDH3GP51553 393 aaPredicted RBP4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 MRPL49Q13405 166 aaKnown RBP4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 C4orf17Q53FE4 359 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 PDZD11Q5EBL8 140 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 DCAF10Q5QP82 559 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 FAM90A1Q86YD7 464 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 TUSC5Q8IXB3 177 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 C5orf30Q96GV9 206 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 SFXN3Q9BWM7 321 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 PPP1R3CQ9UQK1 317 aa4.8□□□□□ -1.64
CCDC88A-203ENST00000412148 M0R143 59 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 ATXN7O15265 892 aaPredicted RBP4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 RHBDL1O75783 438 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 CXorf1O96002 111 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 KRASP01116 189 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 ZNF883P0CG24 379 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 KIR2DS2P43631 304 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 ELLP55199 621 aaPredicted RBP4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 ERVS71-1P61550 626 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 GNB1P62873 340 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 TBC1D28Q2M2D7 210 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 DCAF12Q5T6F0 453 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 FBXW9Q5XUX1 488 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 SLC23A3Q6PIS1 610 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 PNKDQ8N490 385 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 RPUSD4Q96CM3 377 aaKnown RBP4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 SFRP2Q96HF1 295 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 PRO1933Q9H354 126 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 SLC25A22Q9H936 323 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 FKBP11Q9NYL4 201 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 FUT9Q9Y231 359 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 LSM4Q9Y4Z0 139 aaKnown RBP4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 A0A1W2PPQ1 181 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 TCAPO15273 167 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 PAGE4O60829 102 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 SMPD2O60906 423 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 TRAPPC6AO75865 159 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 TNFSF13O75888 250 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 NXPH3O95157 252 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 MT-ND6P03923 174 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms