RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 NAA38Q9BRA0 125 aaKnown RBP10.24□□□□□ -0.77
HMGB1-206ENST00000405805 A0A0G2JMM0 328 aa10.24□□□□□ -0.77
HMGB1-206ENST00000405805 A0A0U1RQV5 110 aa10.24□□□□□ -0.77
HMGB1-206ENST00000405805 A0A1W2PPB8 328 aa10.24□□□□□ -0.77
HMGB1-206ENST00000405805 A0A1W2PRS3 328 aa10.24□□□□□ -0.77
HMGB1-206ENST00000405805 KIR3DP1A8MWS1 328 aa10.24□□□□□ -0.77
HMGB1-206ENST00000405805 DCAF10Q5QP82 559 aa10.24□□□□□ -0.77
HMGB1-206ENST00000405805 FAM27BQ5VT28 67 aa10.24□□□□□ -0.77
HMGB1-206ENST00000405805 FGFBP3Q8TAT2 258 aa10.24□□□□□ -0.77
HMGB1-206ENST00000405805 GSX1Q9H4S2 264 aaPredicted RBP10.24□□□□□ -0.77
HMGB1-206ENST00000405805 COLQQ9Y215 455 aaPredicted RBP10.24□□□□□ -0.77
HMGB1-206ENST00000405805 IGKV1-12A0A0C4DH73 117 aa10.23□□□□□ -0.77
HMGB1-206ENST00000405805 TMEM238C9JI98 176 aa10.23□□□□□ -0.77
HMGB1-206ENST00000405805 K7EQM0 130 aa10.23□□□□□ -0.77
HMGB1-206ENST00000405805 ITGB1BP1O14713 200 aa10.23□□□□□ -0.77
HMGB1-206ENST00000405805 SRSF10O75494 262 aaKnown RBP10.23□□□□□ -0.77
HMGB1-206ENST00000405805 IGKV1D-12P01611 117 aa10.23□□□□□ -0.77
HMGB1-206ENST00000405805 THBS3P49746 956 aa10.23□□□□□ -0.77
HMGB1-206ENST00000405805 CAMPP49913 170 aa10.23□□□□□ -0.77
HMGB1-206ENST00000405805 MRPL49Q13405 166 aaKnown RBP10.23□□□□□ -0.77
HMGB1-206ENST00000405805 LIME1Q9H400 295 aa10.23□□□□□ -0.77
HMGB1-206ENST00000405805 PROB1E7EW31 1015 aa10.23□□□□□ -0.77
HMGB1-206ENST00000405805 SPEM2Q0P670 501 aa10.23□□□□□ -0.77
HMGB1-206ENST00000405805 IL24Q13007 206 aa10.23□□□□□ -0.77
HMGB1-206ENST00000405805 DCAF12Q5T6F0 453 aa10.23□□□□□ -0.77
HMGB1-206ENST00000405805 KIAA1456Q9P272 454 aa10.23□□□□□ -0.77
HMGB1-206ENST00000405805 CDIPTO14735 213 aa10.23□□□□□ -0.77
HMGB1-206ENST00000405805 SYNGR2O43760 224 aa10.23□□□□□ -0.77
HMGB1-206ENST00000405805 CER1O95813 267 aa10.23□□□□□ -0.77
HMGB1-206ENST00000405805 CD5P06127 495 aa10.23□□□□□ -0.77
HMGB1-206ENST00000405805 PSG1P11464 419 aa10.23□□□□□ -0.77
HMGB1-206ENST00000405805 SELENOHQ8IZQ5 122 aaKnown RBP10.23□□□□□ -0.77
HMGB1-206ENST00000405805 STRADBQ9C0K7 418 aa10.23□□□□□ -0.77
HMGB1-206ENST00000405805 SRD5A3Q9H8P0 318 aa10.23□□□□□ -0.77
HMGB1-206ENST00000405805 RPRMQ9NS64 109 aa10.23□□□□□ -0.77
HMGB1-206ENST00000405805 NUP210Q8TEM1 1887 aaPredicted RBP10.23□□□□□ -0.77
HMGB1-206ENST00000405805 IGKV1D-13A0A0B4J2D9 117 aa10.22□□□□□ -0.77
HMGB1-206ENST00000405805 IGKV1-13P0DP09 117 aa10.22□□□□□ -0.77
HMGB1-206ENST00000405805 DEFA4P12838 97 aa10.22□□□□□ -0.77
HMGB1-206ENST00000405805 PPOXP50336 477 aa10.22□□□□□ -0.77
HMGB1-206ENST00000405805 HIKESHIQ53FT3 197 aa10.22□□□□□ -0.77
HMGB1-206ENST00000405805 LHFPL1Q86WI0 220 aa10.22□□□□□ -0.77
HMGB1-206ENST00000405805 MUCL1Q96DR8 90 aa10.22□□□□□ -0.77
HMGB1-206ENST00000405805 ACY3Q96HD9 319 aa10.22□□□□□ -0.77
HMGB1-206ENST00000405805 LOXL4Q96JB6 756 aa10.22□□□□□ -0.77
HMGB1-206ENST00000405805 HES7Q9BYE0 225 aa10.22□□□□□ -0.77
HMGB1-206ENST00000405805 TMEM222Q9H0R3 208 aa10.22□□□□□ -0.77
HMGB1-206ENST00000405805 IGKV1-27A0A075B6S5 117 aa10.22□□□□□ -0.77
HMGB1-206ENST00000405805 CDS2O95674 445 aa10.22□□□□□ -0.77
HMGB1-206ENST00000405805 SLC38A11Q08AI6 406 aa10.22□□□□□ -0.77
HMGB1-206ENST00000405805 AMMECR1LQ6DCA0 310 aa10.22□□□□□ -0.77
HMGB1-206ENST00000405805 OR10P1Q8NGE3 313 aa10.22□□□□□ -0.77
HMGB1-206ENST00000405805 PINX1Q96BK5 328 aaKnown RBP10.22□□□□□ -0.77
HMGB1-206ENST00000405805 BOD1Q96IK1 185 aa10.22□□□□□ -0.77
HMGB1-206ENST00000405805 USF3Q68DE3 2245 aa10.22□□□□□ -0.77
HMGB1-206ENST00000405805 TRBV6-7A0A0A0MS04 114 aa10.22□□□□□ -0.77
HMGB1-206ENST00000405805 IGHV2-5P01817 119 aa10.22□□□□□ -0.77
HMGB1-206ENST00000405805 CSN3P07498 182 aa10.22□□□□□ -0.77
HMGB1-206ENST00000405805 FKBP2P26885 142 aaKnown RBP10.22□□□□□ -0.77
HMGB1-206ENST00000405805 CEBPDP49716 269 aaPredicted RBP10.22□□□□□ -0.77
HMGB1-206ENST00000405805 FFAR4Q5NUL3 377 aa10.22□□□□□ -0.77
HMGB1-206ENST00000405805 H2BFWTQ7Z2G1 175 aa10.22□□□□□ -0.77
HMGB1-206ENST00000405805 DEFB108BQ8NET1 73 aa10.22□□□□□ -0.77
HMGB1-206ENST00000405805 NFAM1Q8NET5 270 aaPredicted RBP10.22□□□□□ -0.77
HMGB1-206ENST00000405805 DNASE2BQ8WZ79 361 aa10.22□□□□□ -0.77
HMGB1-206ENST00000405805 MOB3AQ96BX8 217 aa10.22□□□□□ -0.77
HMGB1-206ENST00000405805 C1orf147Q96MC9 270 aaPredicted RBP10.22□□□□□ -0.77
HMGB1-206ENST00000405805 GPR35Q9HC97 309 aa10.22□□□□□ -0.77
HMGB1-206ENST00000405805 ENY2Q9NPA8 101 aa10.22□□□□□ -0.77
HMGB1-206ENST00000405805 CLN8Q9UBY8 286 aa10.22□□□□□ -0.77
HMGB1-206ENST00000405805 LAMA1P25391 3075 aa10.22□□□□□ -0.77
HMGB1-206ENST00000405805 ABCA4P78363 2273 aa10.22□□□□□ -0.77
HMGB1-206ENST00000405805 IMMP2LQ96T52 175 aa10.22□□□□□ -0.77
HMGB1-206ENST00000405805 THADAQ6YHU6 1953 aa10.21□□□□□ -0.77
HMGB1-206ENST00000405805 GCH1P30793 250 aa10.21□□□□□ -0.77
HMGB1-206ENST00000405805 OR10W1Q8NGF6 305 aa10.21□□□□□ -0.77
HMGB1-206ENST00000405805 CHODLQ9H9P2 273 aa10.21□□□□□ -0.77
HMGB1-206ENST00000405805 CHCHD2Q9Y6H1 151 aaPredicted RBP10.21□□□□□ -0.77
HMGB1-206ENST00000405805 G6PCP35575 357 aa10.21□□□□□ -0.78
HMGB1-206ENST00000405805 UBE2V1Q13404 147 aa10.21□□□□□ -0.78
HMGB1-206ENST00000405805 SLC35E3Q7Z769 313 aa10.21□□□□□ -0.78
HMGB1-206ENST00000405805 ZNF441Q8N8Z8 693 aa10.21□□□□□ -0.78
HMGB1-206ENST00000405805 GPR146Q96CH1 333 aa10.21□□□□□ -0.78
HMGB1-206ENST00000405805 ARRDC1-AS1Q9H2J1 176 aa10.21□□□□□ -0.78
HMGB1-206ENST00000405805 OR4C12Q96R67 309 aa10.21□□□□□ -0.78
HMGB1-206ENST00000405805 PDE6DO43924 150 aa10.2□□□□□ -0.78
HMGB1-206ENST00000405805 HRASP01112 189 aa10.2□□□□□ -0.78
HMGB1-206ENST00000405805 CTXN2P0C2S0 81 aa10.2□□□□□ -0.78
HMGB1-206ENST00000405805 FOXG1P55316 489 aaPredicted RBP10.2□□□□□ -0.78
HMGB1-206ENST00000405805 MRGPRDQ8TDS7 321 aa10.2□□□□□ -0.78
HMGB1-206ENST00000405805 BDP1A6H8Y1 2624 aa10.2□□□□□ -0.78
HMGB1-206ENST00000405805 PAGE4O60829 102 aa10.2□□□□□ -0.78
HMGB1-206ENST00000405805 ACTL6BO94805 426 aa10.2□□□□□ -0.78
HMGB1-206ENST00000405805 SLC25A6P12236 298 aa10.2□□□□□ -0.78
HMGB1-206ENST00000405805 MRPL30Q8TCC3 161 aaKnown RBP10.2□□□□□ -0.78
HMGB1-206ENST00000405805 WFDC12Q8WWY7 111 aa10.2□□□□□ -0.78
HMGB1-206ENST00000405805 ACTR3CQ9C0K3 210 aaPredicted RBP10.2□□□□□ -0.78
HMGB1-206ENST00000405805 FNDC4Q9H6D8 234 aaPredicted RBP10.2□□□□□ -0.78
HMGB1-206ENST00000405805 SLC22A20A6NK97 555 aa10.2□□□□□ -0.78
HMGB1-206ENST00000405805 TIMM8AO60220 97 aaPredicted RBP10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 132.2 ms