RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 RBM38Q9H0Z9 239 aaKnown RBP17.16■□□□□ 0.34
CLN3-207ENST00000395653 TRRAPQ9Y4A5 3859 aa17.16■□□□□ 0.34
CLN3-207ENST00000395653 CCDC160A6NGH7 325 aa17.15■□□□□ 0.34
CLN3-207ENST00000395653 AP4M1O00189 453 aa17.15■□□□□ 0.34
CLN3-207ENST00000395653 PPYP01298 95 aa17.15■□□□□ 0.34
CLN3-207ENST00000395653 HLA-DRB1P01911 266 aa17.15■□□□□ 0.34
CLN3-207ENST00000395653 CD28P10747 220 aa17.15■□□□□ 0.34
CLN3-207ENST00000395653 AADACP22760 399 aa17.15■□□□□ 0.34
CLN3-207ENST00000395653 OVCH2Q7RTZ1 564 aa17.15■□□□□ 0.34
CLN3-207ENST00000395653 FLYWCH2Q96CP2 140 aaKnown RBP17.15■□□□□ 0.34
CLN3-207ENST00000395653 SLIRPQ9GZT3 109 aaKnown RBP17.15■□□□□ 0.34
CLN3-207ENST00000395653 ZNF107Q9UII5 783 aaPredicted RBP17.15■□□□□ 0.34
CLN3-207ENST00000395653 RBMX2Q9Y388 322 aaKnown RBP17.15■□□□□ 0.34
CLN3-207ENST00000395653 FBN3Q75N90 2809 aa17.15■□□□□ 0.34
CLN3-207ENST00000395653 RRHO14718 337 aa17.14■□□□□ 0.33
CLN3-207ENST00000395653 SPDEFO95238 335 aa17.14■□□□□ 0.33
CLN3-207ENST00000395653 IGLV2-14P01704 120 aa17.14■□□□□ 0.33
CLN3-207ENST00000395653 RRASP10301 218 aa17.14■□□□□ 0.33
CLN3-207ENST00000395653 MSMO1Q15800 293 aa17.14■□□□□ 0.33
CLN3-207ENST00000395653 C2orf68Q2NKX9 166 aa17.14■□□□□ 0.33
CLN3-207ENST00000395653 STPG2Q8N412 459 aa17.14■□□□□ 0.33
CLN3-207ENST00000395653 DDB2Q92466 427 aa17.14■□□□□ 0.33
CLN3-207ENST00000395653 NOL4LQ96MY1 436 aaPredicted RBP17.14■□□□□ 0.33
CLN3-207ENST00000395653 TSNAXQ99598 290 aaKnown RBP17.14■□□□□ 0.33
CLN3-207ENST00000395653 HSPB9Q9BQS6 159 aa17.14■□□□□ 0.33
CLN3-207ENST00000395653 EHFQ9NZC4 300 aa17.14■□□□□ 0.33
CLN3-207ENST00000395653 PSMB11A5LHX3 300 aa17.13■□□□□ 0.33
CLN3-207ENST00000395653 LINC01548A6NM66 108 aa17.13■□□□□ 0.33
CLN3-207ENST00000395653 LINC00473A8K010 186 aa17.13■□□□□ 0.33
CLN3-207ENST00000395653 ZNF701M0R085 212 aaPredicted RBP17.13■□□□□ 0.33
CLN3-207ENST00000395653 RCVRNP35243 200 aa17.13■□□□□ 0.33
CLN3-207ENST00000395653 CBX3Q13185 183 aa17.13■□□□□ 0.33
CLN3-207ENST00000395653 DYRK1AQ13627 763 aa17.13■□□□□ 0.33
CLN3-207ENST00000395653 RTL8BQ17RB0 113 aa17.13■□□□□ 0.33
CLN3-207ENST00000395653 LIN54Q6MZP7 749 aa17.13■□□□□ 0.33
CLN3-207ENST00000395653 OR4X2Q8NGF9 303 aa17.13■□□□□ 0.33
CLN3-207ENST00000395653 OR5H2Q8NGV7 314 aa17.13■□□□□ 0.33
CLN3-207ENST00000395653 RSL24D1Q9UHA3 163 aaKnown RBP17.13■□□□□ 0.33
CLN3-207ENST00000395653 ZNF580Q9UK33 172 aa17.13■□□□□ 0.33
CLN3-207ENST00000395653 PKD1L1Q8TDX9 2849 aa17.13■□□□□ 0.33
CLN3-207ENST00000395653 TET2Q6N021 2002 aaPredicted RBP17.13■□□□□ 0.33
CLN3-207ENST00000395653 RFX2P48378 723 aa17.13■□□□□ 0.33
CLN3-207ENST00000395653 RPS16P62249 146 aaKnown RBP17.13■□□□□ 0.33
CLN3-207ENST00000395653 CD83Q01151 205 aa17.13■□□□□ 0.33
CLN3-207ENST00000395653 PSG5Q15238 335 aa17.13■□□□□ 0.33
CLN3-207ENST00000395653 TMEM177Q53S58 311 aa17.13■□□□□ 0.33
CLN3-207ENST00000395653 DHRS11Q6UWP2 260 aa17.13■□□□□ 0.33
CLN3-207ENST00000395653 LYSMD2Q8IV50 215 aa17.13■□□□□ 0.33
CLN3-207ENST00000395653 BVESQ8NE79 360 aa17.13■□□□□ 0.33
CLN3-207ENST00000395653 ABHD1Q96SE0 405 aa17.13■□□□□ 0.33
CLN3-207ENST00000395653 CITED2Q99967 270 aaPredicted RBP17.13■□□□□ 0.33
CLN3-207ENST00000395653 GON7Q9BXV9 100 aa17.13■□□□□ 0.33
CLN3-207ENST00000395653 C6orf62Q9GZU0 229 aaPredicted RBP17.13■□□□□ 0.33
CLN3-207ENST00000395653 FBXL15Q9H469 300 aa17.13■□□□□ 0.33
CLN3-207ENST00000395653 PMP2P02689 132 aa17.12■□□□□ 0.33
CLN3-207ENST00000395653 IGF1P05019 195 aa17.12■□□□□ 0.33
CLN3-207ENST00000395653 HLA-DMAP28067 261 aa17.12■□□□□ 0.33
CLN3-207ENST00000395653 LGALS7P47929 136 aa17.12■□□□□ 0.33
CLN3-207ENST00000395653 SLC35B1P78383 322 aa17.12■□□□□ 0.33
CLN3-207ENST00000395653 ZNF660Q6AZW8 331 aaPredicted RBP17.12■□□□□ 0.33
CLN3-207ENST00000395653 HIST2H2BDQ6DRA6 164 aa17.12■□□□□ 0.33
CLN3-207ENST00000395653 KCTD9Q7L273 389 aa17.12■□□□□ 0.33
CLN3-207ENST00000395653 NDUFA11Q86Y39 141 aa17.12■□□□□ 0.33
CLN3-207ENST00000395653 SECTM1Q8WVN6 248 aa17.12■□□□□ 0.33
CLN3-207ENST00000395653 HSD17B10Q99714 261 aaKnown RBP17.12■□□□□ 0.33
CLN3-207ENST00000395653 NXF2Q9GZY0 626 aaKnown RBP17.12■□□□□ 0.33
CLN3-207ENST00000395653 LINC00527Q9UJ94 153 aa17.12■□□□□ 0.33
CLN3-207ENST00000395653 IGHV7-81A0A0B4J1V7 117 aa17.11■□□□□ 0.33
CLN3-207ENST00000395653 HRH1P35367 487 aa17.11■□□□□ 0.33
CLN3-207ENST00000395653 EIF4EBP1Q13541 118 aaPredicted RBP17.11■□□□□ 0.33
CLN3-207ENST00000395653 PLGLAQ15195 96 aa17.11■□□□□ 0.33
CLN3-207ENST00000395653 TCTEX1D4Q5JR98 221 aa17.11■□□□□ 0.33
CLN3-207ENST00000395653 C10orf99Q6UWK7 81 aa17.11■□□□□ 0.33
CLN3-207ENST00000395653 ZBTB34Q8NCN2 500 aa17.11■□□□□ 0.33
CLN3-207ENST00000395653 OR51J1Q9H342 316 aa17.11■□□□□ 0.33
CLN3-207ENST00000395653 CCL28Q9NRJ3 127 aa17.11■□□□□ 0.33
CLN3-207ENST00000395653 RABL2AQ9UBK7 228 aaPredicted RBP17.11■□□□□ 0.33
CLN3-207ENST00000395653 METTL1Q9UBP6 276 aaKnown RBP17.11■□□□□ 0.33
CLN3-207ENST00000395653 RABL2BQ9UNT1 228 aa17.11■□□□□ 0.33
CLN3-207ENST00000395653 MGAM2Q2M2H8 2515 aa17.1■□□□□ 0.33
CLN3-207ENST00000395653 CSF1P09603 554 aa17.1■□□□□ 0.33
CLN3-207ENST00000395653 FXYD4P59646 89 aa17.1■□□□□ 0.33
CLN3-207ENST00000395653 HERV-K104P61576 105 aa17.1■□□□□ 0.33
CLN3-207ENST00000395653 MRPS10P82664 201 aaKnown RBP17.1■□□□□ 0.33
CLN3-207ENST00000395653 ZNF66Q6ZN08 573 aa17.1■□□□□ 0.33
CLN3-207ENST00000395653 ZNF329Q86UD4 541 aa17.1■□□□□ 0.33
CLN3-207ENST00000395653 COMMD1Q8N668 190 aa17.1■□□□□ 0.33
CLN3-207ENST00000395653 OR52I2Q8NH67 350 aa17.1■□□□□ 0.33
CLN3-207ENST00000395653 MCFD2Q8NI22 146 aa17.1■□□□□ 0.33
CLN3-207ENST00000395653 DIRAS2Q96HU8 199 aa17.1■□□□□ 0.33
CLN3-207ENST00000395653 HARBI1Q96MB7 349 aa17.1■□□□□ 0.33
CLN3-207ENST00000395653 ZNF2Q9BSG1 426 aaPredicted RBP17.1■□□□□ 0.33
CLN3-207ENST00000395653 SLC5A7Q9GZV3 580 aa17.1■□□□□ 0.33
CLN3-207ENST00000395653 PRELID3BQ9Y3B1 194 aa17.1■□□□□ 0.33
CLN3-207ENST00000395653 VWFP04275 2813 aa17.1■□□□□ 0.33
CLN3-207ENST00000395653 IGLV2-23P01705 113 aa17.09■□□□□ 0.33
CLN3-207ENST00000395653 OPN1MWP04001 364 aa17.09■□□□□ 0.33
CLN3-207ENST00000395653 OPN1MW2P0DN77 364 aa17.09■□□□□ 0.33
CLN3-207ENST00000395653 OPN1MW3P0DN78 364 aa17.09■□□□□ 0.33
CLN3-207ENST00000395653 RPL30P62888 115 aaKnown RBP17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms