RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 RNFT1Q5M7Z0 435 aa10.24□□□□□ -0.77
SYNPO-202ENST00000394243 TTC9CQ8N5M4 171 aa10.24□□□□□ -0.77
SYNPO-202ENST00000394243 OR11H1Q8NG94 326 aa10.24□□□□□ -0.77
SYNPO-202ENST00000394243 OR11H2Q8NH07 326 aa10.24□□□□□ -0.77
SYNPO-202ENST00000394243 SCN8AQ9UQD0 1980 aa10.24□□□□□ -0.77
SYNPO-202ENST00000394243 PIN1P1O15428 100 aa10.23□□□□□ -0.77
SYNPO-202ENST00000394243 TBX6O95947 436 aaPredicted RBP10.23□□□□□ -0.77
SYNPO-202ENST00000394243 SRP19P09132 144 aaKnown RBP10.23□□□□□ -0.77
SYNPO-202ENST00000394243 FCGR2BP31994 310 aaPredicted RBP10.23□□□□□ -0.77
SYNPO-202ENST00000394243 LIMS1P48059 325 aa10.23□□□□□ -0.77
SYNPO-202ENST00000394243 LAIR2Q6ISS4 152 aa10.23□□□□□ -0.77
SYNPO-202ENST00000394243 TEX29Q8N6K0 151 aa10.23□□□□□ -0.77
SYNPO-202ENST00000394243 ERGP11308 486 aa10.23□□□□□ -0.77
SYNPO-202ENST00000394243 TPRX1Q8N7U7 411 aa10.23□□□□□ -0.77
SYNPO-202ENST00000394243 AMELYQ99218 206 aa10.23□□□□□ -0.77
SYNPO-202ENST00000394243 SF3B5Q9BWJ5 86 aaKnown RBP10.23□□□□□ -0.77
SYNPO-202ENST00000394243 MSGN1A6NI15 193 aa10.23□□□□□ -0.77
SYNPO-202ENST00000394243 PPIAL4DF5H284 164 aa10.23□□□□□ -0.77
SYNPO-202ENST00000394243 VENTXO95231 258 aa10.23□□□□□ -0.77
SYNPO-202ENST00000394243 CLDN14O95500 239 aa10.23□□□□□ -0.77
SYNPO-202ENST00000394243 ROM1Q03395 351 aa10.23□□□□□ -0.77
SYNPO-202ENST00000394243 SMAGPQ0VAQ4 97 aa10.23□□□□□ -0.77
SYNPO-202ENST00000394243 PTCRAQ6ISU1 281 aaPredicted RBP10.23□□□□□ -0.77
SYNPO-202ENST00000394243 IL36BQ9NZH7 164 aa10.23□□□□□ -0.77
SYNPO-202ENST00000394243 TRAV8-2A0A0B4J237 113 aa10.23□□□□□ -0.77
SYNPO-202ENST00000394243 LCN2P80188 198 aa10.23□□□□□ -0.77
SYNPO-202ENST00000394243 TMEM108Q6UXF1 575 aa10.23□□□□□ -0.77
SYNPO-202ENST00000394243 A0A087WWC5 75 aa10.23□□□□□ -0.77
SYNPO-202ENST00000394243 ZG16O60844 167 aa10.23□□□□□ -0.77
SYNPO-202ENST00000394243 ANOS1P23352 680 aa10.23□□□□□ -0.77
SYNPO-202ENST00000394243 VCX2Q9H322 139 aa10.23□□□□□ -0.77
SYNPO-202ENST00000394243 GPR35Q9HC97 309 aa10.23□□□□□ -0.77
SYNPO-202ENST00000394243 RPRMQ9NS64 109 aa10.23□□□□□ -0.77
SYNPO-202ENST00000394243 TMEM250H0YL14 139 aa10.23□□□□□ -0.77
SYNPO-202ENST00000394243 KLF4O43474 513 aa10.23□□□□□ -0.77
SYNPO-202ENST00000394243 AGFG2O95081 481 aa10.23□□□□□ -0.77
SYNPO-202ENST00000394243 C8orf88P0DMB2 117 aa10.23□□□□□ -0.77
SYNPO-202ENST00000394243 TM4SF4P48230 202 aa10.23□□□□□ -0.77
SYNPO-202ENST00000394243 DMRTA2Q96SC8 542 aa10.23□□□□□ -0.77
SYNPO-202ENST00000394243 RREB1Q92766 1687 aa10.23□□□□□ -0.77
SYNPO-202ENST00000394243 CABIN1Q9Y6J0 2220 aa10.22□□□□□ -0.77
SYNPO-202ENST00000394243 TMEM187Q14656 261 aa10.22□□□□□ -0.77
SYNPO-202ENST00000394243 GFRALQ6UXV0 394 aa10.22□□□□□ -0.77
SYNPO-202ENST00000394243 APOMO95445 188 aa10.22□□□□□ -0.77
SYNPO-202ENST00000394243 VEGFBP49765 207 aa10.22□□□□□ -0.77
SYNPO-202ENST00000394243 PLSCR2Q9NRY7 297 aa10.22□□□□□ -0.77
SYNPO-202ENST00000394243 K7EQS6 105 aa10.22□□□□□ -0.77
SYNPO-202ENST00000394243 UPK3AO75631 287 aa10.22□□□□□ -0.77
SYNPO-202ENST00000394243 SNAI3Q3KNW1 292 aa10.22□□□□□ -0.77
SYNPO-202ENST00000394243 CITED2Q99967 270 aaPredicted RBP10.22□□□□□ -0.77
SYNPO-202ENST00000394243 ELOVL5Q9NYP7 299 aa10.22□□□□□ -0.77
SYNPO-202ENST00000394243 ATXN7O15265 892 aaPredicted RBP10.22□□□□□ -0.77
SYNPO-202ENST00000394243 CKS1BP61024 79 aa10.22□□□□□ -0.77
SYNPO-202ENST00000394243 FGF12P61328 243 aa10.22□□□□□ -0.77
SYNPO-202ENST00000394243 SELENOTP62341 195 aa10.22□□□□□ -0.77
SYNPO-202ENST00000394243 SRSF3P84103 164 aaKnown RBP10.22□□□□□ -0.77
SYNPO-202ENST00000394243 SPINK14Q6IE38 97 aa10.22□□□□□ -0.77
SYNPO-202ENST00000394243 TNFRSF19Q9NS68 423 aa10.22□□□□□ -0.77
SYNPO-202ENST00000394243 IGKV3D-15A0A087WSY6 115 aa10.22□□□□□ -0.77
SYNPO-202ENST00000394243 TRBV5-7A0A0A0MS05 114 aa10.22□□□□□ -0.77
SYNPO-202ENST00000394243 A0A0U1RQV5 110 aa10.22□□□□□ -0.77
SYNPO-202ENST00000394243 IGKV3-15P01624 115 aa10.22□□□□□ -0.77
SYNPO-202ENST00000394243 GPR183P32249 361 aa10.22□□□□□ -0.77
SYNPO-202ENST00000394243 MEIG1Q5JSS6 88 aa10.22□□□□□ -0.77
SYNPO-202ENST00000394243 HCP5Q6MZN7 132 aa10.22□□□□□ -0.77
SYNPO-202ENST00000394243 PHLDA3Q9Y5J5 127 aa10.22□□□□□ -0.77
SYNPO-202ENST00000394243 ZFP36L2P47974 494 aaKnown RBP10.21□□□□□ -0.77
SYNPO-202ENST00000394243 GLRX5Q86SX6 157 aa10.21□□□□□ -0.77
SYNPO-202ENST00000394243 OR5A1Q8NGJ0 315 aa10.21□□□□□ -0.77
SYNPO-202ENST00000394243 C5orf30Q96GV9 206 aa10.21□□□□□ -0.77
SYNPO-202ENST00000394243 COX14Q96I36 57 aa10.21□□□□□ -0.77
SYNPO-202ENST00000394243 C3AR1Q16581 482 aa10.21□□□□□ -0.77
SYNPO-202ENST00000394243 C1orf100Q5SVJ3 147 aa10.21□□□□□ -0.77
SYNPO-202ENST00000394243 COPS9Q8WXC6 57 aa10.21□□□□□ -0.77
SYNPO-202ENST00000394243 RCC1LQ96I51 464 aaKnown RBP10.21□□□□□ -0.77
SYNPO-202ENST00000394243 TUBA4BQ9H853 241 aa10.21□□□□□ -0.77
SYNPO-202ENST00000394243 NPIPB6E9PJ23 425 aa10.21□□□□□ -0.77
SYNPO-202ENST00000394243 H3BTX0 84 aa10.21□□□□□ -0.77
SYNPO-202ENST00000394243 PPP1R17O96001 155 aa10.21□□□□□ -0.77
SYNPO-202ENST00000394243 ZNF714Q96N38 554 aa10.21□□□□□ -0.77
SYNPO-202ENST00000394243 RASL10BQ96S79 203 aa10.21□□□□□ -0.77
SYNPO-202ENST00000394243 RNF7Q9UBF6 113 aa10.21□□□□□ -0.77
SYNPO-202ENST00000394243 APOHP02749 345 aaPredicted RBP10.21□□□□□ -0.78
SYNPO-202ENST00000394243 CELA2BP08218 269 aaPredicted RBP10.21□□□□□ -0.78
SYNPO-202ENST00000394243 GPR6P46095 362 aaPredicted RBP10.21□□□□□ -0.78
SYNPO-202ENST00000394243 ECSCRQ19T08 205 aa10.21□□□□□ -0.78
SYNPO-202ENST00000394243 GUSBP11Q6P575 273 aa10.21□□□□□ -0.78
SYNPO-202ENST00000394243 WFDC6Q9BQY6 131 aa10.21□□□□□ -0.78
SYNPO-202ENST00000394243 PRDM13Q9H4Q3 707 aa10.21□□□□□ -0.78
SYNPO-202ENST00000394243 NDUFS6O75380 124 aaKnown RBP10.21□□□□□ -0.78
SYNPO-202ENST00000394243 SERF1AO75920 110 aa10.21□□□□□ -0.78
SYNPO-202ENST00000394243 IL11P20809 199 aa10.21□□□□□ -0.78
SYNPO-202ENST00000394243 GCHFRP30047 84 aa10.21□□□□□ -0.78
SYNPO-202ENST00000394243 UNQ9370/PRO34162Q6UXP9 181 aa10.21□□□□□ -0.78
SYNPO-202ENST00000394243 C16orf92Q96LL3 132 aa10.21□□□□□ -0.78
SYNPO-202ENST00000394243 DLL1O00548 723 aa10.21□□□□□ -0.78
SYNPO-202ENST00000394243 UBE2L6O14933 153 aa10.21□□□□□ -0.78
SYNPO-202ENST00000394243 RPS20P60866 119 aaKnown RBP10.21□□□□□ -0.78
SYNPO-202ENST00000394243 NRN1Q9NPD7 142 aa10.21□□□□□ -0.78
SYNPO-202ENST00000394243 FAM90A26D6RGX4 464 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 100.2 ms