RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 IL36GQ9NZH8 169 aa9.44□□□□□ -0.9
CUX1-204ENST00000393824 TMEM238C9JI98 176 aa9.43□□□□□ -0.9
CUX1-204ENST00000393824 VENTXO95231 258 aa9.43□□□□□ -0.9
CUX1-204ENST00000393824 CLEC12BQ2HXU8 276 aa9.43□□□□□ -0.9
CUX1-204ENST00000393824 RSPO1Q2MKA7 263 aaPredicted RBP9.43□□□□□ -0.9
CUX1-204ENST00000393824 TMEM41BQ5BJD5 291 aa9.43□□□□□ -0.9
CUX1-204ENST00000393824 TPTE2P1Q5T6R2 138 aa9.43□□□□□ -0.9
CUX1-204ENST00000393824 KCNIP4Q6PIL6 250 aa9.43□□□□□ -0.9
CUX1-204ENST00000393824 IGFL3Q6UXB1 125 aa9.43□□□□□ -0.9
CUX1-204ENST00000393824 ZNF295-AS1Q8N0V1 137 aa9.43□□□□□ -0.9
CUX1-204ENST00000393824 RAB40CQ96S21 281 aa9.43□□□□□ -0.9
CUX1-204ENST00000393824 PARLQ9H300 379 aa9.43□□□□□ -0.9
CUX1-204ENST00000393824 PLK3Q9H4B4 646 aa9.43□□□□□ -0.9
CUX1-204ENST00000393824 TAAR3PQ9P1P4 343 aa9.43□□□□□ -0.9
CUX1-204ENST00000393824 PXMP4Q9Y6I8 212 aa9.43□□□□□ -0.9
CUX1-204ENST00000393824 YLPM1P49750 1951 aaKnown RBP9.43□□□□□ -0.9
CUX1-204ENST00000393824 IGSF10Q6WRI0 2623 aa9.43□□□□□ -0.9
CUX1-204ENST00000393824 COL12A1Q99715 3063 aa9.43□□□□□ -0.9
CUX1-204ENST00000393824 F5H5K5 113 aa9.43□□□□□ -0.9
CUX1-204ENST00000393824 KLRC4-KLRK1H3BQV0 150 aa9.43□□□□□ -0.9
CUX1-204ENST00000393824 M0R135 149 aa9.43□□□□□ -0.9
CUX1-204ENST00000393824 ANGPTL7O43827 346 aa9.43□□□□□ -0.9
CUX1-204ENST00000393824 NUPR1O60356 82 aa9.43□□□□□ -0.9
CUX1-204ENST00000393824 LHX2P50458 406 aa9.43□□□□□ -0.9
CUX1-204ENST00000393824 PTTG1IPP53801 180 aa9.43□□□□□ -0.9
CUX1-204ENST00000393824 PAFAH1B2P68402 229 aa9.43□□□□□ -0.9
CUX1-204ENST00000393824 SRYQ05066 204 aa9.43□□□□□ -0.9
CUX1-204ENST00000393824 SRSF7Q16629 238 aaKnown RBP eCLIP9.43□□□□□ -0.91e-8■■■■■ 28.4
CUX1-204ENST00000393824 ATP6V1FQ16864 119 aa9.43□□□□□ -0.9
CUX1-204ENST00000393824 TMEM183BQ1AE95 376 aa9.43□□□□□ -0.9
CUX1-204ENST00000393824 RNF151Q2KHN1 245 aa9.43□□□□□ -0.9
CUX1-204ENST00000393824 Q6ZPA2 131 aa9.43□□□□□ -0.9
CUX1-204ENST00000393824 LHFPL2Q6ZUX7 228 aa9.43□□□□□ -0.9
CUX1-204ENST00000393824 DYRK2Q92630 601 aa9.43□□□□□ -0.9
CUX1-204ENST00000393824 ZNF799Q96GE5 643 aa9.43□□□□□ -0.9
CUX1-204ENST00000393824 SPRR3Q9UBC9 169 aa9.43□□□□□ -0.9
CUX1-204ENST00000393824 PIGBOS1A0A0B4J2F0 54 aa9.42□□□□□ -0.9
CUX1-204ENST00000393824 CBY3A6NI87 242 aa9.42□□□□□ -0.9
CUX1-204ENST00000393824 KIAA1324LA8MWY0 1029 aaPredicted RBP9.42□□□□□ -0.9
CUX1-204ENST00000393824 SLC25A6P12236 298 aa9.42□□□□□ -0.9
CUX1-204ENST00000393824 NTF4P34130 210 aa9.42□□□□□ -0.9
CUX1-204ENST00000393824 BMI1P35226 326 aa9.42□□□□□ -0.9
CUX1-204ENST00000393824 RAB7AP51149 207 aa9.42□□□□□ -0.9
CUX1-204ENST00000393824 CLDN18P56856 261 aa9.42□□□□□ -0.9
CUX1-204ENST00000393824 LRRC75BQ2VPJ9 315 aa9.42□□□□□ -0.9
CUX1-204ENST00000393824 TDRG1Q3Y452 100 aa9.42□□□□□ -0.9
CUX1-204ENST00000393824 C1orf185Q5T7R7 199 aa9.42□□□□□ -0.9
CUX1-204ENST00000393824 OR8G2PQ6IF36 304 aa9.42□□□□□ -0.9
CUX1-204ENST00000393824 Q6ZS49 121 aa9.42□□□□□ -0.9
CUX1-204ENST00000393824 C20orf196Q8IYI0 205 aa9.42□□□□□ -0.9
CUX1-204ENST00000393824 OR5T1Q8NG75 326 aa9.42□□□□□ -0.9
CUX1-204ENST00000393824 MRPL30Q8TCC3 161 aaKnown RBP9.42□□□□□ -0.9
CUX1-204ENST00000393824 RPUSD4Q96CM3 377 aaKnown RBP9.42□□□□□ -0.9
CUX1-204ENST00000393824 WDYHV1Q96HA8 205 aa9.42□□□□□ -0.9
CUX1-204ENST00000393824 ZDHHC11Q9H8X9 412 aa9.42□□□□□ -0.9
CUX1-204ENST00000393824 SLC7A10Q9NS82 523 aa9.42□□□□□ -0.9
CUX1-204ENST00000393824 ZNF391Q9UJN7 358 aa9.42□□□□□ -0.9
CUX1-204ENST00000393824 CCL25O15444 150 aa9.42□□□□□ -0.9
CUX1-204ENST00000393824 SPRY1O43609 319 aaPredicted RBP9.42□□□□□ -0.9
CUX1-204ENST00000393824 VAMP5O95183 116 aa9.42□□□□□ -0.9
CUX1-204ENST00000393824 ESDP10768 282 aa9.42□□□□□ -0.9
CUX1-204ENST00000393824 IL3RAP26951 378 aa9.42□□□□□ -0.9
CUX1-204ENST00000393824 TOMM20LQ6UXN7 152 aa9.42□□□□□ -0.9
CUX1-204ENST00000393824 Q6ZS92 163 aa9.42□□□□□ -0.9
CUX1-204ENST00000393824 TMEM144Q7Z5S9 345 aa9.42□□□□□ -0.9
CUX1-204ENST00000393824 ZNF525Q8N782 197 aa9.42□□□□□ -0.9
CUX1-204ENST00000393824 TMEM178AQ8NBL3 297 aa9.42□□□□□ -0.9
CUX1-204ENST00000393824 OR5D13Q8NGL4 314 aa9.42□□□□□ -0.9
CUX1-204ENST00000393824 CORO2AQ92828 525 aa9.42□□□□□ -0.9
CUX1-204ENST00000393824 LHX4Q969G2 390 aa9.42□□□□□ -0.9
CUX1-204ENST00000393824 NABP1Q96AH0 204 aa9.42□□□□□ -0.9
CUX1-204ENST00000393824 TRAPPC1Q9Y5R8 145 aa9.42□□□□□ -0.9
CUX1-204ENST00000393824 KIAA1549Q9HCM3 1950 aa9.41□□□□□ -0.9
CUX1-204ENST00000393824 TRAV17A0A0B4J275 112 aa9.41□□□□□ -0.9
CUX1-204ENST00000393824 CXCL13O43927 109 aa9.41□□□□□ -0.9
CUX1-204ENST00000393824 CD99P14209 185 aa9.41□□□□□ -0.9
CUX1-204ENST00000393824 GCH1P30793 250 aa9.41□□□□□ -0.9
CUX1-204ENST00000393824 PSMB3P49720 205 aa9.41□□□□□ -0.9
CUX1-204ENST00000393824 CLDN17P56750 224 aa9.41□□□□□ -0.9
CUX1-204ENST00000393824 TMPRSS3P57727 454 aa9.41□□□□□ -0.9
CUX1-204ENST00000393824 KIAA2026Q5HYC2 2103 aa9.41□□□□□ -0.9
CUX1-204ENST00000393824 BRICD5Q6PL45 260 aa9.41□□□□□ -0.9
CUX1-204ENST00000393824 ZNF818PQ6ZRF7 136 aa9.41□□□□□ -0.9
CUX1-204ENST00000393824 OSR2Q8N2R0 312 aa9.41□□□□□ -0.9
CUX1-204ENST00000393824 OR10D3Q8NH80 312 aa9.41□□□□□ -0.9
CUX1-204ENST00000393824 MANBALQ9NQG1 85 aa9.41□□□□□ -0.9
CUX1-204ENST00000393824 SLC39A9Q9NUM3 307 aa9.41□□□□□ -0.9
CUX1-204ENST00000393824 IGKV1-27A0A075B6S5 117 aa9.4□□□□□ -0.9
CUX1-204ENST00000393824 DHHO43323 396 aa9.4□□□□□ -0.9
CUX1-204ENST00000393824 PDCD6O75340 191 aa9.4□□□□□ -0.9
CUX1-204ENST00000393824 GYPAP02724 150 aa9.4□□□□□ -0.9
CUX1-204ENST00000393824 FOXL1Q12952 345 aa9.4□□□□□ -0.9
CUX1-204ENST00000393824 MALLQ13021 153 aa9.4□□□□□ -0.9
CUX1-204ENST00000393824 SPIN3Q5JUX0 258 aa9.4□□□□□ -0.9
CUX1-204ENST00000393824 TMEM42Q69YG0 159 aa9.4□□□□□ -0.9
CUX1-204ENST00000393824 Q6ZWC4 215 aa9.4□□□□□ -0.9
CUX1-204ENST00000393824 GAPTQ8N292 157 aa9.4□□□□□ -0.9
CUX1-204ENST00000393824 ZADH2Q8N4Q0 377 aa9.4□□□□□ -0.9
CUX1-204ENST00000393824 Q8NA96 180 aa9.4□□□□□ -0.9
CUX1-204ENST00000393824 SLC35E1Q96K37 410 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms