RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 CEACAM18A8MTB9 384 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 LINC01565O15544 149 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 EML2O95834 649 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 MAGEA5P43359 124 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 REG1BP48304 166 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 COL10A1Q03692 680 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 RND1Q92730 232 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 MYEOVQ96EZ4 313 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 NEU1Q99519 415 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 C11orf68Q9H3H3 251 aaKnown RBP6.36□□□□□ -1.39
SYNE1-208ENST00000367256 TINAGQ9UJW2 476 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 PXMP4Q9Y6I8 212 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 IGHV4-34P06331 123 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 SMIM13P0DJ93 91 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 CADM4Q8NFZ8 388 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 EAF1Q96JC9 268 aaPredicted RBP6.36□□□□□ -1.39
SYNE1-208ENST00000367256 KCNE5Q9UJ90 142 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 KLK13Q9UKR3 277 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 NHSL1Q5SYE7 1610 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 MED13LQ71F56 2210 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 TMEM250H0YL14 139 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 SOCS1O15524 211 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 SLC25A17O43808 307 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 NUDT10Q8NFP7 164 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 NUDT11Q96G61 164 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 CISD1Q9NZ45 108 aaKnown RBP6.36□□□□□ -1.39
SYNE1-208ENST00000367256 TRAV39A0A0B4J263 110 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 ARL14EPLP0DKL9 152 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 FOLR2P14207 255 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 CD200R1LQ6Q8B3 271 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 ASB5Q8WWX0 329 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 DENND4AQ7Z401 1863 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 B4E171 279 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 CXCL2P19875 107 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 RPS20P60866 119 aaKnown RBP6.36□□□□□ -1.39
SYNE1-208ENST00000367256 NHLRC3Q5JS37 347 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 CACNA1EQ15878 2313 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 RPL36A-HNRNPH2H7BZ11 118 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 PQLC2Q6ZP29 291 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 PRSS41Q7RTY9 318 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 GALNT14Q96FL9 552 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 PCGF1Q9BSM1 259 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 WNT16Q9UBV4 365 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 ABCA4P78363 2273 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 TRAV8-7A0A075B6U6 113 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 A0A1W2PPE3 182 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 C7orf71A4D174 169 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 CGB1A6NKQ9 187 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 HPRT1P00492 218 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 ANOS1P23352 680 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 C10orf128Q5T292 105 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 NPDC1Q9NQX5 325 aaPredicted RBP6.36□□□□□ -1.39
SYNE1-208ENST00000367256 SOX21Q9Y651 276 aaPredicted RBP6.36□□□□□ -1.39
SYNE1-208ENST00000367256 J3QT63 122 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 RELQ04864 619 aaPredicted RBP6.36□□□□□ -1.39
SYNE1-208ENST00000367256 OR10S1Q8NGN2 331 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 OR10AG1Q8NH19 301 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 COX14Q96I36 57 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 GEMIN7Q9H840 131 aaKnown RBP6.36□□□□□ -1.39
SYNE1-208ENST00000367256 ZNF71Q9NQZ8 489 aaPredicted RBP6.36□□□□□ -1.39
SYNE1-208ENST00000367256 CCL27Q9Y4X3 112 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 A0A1B0GV90 55 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 RBM11P57052 281 aaKnown RBP6.36□□□□□ -1.39
SYNE1-208ENST00000367256 SPNS2Q8IVW8 549 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 PUSL1Q8N0Z8 303 aaKnown RBP6.36□□□□□ -1.39
SYNE1-208ENST00000367256 ZNF714Q96N38 554 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 SCNM1Q9BWG6 230 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 TMEM222Q9H0R3 208 aa6.36□□□□□ -1.39
SYNE1-208ENST00000367256 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.35□□□□□ -1.39
SYNE1-208ENST00000367256 DLL1O00548 723 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 LEPROTL1O95214 131 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 TMEM91Q6ZNR0 172 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 PRR7Q8TB68 274 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 PSMG3Q9BT73 122 aaPredicted RBP6.35□□□□□ -1.39
SYNE1-208ENST00000367256 PGPEP1Q9NXJ5 209 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 ST6GALNAC2Q9UJ37 374 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 VENTXO95231 258 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 NGFRP08138 427 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 SOD3P08294 240 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 GUCA2BQ16661 112 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 TMEM196Q5HYL7 178 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 MEIG1Q5JSS6 88 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 TMEM240Q5SV17 173 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 GPR82Q96P67 336 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 MRPL18Q9H0U6 180 aaKnown RBP6.35□□□□□ -1.39
SYNE1-208ENST00000367256 PARLQ9H300 379 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 TGIF2-C20orf24A0A0A6YYL0 155 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 NPIPB9F8W1W9 429 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 NDUFB4O95168 129 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 RPS11P62280 158 aaKnown RBP eCLIP6.35□□□□□ -1.39
SYNE1-208ENST00000367256 ZNF56Q15929 161 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 FAM74A4Q5TZK3 123 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 FAM181AQ8N9Y4 354 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 PKDREJQ9NTG1 2253 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 ARHGAP21Q5T5U3 1957 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 A0A0B4J293 547 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 A0A1W2PS18 150 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 GLIPR1P48060 266 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 RPL31P62899 125 aaKnown RBP6.35□□□□□ -1.39
SYNE1-208ENST00000367256 ZNF645Q8N7E2 425 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms