RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 BEX4Q9NWD9 120 aaPredicted RBP15.23■□□□□ 0.03
CLN3-204ENST00000357857 FXYD6-FXYD2A0A087WZ82 144 aa15.23■□□□□ 0.03
CLN3-204ENST00000357857 IGHV2-70DA0A0C4DH43 119 aa15.23■□□□□ 0.03
CLN3-204ENST00000357857 FCGR3BO75015 233 aa15.23■□□□□ 0.03
CLN3-204ENST00000357857 S1PR2O95136 353 aa15.23■□□□□ 0.03
CLN3-204ENST00000357857 IL3RAP26951 378 aa15.23■□□□□ 0.03
CLN3-204ENST00000357857 AKR1C2P52895 323 aa15.23■□□□□ 0.03
CLN3-204ENST00000357857 PAX2Q02962 417 aa15.23■□□□□ 0.03
CLN3-204ENST00000357857 THOC7Q6I9Y2 204 aaKnown RBP15.23■□□□□ 0.03
CLN3-204ENST00000357857 C11orf87Q6NUJ2 197 aa15.23■□□□□ 0.03
CLN3-204ENST00000357857 DDB2Q92466 427 aa15.23■□□□□ 0.03
CLN3-204ENST00000357857 RBFOX2O43251 390 aaKnown RBP eCLIP15.22■□□□□ 0.03
CLN3-204ENST00000357857 ATG12O94817 140 aa15.22■□□□□ 0.03
CLN3-204ENST00000357857 IGKV1-5P01602 117 aa15.22■□□□□ 0.03
CLN3-204ENST00000357857 SLC25A4P12235 298 aa15.22■□□□□ 0.03
CLN3-204ENST00000357857 COX7A1P24310 79 aa15.22■□□□□ 0.03
CLN3-204ENST00000357857 PRB3Q04118 309 aaPredicted RBP15.22■□□□□ 0.03
CLN3-204ENST00000357857 RAB32Q13637 225 aa15.22■□□□□ 0.03
CLN3-204ENST00000357857 CLEC12BQ2HXU8 276 aa15.22■□□□□ 0.03
CLN3-204ENST00000357857 HIST2H2BCQ6DN03 193 aa15.22■□□□□ 0.03
CLN3-204ENST00000357857 FAM71F2Q6NXP2 309 aa15.22■□□□□ 0.03
CLN3-204ENST00000357857 C1orf122Q6ZSJ8 110 aa15.22■□□□□ 0.03
CLN3-204ENST00000357857 C9orf62Q8N4C0 152 aa15.22■□□□□ 0.03
CLN3-204ENST00000357857 OR13D1Q8NGV5 346 aa15.22■□□□□ 0.03
CLN3-204ENST00000357857 THAP6Q8TBB0 222 aa15.22■□□□□ 0.03
CLN3-204ENST00000357857 TMEM186Q96B77 213 aa15.22■□□□□ 0.03
CLN3-204ENST00000357857 RRNAD1Q96FB5 475 aaKnown RBP15.22■□□□□ 0.03
CLN3-204ENST00000357857 KPTNQ9Y664 436 aa15.22■□□□□ 0.03
CLN3-204ENST00000357857 A0A0G2JRQ6 117 aa15.21■□□□□ 0.03
CLN3-204ENST00000357857 HMSDA8MTL9 139 aa15.21■□□□□ 0.03
CLN3-204ENST00000357857 CT45A6P0DMU7 189 aa15.21■□□□□ 0.03
CLN3-204ENST00000357857 CT45A5P0DMU8 189 aa15.21■□□□□ 0.03
CLN3-204ENST00000357857 CT45A7P0DMV0 189 aa15.21■□□□□ 0.03
CLN3-204ENST00000357857 PRTN3P24158 256 aa15.21■□□□□ 0.03
CLN3-204ENST00000357857 ZNF137PP52743 207 aa15.21■□□□□ 0.03
CLN3-204ENST00000357857 HLA-DRB5Q30154 266 aa15.21■□□□□ 0.03
CLN3-204ENST00000357857 LAMTOR1Q6IAA8 161 aa15.21■□□□□ 0.03
CLN3-204ENST00000357857 ZNF383Q8NA42 475 aa15.21■□□□□ 0.03
CLN3-204ENST00000357857 BEND2Q8NDZ0 799 aa15.21■□□□□ 0.03
CLN3-204ENST00000357857 GPR146Q96CH1 333 aa15.21■□□□□ 0.03
CLN3-204ENST00000357857 SIRT7Q9NRC8 400 aa15.21■□□□□ 0.03
CLN3-204ENST00000357857 ANKRD17O75179 2603 aaKnown RBP15.21■□□□□ 0.03
CLN3-204ENST00000357857 FAM157AC9JC47 383 aa15.2■□□□□ 0.02
CLN3-204ENST00000357857 TACC2O95359 2948 aa15.2■□□□□ 0.02
CLN3-204ENST00000357857 SCGB1D2O95969 90 aa15.2■□□□□ 0.02
CLN3-204ENST00000357857 HPRT1P00492 218 aa15.2■□□□□ 0.02
CLN3-204ENST00000357857 IGLV1-47P01700 117 aa15.2■□□□□ 0.02
CLN3-204ENST00000357857 EPHA1P21709 976 aa15.2■□□□□ 0.02
CLN3-204ENST00000357857 FBN2P35556 2912 aa15.2■□□□□ 0.02
CLN3-204ENST00000357857 S100A10P60903 97 aa15.2■□□□□ 0.02
CLN3-204ENST00000357857 DEFB113Q30KQ7 82 aa15.2■□□□□ 0.02
CLN3-204ENST00000357857 PNKDQ8N490 385 aa15.2■□□□□ 0.02
CLN3-204ENST00000357857 OR4D5Q8NGN0 318 aa15.2■□□□□ 0.02
CLN3-204ENST00000357857 ST6GALNAC6Q969X2 333 aa15.2■□□□□ 0.02
CLN3-204ENST00000357857 PLEKHA2Q9HB19 425 aa15.2■□□□□ 0.02
CLN3-204ENST00000357857 MMP26Q9NRE1 261 aa15.2■□□□□ 0.02
CLN3-204ENST00000357857 MBD2Q9UBB5 411 aa15.2■□□□□ 0.02
CLN3-204ENST00000357857 POLR3KQ9Y2Y1 108 aaPredicted RBP15.2■□□□□ 0.02
CLN3-204ENST00000357857 HSPB11Q9Y547 144 aa15.2■□□□□ 0.02
CLN3-204ENST00000357857 PTPN13Q12923 2485 aa15.2■□□□□ 0.02
CLN3-204ENST00000357857 A0A1B0GU03 582 aa15.2■□□□□ 0.02
CLN3-204ENST00000357857 PET100P0DJ07 73 aa15.2■□□□□ 0.02
CLN3-204ENST00000357857 SLC25A6P12236 298 aa15.2■□□□□ 0.02
CLN3-204ENST00000357857 SLC25A16P16260 332 aa15.2■□□□□ 0.02
CLN3-204ENST00000357857 FAM219AQ8IW50 185 aa15.2■□□□□ 0.02
CLN3-204ENST00000357857 OR4S2Q8NH73 311 aa15.2■□□□□ 0.02
CLN3-204ENST00000357857 MRPL20Q9BYC9 149 aaKnown RBP15.2■□□□□ 0.02
CLN3-204ENST00000357857 HEXA-AS1Q9H8Q6 139 aa15.2■□□□□ 0.02
CLN3-204ENST00000357857 BOLA1Q9Y3E2 137 aa15.2■□□□□ 0.02
CLN3-204ENST00000357857 AMMECR1Q9Y4X0 333 aaPredicted RBP15.2■□□□□ 0.02
CLN3-204ENST00000357857 WNK2Q9Y3S1 2297 aa15.19■□□□□ 0.02
CLN3-204ENST00000357857 MED13LQ71F56 2210 aa15.19■□□□□ 0.02
CLN3-204ENST00000357857 ARPC5O15511 151 aa15.19■□□□□ 0.02
CLN3-204ENST00000357857 KRASP01116 189 aa15.19■□□□□ 0.02
CLN3-204ENST00000357857 G6PCP35575 357 aa15.19■□□□□ 0.02
CLN3-204ENST00000357857 LGALSLQ3ZCW2 172 aaPredicted RBP15.19■□□□□ 0.02
CLN3-204ENST00000357857 PRSS54Q6PEW0 395 aa15.19■□□□□ 0.02
CLN3-204ENST00000357857 TMEM65Q6PI78 240 aa15.19■□□□□ 0.02
CLN3-204ENST00000357857 ZNF546Q86UE3 836 aa15.19■□□□□ 0.02
CLN3-204ENST00000357857 LRRC75A-AS1Q8N1F1 130 aa15.19■□□□□ 0.02
CLN3-204ENST00000357857 RNF126Q9BV68 326 aa15.19■□□□□ 0.02
CLN3-204ENST00000357857 PLSCR3Q9NRY6 295 aa15.19■□□□□ 0.02
CLN3-204ENST00000357857 MMP24Q9Y5R2 645 aa15.19■□□□□ 0.02
CLN3-204ENST00000357857 H0YIZ8 118 aa15.18■□□□□ 0.02
CLN3-204ENST00000357857 MBPP02686 304 aaPredicted RBP15.18■□□□□ 0.02
CLN3-204ENST00000357857 REG1BP48304 166 aa15.18■□□□□ 0.02
CLN3-204ENST00000357857 SMCO1Q147U7 214 aa15.18■□□□□ 0.02
CLN3-204ENST00000357857 IZUMO4Q1ZYL8 232 aa15.18■□□□□ 0.02
CLN3-204ENST00000357857 VMO1Q7Z5L0 202 aa15.18■□□□□ 0.02
CLN3-204ENST00000357857 FOXRED2Q8IWF2 684 aa15.18■□□□□ 0.02
CLN3-204ENST00000357857 OR11H6Q8NGC7 330 aa15.18■□□□□ 0.02
CLN3-204ENST00000357857 R3HDM4Q96D70 268 aa15.18■□□□□ 0.02
CLN3-204ENST00000357857 SIRPDQ9H106 197 aa15.18■□□□□ 0.02
CLN3-204ENST00000357857 UNKLQ9H9P5 680 aaKnown RBP15.18■□□□□ 0.02
CLN3-204ENST00000357857 LPAR2Q9HBW0 351 aa15.18■□□□□ 0.02
CLN3-204ENST00000357857 SLC35D1Q9NTN3 355 aa15.18■□□□□ 0.02
CLN3-204ENST00000357857 ZFP57Q9NU63 452 aa15.18■□□□□ 0.02
CLN3-204ENST00000357857 CACNG5Q9UF02 275 aa15.18■□□□□ 0.02
CLN3-204ENST00000357857 LSM5Q9Y4Y9 91 aaKnown RBP15.18■□□□□ 0.02
CLN3-204ENST00000357857 ABCA2Q9BZC7 2435 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms