RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 C5P01031 1676 aa6.27□□□□□ -1.41
VPS13A-202ENST00000357409 A6NDN8 102 aa6.27□□□□□ -1.41
VPS13A-202ENST00000357409 APCSP02743 223 aa6.27□□□□□ -1.41
VPS13A-202ENST00000357409 ZNF485Q8NCK3 441 aa6.27□□□□□ -1.41
VPS13A-202ENST00000357409 RPS4Y2Q8TD47 263 aa6.27□□□□□ -1.41
VPS13A-202ENST00000357409 NEIL1Q96FI4 390 aaPredicted RBP6.27□□□□□ -1.41
VPS13A-202ENST00000357409 GPR61Q9BZJ8 451 aa6.27□□□□□ -1.41
VPS13A-202ENST00000357409 PGLYRP1O75594 196 aaPredicted RBP6.26□□□□□ -1.41
VPS13A-202ENST00000357409 ACAA1P09110 424 aaPredicted RBP6.26□□□□□ -1.41
VPS13A-202ENST00000357409 EVI2AP22794 236 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 ANOS1P23352 680 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 ATP6V1FQ16864 119 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 FAM106AQ4KMX7 169 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 SPACA3Q8IXA5 215 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 LEUTXA8MZ59 168 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 HYPMO75409 117 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 CD1AP06126 327 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 MDH2P40926 338 aaKnown RBP6.26□□□□□ -1.41
VPS13A-202ENST00000357409 UCNP55089 124 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 CLDN34H7C241 214 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 DEDDO75618 318 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 NPFFR1Q9GZQ6 430 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 Q9N2K0 584 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 SLC17A5Q9NRA2 495 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 ZNF343Q6P1L6 599 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 GPR82Q96P67 336 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 RAB40CQ96S21 281 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 CRIM1Q9NZV1 1036 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 LSM6P62312 80 aaKnown RBP6.26□□□□□ -1.41
VPS13A-202ENST00000357409 BTG1P62324 171 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 FAM169BQ8N8A8 192 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 SLIRPQ9GZT3 109 aaKnown RBP6.26□□□□□ -1.41
VPS13A-202ENST00000357409 CHD4Q14839 1912 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 RNF223E7ERA6 249 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 SAP30O75446 220 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 MYOD1P15172 320 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 SLC25A1P53007 311 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 RBM11P57052 281 aaKnown RBP6.26□□□□□ -1.41
VPS13A-202ENST00000357409 CSRP2Q16527 193 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 IGLV2-23P01705 113 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 LINC00305Q7Z4B0 112 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 VSTM2AQ8TAG5 236 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 SMIM4Q8WVI0 70 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 TMEM167BQ9NRX6 74 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 KCNE5Q9UJ90 142 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 DLG5Q8TDM6 1919 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 CACNA1SQ13698 1873 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 TOGARAM1Q9Y4F4 1720 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 TRAV24A0A0B4J272 114 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 CD55P08174 381 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 Q5PR19 223 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 RAX2Q96IS3 184 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 LINC00470Q9BZP3 86 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 TMEM56-RWDD3S4R434 201 aa6.26□□□□□ -1.41
VPS13A-202ENST00000357409 SCN3AQ9NY46 2000 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 CEACAM21Q3KPI0 293 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 CHCHD2P9Q5T1J5 151 aaPredicted RBP6.25□□□□□ -1.41
VPS13A-202ENST00000357409 SPSB4Q96A44 273 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 HSPB7Q9UBY9 170 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 NAT8Q9UHE5 227 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 NUP188Q5SRE5 1749 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 ZNF815PA8K554 130 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 DMKNQ6E0U4 476 aaPredicted RBP6.25□□□□□ -1.41
VPS13A-202ENST00000357409 LFNGQ8NES3 379 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 ANGPTL4Q9BY76 406 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 ST6GALNAC2Q9UJ37 374 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 TRAV8-6A0A0B4J262 113 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 CHAC2Q8WUX2 184 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 PHLDA1Q8WV24 401 aaPredicted RBP6.25□□□□□ -1.41
VPS13A-202ENST00000357409 PILRAQ9UKJ1 303 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 KBTBD11O94819 623 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 PRSS54Q6PEW0 395 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 PGPEP1Q9NXJ5 209 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 NDUFA3O95167 84 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 LIPFP07098 398 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 ZNF250P15622 560 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 FGF12P61328 243 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 RIGQ13278 110 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 AWAT1Q58HT5 328 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 ARRDC1Q8N5I2 433 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 C3orf56Q8N813 242 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 IMMP2LQ96T52 175 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 SLC25A33Q9BSK2 321 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 TOLLIPQ9H0E2 274 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 ASCL4Q6XD76 172 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 OR13A1Q8NGR1 328 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 SCMH1Q96GD3 660 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 SF3B5Q9BWJ5 86 aaKnown RBP6.25□□□□□ -1.41
VPS13A-202ENST00000357409 LAMB4A4D0S4 1761 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 CORTO00230 105 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 ZNF645Q8N7E2 425 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 C4AP0C0L4 1744 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 SLC17A3O00476 420 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 IBA57Q5T440 356 aaKnown RBP6.25□□□□□ -1.41
VPS13A-202ENST00000357409 WDR82Q6UXN9 313 aa6.25□□□□□ -1.41
VPS13A-202ENST00000357409 MRPL30Q8TCC3 161 aaKnown RBP6.25□□□□□ -1.41
VPS13A-202ENST00000357409 MSGN1A6NI15 193 aa6.24□□□□□ -1.41
VPS13A-202ENST00000357409 HIST1H1EP10412 219 aaKnown RBP6.24□□□□□ -1.41
VPS13A-202ENST00000357409 KLF17Q5JT82 389 aaPredicted RBP6.24□□□□□ -1.41
VPS13A-202ENST00000357409 DNLZQ5SXM8 178 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms