RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 MARS2Q96GW9 593 aaKnown RBP12.02□□□□□ -0.49
CSPG4-201ENST00000308508 MS4A5Q9H3V2 200 aa12.02□□□□□ -0.49
CSPG4-201ENST00000308508 CLDN14O95500 239 aa12.02□□□□□ -0.49
CSPG4-201ENST00000308508 FGF12P61328 243 aa12.02□□□□□ -0.49
CSPG4-201ENST00000308508 FAM219BQ5XKK7 198 aa12.02□□□□□ -0.49
CSPG4-201ENST00000308508 OR5A1Q8NGJ0 315 aa12.02□□□□□ -0.49
CSPG4-201ENST00000308508 RASL10BQ96S79 203 aa12.02□□□□□ -0.49
CSPG4-201ENST00000308508 MRPL32Q9BYC8 188 aaKnown RBP12.02□□□□□ -0.49
CSPG4-201ENST00000308508 KLK15Q9H2R5 256 aa12.02□□□□□ -0.49
CSPG4-201ENST00000308508 IGHV1OR21-1A0A087WYE8 117 aa12.02□□□□□ -0.49
CSPG4-201ENST00000308508 TYMSP04818 313 aa12.02□□□□□ -0.49
CSPG4-201ENST00000308508 Q5PR19 223 aa12.02□□□□□ -0.49
CSPG4-201ENST00000308508 C10orf111Q8N326 155 aa12.02□□□□□ -0.49
CSPG4-201ENST00000308508 OR13C6PQ8NH95 151 aa12.02□□□□□ -0.49
CSPG4-201ENST00000308508 CACNA1DQ01668 2161 aa12.01□□□□□ -0.49
CSPG4-201ENST00000308508 C8orf88P0DMB2 117 aa12.01□□□□□ -0.49
CSPG4-201ENST00000308508 FCGR2BP31994 310 aaPredicted RBP12.01□□□□□ -0.49
CSPG4-201ENST00000308508 TMEM250H0YL14 139 aa12.01□□□□□ -0.49
CSPG4-201ENST00000308508 BGLAPP02818 100 aa12.01□□□□□ -0.49
CSPG4-201ENST00000308508 CEACAM21Q3KPI0 293 aa12.01□□□□□ -0.49
CSPG4-201ENST00000308508 C2orf88Q9BSF0 95 aa12.01□□□□□ -0.49
CSPG4-201ENST00000308508 TRAV30A0A087WSZ9 112 aa12.01□□□□□ -0.49
CSPG4-201ENST00000308508 MIC13Q5XKP0 118 aa12.01□□□□□ -0.49
CSPG4-201ENST00000308508 TTC9CQ8N5M4 171 aa12.01□□□□□ -0.49
CSPG4-201ENST00000308508 PGPEP1Q9NXJ5 209 aa12.01□□□□□ -0.49
CSPG4-201ENST00000308508 CTGFP29279 349 aa12.01□□□□□ -0.49
CSPG4-201ENST00000308508 IFITM3Q01628 133 aa12.01□□□□□ -0.49
CSPG4-201ENST00000308508 SPCS1Q9Y6A9 102 aa12.01□□□□□ -0.49
CSPG4-201ENST00000308508 SCN7AQ01118 1682 aa12.01□□□□□ -0.49
CSPG4-201ENST00000308508 CACNG7P62955 275 aa12.01□□□□□ -0.49
CSPG4-201ENST00000308508 REG1BP48304 166 aa12.01□□□□□ -0.49
CSPG4-201ENST00000308508 VN1R4Q7Z5H5 301 aa12.01□□□□□ -0.49
CSPG4-201ENST00000308508 KIAA1644Q3SXP7 199 aa12□□□□□ -0.49
CSPG4-201ENST00000308508 HIKESHIQ53FT3 197 aa12□□□□□ -0.49
CSPG4-201ENST00000308508 OR51G1Q8NGK1 321 aa12□□□□□ -0.49
CSPG4-201ENST00000308508 GPR132Q9UNW8 380 aa12□□□□□ -0.49
CSPG4-201ENST00000308508 TRAV8-6A0A0B4J262 113 aa12□□□□□ -0.49
CSPG4-201ENST00000308508 C16orf47Q6ZP98 133 aaPredicted RBP12□□□□□ -0.49
CSPG4-201ENST00000308508 APCDD1LQ8NCL9 501 aa12□□□□□ -0.49
CSPG4-201ENST00000308508 WNT2BQ93097 391 aa12□□□□□ -0.49
CSPG4-201ENST00000308508 SUMO2P61956 95 aaKnown RBP12□□□□□ -0.49
CSPG4-201ENST00000308508 SH3BGRL3Q9H299 93 aa12□□□□□ -0.49
CSPG4-201ENST00000308508 FAM181BA6NEQ2 426 aa12□□□□□ -0.49
CSPG4-201ENST00000308508 SLC17A3O00476 420 aa12□□□□□ -0.49
CSPG4-201ENST00000308508 LCN2P80188 198 aa12□□□□□ -0.49
CSPG4-201ENST00000308508 GCSAMQ8N6F7 178 aa12□□□□□ -0.49
CSPG4-201ENST00000308508 C1QL3Q5VWW1 255 aa12□□□□□ -0.49
CSPG4-201ENST00000308508 TEX29Q8N6K0 151 aa12□□□□□ -0.49
CSPG4-201ENST00000308508 TIMP4Q99727 224 aa12□□□□□ -0.49
CSPG4-201ENST00000308508 LAMB2P55268 1798 aa12□□□□□ -0.49
CSPG4-201ENST00000308508 CGB1A6NKQ9 187 aa12□□□□□ -0.49
CSPG4-201ENST00000308508 ATP5LO75964 103 aa12□□□□□ -0.49
CSPG4-201ENST00000308508 FAM106CPP0CH98 169 aa12□□□□□ -0.49
CSPG4-201ENST00000308508 P2RY4P51582 365 aa12□□□□□ -0.49
CSPG4-201ENST00000308508 AQP3Q92482 292 aa12□□□□□ -0.49
CSPG4-201ENST00000308508 TNFRSF9Q07011 255 aa12□□□□□ -0.49
CSPG4-201ENST00000308508 KCNS1Q96KK3 526 aa12□□□□□ -0.49
CSPG4-201ENST00000308508 TBL2Q9Y4P3 447 aaKnown RBP12□□□□□ -0.49
CSPG4-201ENST00000308508 HLA-DQB1P01920 261 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 CA7P43166 264 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 NANOS3P60323 173 aaKnown RBP11.99□□□□□ -0.49
CSPG4-201ENST00000308508 ZNF56Q15929 161 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 ANAPC13Q9BS18 74 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 DIDO1Q9BTC0 2240 aaKnown RBP11.99□□□□□ -0.49
CSPG4-201ENST00000308508 COL22A1Q8NFW1 1626 aaPredicted RBP11.99□□□□□ -0.49
CSPG4-201ENST00000308508 TRBV20OR9-2A0A075B6H5 130 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 TMEM170BQ5T4T1 132 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 COX14Q96I36 57 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 C14orf144Q96I85 54 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 RTN4RQ9BZR6 473 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 OPN3Q9H1Y3 402 aaPredicted RBP11.99□□□□□ -0.49
CSPG4-201ENST00000308508 CRYBB3P26998 211 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 TMEM95Q3KNT9 176 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 IGKV3D-15A0A087WSY6 115 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 IGKV3-15P01624 115 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 HOXB3P14651 431 aaPredicted RBP11.99□□□□□ -0.49
CSPG4-201ENST00000308508 TSPOP30536 169 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 SOX8P57073 446 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 CBLN1P23435 193 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 TMEM240Q5SV17 173 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 WNT10AQ9GZT5 417 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 FAM90A10PA6NDY2 464 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 FAM90A18PA6NE21 464 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 FAM90A16PA6NEW6 464 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 FAM90A20PA6NIJ5 464 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 FAM90A8PA6NJQ4 464 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 FAM90A7PA6NKC0 464 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 FAM90A22PA8MWA6 464 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 FAM90A12PA8MX19 464 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 FAM90A5PA8MXJ8 464 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 FAM90A23PA8MXZ1 464 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 FAM90A15PP0C7V4 464 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 FAM90A13PP0C7W8 464 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 FAM90A14PP0C7W9 464 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 FAM90A24PP0C7X0 464 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 EAF1Q96JC9 268 aaPredicted RBP11.99□□□□□ -0.49
CSPG4-201ENST00000308508 ALS2Q96Q42 1657 aa11.99□□□□□ -0.49
CSPG4-201ENST00000308508 TRAV39A0A0B4J263 110 aa11.98□□□□□ -0.49
CSPG4-201ENST00000308508 TMEM50AO95807 157 aa11.98□□□□□ -0.49
CSPG4-201ENST00000308508 SDHCQ99643 169 aaPredicted RBP11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms