RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 SYT13Q7L8C5 426 aa11.38□□□□□ -0.59
SKA3-201ENST00000298260 OR1F12Q8NHA8 337 aa11.38□□□□□ -0.59
SKA3-201ENST00000298260 NRN1Q9NPD7 142 aa11.38□□□□□ -0.59
SKA3-201ENST00000298260 MDFIC2A0A1B0GVS7 189 aa11.38□□□□□ -0.59
SKA3-201ENST00000298260 SNURFLB1AK76 121 aa11.38□□□□□ -0.59
SKA3-201ENST00000298260 F6UZH7 168 aa11.38□□□□□ -0.59
SKA3-201ENST00000298260 SYNGR1O43759 233 aa11.38□□□□□ -0.59
SKA3-201ENST00000298260 RAMP3O60896 148 aa11.38□□□□□ -0.59
SKA3-201ENST00000298260 CDKN1BP46527 198 aa11.38□□□□□ -0.59
SKA3-201ENST00000298260 FUT6P51993 359 aa11.38□□□□□ -0.59
SKA3-201ENST00000298260 EDDM3BP56851 147 aa11.38□□□□□ -0.59
SKA3-201ENST00000298260 RNPS1Q15287 305 aaKnown RBP11.38□□□□□ -0.59
SKA3-201ENST00000298260 C9orf135Q5VTT2 229 aa11.38□□□□□ -0.59
SKA3-201ENST00000298260 KNTC1P50748 2209 aa11.37□□□□□ -0.59
SKA3-201ENST00000298260 CLDN14O95500 239 aa11.37□□□□□ -0.59
SKA3-201ENST00000298260 KLF3P57682 345 aaPredicted RBP11.37□□□□□ -0.59
SKA3-201ENST00000298260 RANP62826 216 aaKnown RBP11.37□□□□□ -0.59
SKA3-201ENST00000298260 PAFAH1B2P68402 229 aa11.37□□□□□ -0.59
SKA3-201ENST00000298260 UBE2V1Q13404 147 aa11.37□□□□□ -0.59
SKA3-201ENST00000298260 ZNF324BQ6AW86 544 aaPredicted RBP11.37□□□□□ -0.59
SKA3-201ENST00000298260 C1orf174Q8IYL3 243 aa11.37□□□□□ -0.59
SKA3-201ENST00000298260 ST6GALNAC6Q969X2 333 aa11.37□□□□□ -0.59
SKA3-201ENST00000298260 UHRF2Q96PU4 802 aa11.37□□□□□ -0.59
SKA3-201ENST00000298260 DEPPQ9NTK1 212 aa11.37□□□□□ -0.59
SKA3-201ENST00000298260 MTCH1Q9NZJ7 389 aa11.37□□□□□ -0.59
SKA3-201ENST00000298260 SLC45A2Q9UMX9 530 aa11.37□□□□□ -0.59
SKA3-201ENST00000298260 OR2W1Q9Y3N9 320 aa11.37□□□□□ -0.59
SKA3-201ENST00000298260 hCG_38984A0A1B0GV85 526 aa11.37□□□□□ -0.59
SKA3-201ENST00000298260 VENTXO95231 258 aa11.37□□□□□ -0.59
SKA3-201ENST00000298260 GPX1P07203 203 aa11.37□□□□□ -0.59
SKA3-201ENST00000298260 CELA2AP08217 269 aa11.37□□□□□ -0.59
SKA3-201ENST00000298260 NTF3P20783 257 aa11.37□□□□□ -0.59
SKA3-201ENST00000298260 G6PCP35575 357 aa11.37□□□□□ -0.59
SKA3-201ENST00000298260 FOXL1Q12952 345 aa11.37□□□□□ -0.59
SKA3-201ENST00000298260 PRDX4Q13162 271 aa11.37□□□□□ -0.59
SKA3-201ENST00000298260 ZIC4Q8N9L1 334 aa11.37□□□□□ -0.59
SKA3-201ENST00000298260 APOBEC3DQ96AK3 386 aaPredicted RBP11.37□□□□□ -0.59
SKA3-201ENST00000298260 CLDN23Q96B33 292 aa11.37□□□□□ -0.59
SKA3-201ENST00000298260 KLHDC7BQ96G42 594 aa11.37□□□□□ -0.59
SKA3-201ENST00000298260 PARD6GQ9BYG4 376 aaPredicted RBP11.37□□□□□ -0.59
SKA3-201ENST00000298260 ITGB1BP1O14713 200 aa11.36□□□□□ -0.59
SKA3-201ENST00000298260 ZG16O60844 167 aa11.36□□□□□ -0.59
SKA3-201ENST00000298260 TCL1AP56279 114 aa11.36□□□□□ -0.59
SKA3-201ENST00000298260 YPEL3P61236 119 aaPredicted RBP11.36□□□□□ -0.59
SKA3-201ENST00000298260 ZNF816Q0VGE8 651 aaPredicted RBP11.36□□□□□ -0.59
SKA3-201ENST00000298260 TMEM42Q69YG0 159 aa11.36□□□□□ -0.59
SKA3-201ENST00000298260 Q6ZSR3 168 aa11.36□□□□□ -0.59
SKA3-201ENST00000298260 OR4C5Q8NGB2 326 aa11.36□□□□□ -0.59
SKA3-201ENST00000298260 LOXL4Q96JB6 756 aa11.36□□□□□ -0.59
SKA3-201ENST00000298260 VPS25Q9BRG1 176 aa11.36□□□□□ -0.59
SKA3-201ENST00000298260 NPCDR1Q9BY65 106 aa11.36□□□□□ -0.59
SKA3-201ENST00000298260 HS3ST3A1Q9Y663 406 aa11.36□□□□□ -0.59
SKA3-201ENST00000298260 K7EN84 100 aa11.36□□□□□ -0.59
SKA3-201ENST00000298260 TNFSF11O14788 317 aa11.36□□□□□ -0.59
SKA3-201ENST00000298260 SUMO3P55854 103 aaPredicted RBP11.36□□□□□ -0.59
SKA3-201ENST00000298260 ATP6V1FQ16864 119 aa11.36□□□□□ -0.59
SKA3-201ENST00000298260 C10orf128Q5T292 105 aa11.36□□□□□ -0.59
SKA3-201ENST00000298260 RAET1LQ5VY80 246 aa11.36□□□□□ -0.59
SKA3-201ENST00000298260 MRPL52Q86TS9 123 aaKnown RBP11.36□□□□□ -0.59
SKA3-201ENST00000298260 FGFRL1Q8N441 504 aa11.36□□□□□ -0.59
SKA3-201ENST00000298260 C10orf35Q96D05 121 aa11.36□□□□□ -0.59
SKA3-201ENST00000298260 OTX2P32243 289 aa11.36□□□□□ -0.59
SKA3-201ENST00000298260 CDC34P49427 236 aaPredicted RBP11.36□□□□□ -0.59
SKA3-201ENST00000298260 GFRA1P56159 465 aa11.36□□□□□ -0.59
SKA3-201ENST00000298260 FOXL2NBQ6ZUU3 175 aa11.36□□□□□ -0.59
SKA3-201ENST00000298260 ANKRD37Q7Z713 158 aa11.36□□□□□ -0.59
SKA3-201ENST00000298260 AGBL5Q8NDL9 886 aa11.36□□□□□ -0.59
SKA3-201ENST00000298260 NFAM1Q8NET5 270 aaPredicted RBP11.36□□□□□ -0.59
SKA3-201ENST00000298260 OR4B1Q8NGF8 309 aa11.36□□□□□ -0.59
SKA3-201ENST00000298260 OR56B2PQ8NGI1 322 aa11.36□□□□□ -0.59
SKA3-201ENST00000298260 TMEM54Q969K7 222 aa11.36□□□□□ -0.59
SKA3-201ENST00000298260 IL36GQ9NZH8 169 aa11.36□□□□□ -0.59
SKA3-201ENST00000298260 UQCR10Q9UDW1 63 aa11.36□□□□□ -0.59
SKA3-201ENST00000298260 TIAF1O95411 115 aa11.35□□□□□ -0.59
SKA3-201ENST00000298260 C3orf79P0CE67 100 aa11.35□□□□□ -0.59
SKA3-201ENST00000298260 COX5AP20674 150 aa11.35□□□□□ -0.59
SKA3-201ENST00000298260 TIMP3P35625 211 aa11.35□□□□□ -0.59
SKA3-201ENST00000298260 FASLGP48023 281 aa11.35□□□□□ -0.59
SKA3-201ENST00000298260 LDLRAD2Q5SZI1 272 aa11.35□□□□□ -0.59
SKA3-201ENST00000298260 RHBDD2Q6NTF9 364 aa11.35□□□□□ -0.59
SKA3-201ENST00000298260 DEFB123Q8N688 67 aa11.35□□□□□ -0.59
SKA3-201ENST00000298260 OR10G8Q8NGN5 311 aa11.35□□□□□ -0.59
SKA3-201ENST00000298260 ORAOV1Q8WV07 137 aa11.35□□□□□ -0.59
SKA3-201ENST00000298260 RNF2Q99496 336 aa11.35□□□□□ -0.59
SKA3-201ENST00000298260 FGF21Q9NSA1 209 aa11.35□□□□□ -0.59
SKA3-201ENST00000298260 COX11Q9Y6N1 276 aa11.35□□□□□ -0.59
SKA3-201ENST00000298260 A0A1B0GX78 115 aa11.35□□□□□ -0.59
SKA3-201ENST00000298260 RELBQ01201 579 aa11.35□□□□□ -0.59
SKA3-201ENST00000298260 FBLN7Q53RD9 439 aa11.35□□□□□ -0.59
SKA3-201ENST00000298260 FAM27BQ5VT28 67 aa11.35□□□□□ -0.59
SKA3-201ENST00000298260 TMEM14EPQ6UXP3 125 aa11.35□□□□□ -0.59
SKA3-201ENST00000298260 OR8I2Q8N0Y5 310 aa11.35□□□□□ -0.59
SKA3-201ENST00000298260 IFI44Q8TCB0 444 aa11.35□□□□□ -0.59
SKA3-201ENST00000298260 FSCN3Q9NQT6 498 aa11.35□□□□□ -0.59
SKA3-201ENST00000298260 ZNF586Q9NXT0 402 aa11.35□□□□□ -0.59
SKA3-201ENST00000298260 OR6C6A6NF89 314 aa11.34□□□□□ -0.59
SKA3-201ENST00000298260 RRHO14718 337 aa11.34□□□□□ -0.59
SKA3-201ENST00000298260 RBMXL2O75526 392 aaKnown RBP11.34□□□□□ -0.59
SKA3-201ENST00000298260 DUSP3P51452 185 aaPredicted RBP11.34□□□□□ -0.59
SKA3-201ENST00000298260 ZNF83P51522 516 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms