RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 RBMXL2O75526 392 aaKnown RBP19.88■□□□□ 0.77
TRIM54-201ENST00000296098 SERF2P84101 59 aa19.88■□□□□ 0.77
TRIM54-201ENST00000296098 CISD2Q8N5K1 135 aaKnown RBP19.88■□□□□ 0.77
TRIM54-201ENST00000296098 R3HDM4Q96D70 268 aa19.88■□□□□ 0.77
TRIM54-201ENST00000296098 CIB3Q96Q77 187 aaPredicted RBP19.88■□□□□ 0.77
TRIM54-201ENST00000296098 AIFM2Q9BRQ8 373 aa19.88■□□□□ 0.77
TRIM54-201ENST00000296098 C20orf24Q9BUV8 137 aa19.88■□□□□ 0.77
TRIM54-201ENST00000296098 RPRMQ9NS64 109 aa19.88■□□□□ 0.77
TRIM54-201ENST00000296098 SCAF4O95104 1147 aaKnown RBP19.88■□□□□ 0.77
TRIM54-201ENST00000296098 SELLP14151 372 aa19.88■□□□□ 0.77
TRIM54-201ENST00000296098 ICAM4Q14773 271 aa19.88■□□□□ 0.77
TRIM54-201ENST00000296098 RHEBQ15382 184 aa19.88■□□□□ 0.77
TRIM54-201ENST00000296098 TMEM108Q6UXF1 575 aa19.88■□□□□ 0.77
TRIM54-201ENST00000296098 C15orf54Q8N8G6 183 aa19.88■□□□□ 0.77
TRIM54-201ENST00000296098 CLDND2Q8NHS1 167 aa19.88■□□□□ 0.77
TRIM54-201ENST00000296098 UNKLQ9H9P5 680 aaKnown RBP19.88■□□□□ 0.77
TRIM54-201ENST00000296098 ELOVL5Q9NYP7 299 aa19.88■□□□□ 0.77
TRIM54-201ENST00000296098 SSUH2Q9Y2M2 353 aa19.88■□□□□ 0.77
TRIM54-201ENST00000296098 M0R1X1 148 aa19.87■□□□□ 0.77
TRIM54-201ENST00000296098 ZG16O60844 167 aa19.87■□□□□ 0.77
TRIM54-201ENST00000296098 PROP1O75360 226 aa19.87■□□□□ 0.77
TRIM54-201ENST00000296098 Q8NA96 180 aa19.87■□□□□ 0.77
TRIM54-201ENST00000296098 TAF15Q92804 592 aaKnown RBP eCLIP19.87■□□□□ 0.77
TRIM54-201ENST00000296098 ZDHHC16Q969W1 377 aa19.87■□□□□ 0.77
TRIM54-201ENST00000296098 CLCC1Q96S66 551 aa19.87■□□□□ 0.77
TRIM54-201ENST00000296098 VSIRQ9H7M9 311 aa19.87■□□□□ 0.77
TRIM54-201ENST00000296098 RAB9BQ9NP90 201 aa19.87■□□□□ 0.77
TRIM54-201ENST00000296098 DIDO1Q9BTC0 2240 aaKnown RBP19.87■□□□□ 0.77
TRIM54-201ENST00000296098 COLCA2A8K830 154 aa19.86■□□□□ 0.77
TRIM54-201ENST00000296098 C16orf97H3BN30 126 aa19.86■□□□□ 0.77
TRIM54-201ENST00000296098 FCGR3BO75015 233 aa19.86■□□□□ 0.77
TRIM54-201ENST00000296098 FOXC1Q12948 553 aa19.86■□□□□ 0.77
TRIM54-201ENST00000296098 AVPI1Q5T686 147 aa19.86■□□□□ 0.77
TRIM54-201ENST00000296098 STUMQ69YW2 141 aa19.86■□□□□ 0.77
TRIM54-201ENST00000296098 SDSLQ96GA7 329 aa19.86■□□□□ 0.77
TRIM54-201ENST00000296098 IFI27L2Q9H2X8 130 aa19.86■□□□□ 0.77
TRIM54-201ENST00000296098 PRELID3BQ9Y3B1 194 aa19.86■□□□□ 0.77
TRIM54-201ENST00000296098 CYB5R3P00387 301 aaPredicted RBP19.86■□□□□ 0.77
TRIM54-201ENST00000296098 HSPB1P04792 205 aaKnown RBP19.86■□□□□ 0.77
TRIM54-201ENST00000296098 SRP19P09132 144 aaKnown RBP19.86■□□□□ 0.77
TRIM54-201ENST00000296098 GFRALQ6UXV0 394 aa19.86■□□□□ 0.77
TRIM54-201ENST00000296098 SPACA3Q8IXA5 215 aa19.86■□□□□ 0.77
TRIM54-201ENST00000296098 Q8TCH9 128 aa19.86■□□□□ 0.77
TRIM54-201ENST00000296098 CUL9Q8IWT3 2517 aa19.86■□□□□ 0.77
TRIM54-201ENST00000296098 CEBPZOSA8MTT3 80 aa19.85■□□□□ 0.77
TRIM54-201ENST00000296098 HPRT1P00492 218 aa19.85■□□□□ 0.77
TRIM54-201ENST00000296098 CGB3P0DN86 165 aa19.85■□□□□ 0.77
TRIM54-201ENST00000296098 CGB7P0DN87 165 aa19.85■□□□□ 0.77
TRIM54-201ENST00000296098 ATP6V1FQ16864 119 aa19.85■□□□□ 0.77
TRIM54-201ENST00000296098 RPL39P5Q59GN2 51 aa19.85■□□□□ 0.77
TRIM54-201ENST00000296098 TMEM41BQ5BJD5 291 aa19.85■□□□□ 0.77
TRIM54-201ENST00000296098 WFDC8Q8IUA0 241 aa19.85■□□□□ 0.77
TRIM54-201ENST00000296098 TMEM147Q9BVK8 224 aa19.85■□□□□ 0.77
TRIM54-201ENST00000296098 TIMM9Q9Y5J7 89 aa19.85■□□□□ 0.77
TRIM54-201ENST00000296098 RAI1Q7Z5J4 1906 aaPredicted RBP19.85■□□□□ 0.77
TRIM54-201ENST00000296098 PTAFRP25105 342 aa19.85■□□□□ 0.77
TRIM54-201ENST00000296098 ZNF787Q6DD87 383 aa19.85■□□□□ 0.77
TRIM54-201ENST00000296098 PINX1Q96BK5 328 aaKnown RBP19.85■□□□□ 0.77
TRIM54-201ENST00000296098 IGHV3-7P01780 117 aa19.84■□□□□ 0.77
TRIM54-201ENST00000296098 ZNF134P52741 427 aa19.84■□□□□ 0.77
TRIM54-201ENST00000296098 ZNF726P1Q15940 193 aa19.84■□□□□ 0.77
TRIM54-201ENST00000296098 C17orf58Q2M2W7 97 aa19.84■□□□□ 0.77
TRIM54-201ENST00000296098 KHDC3LQ587J8 217 aa19.84■□□□□ 0.77
TRIM54-201ENST00000296098 DUX4L9Q6RFH8 374 aaPredicted RBP19.84■□□□□ 0.77
TRIM54-201ENST00000296098 MBD3L1Q8WWY6 194 aa19.84■□□□□ 0.77
TRIM54-201ENST00000296098 RCC1LQ96I51 464 aaKnown RBP19.84■□□□□ 0.77
TRIM54-201ENST00000296098 GAFA1Q96PS6 74 aa19.84■□□□□ 0.77
TRIM54-201ENST00000296098 SH3BGRL2Q9UJC5 107 aa19.84■□□□□ 0.77
TRIM54-201ENST00000296098 PUS1Q9Y606 427 aaKnown RBP eCLIP19.84■□□□□ 0.77
TRIM54-201ENST00000296098 MGAQ8IWI9 3026 aa19.83■□□□□ 0.77
TRIM54-201ENST00000296098 LOC102723971A0A1B0GUV8 181 aa19.83■□□□□ 0.77
TRIM54-201ENST00000296098 FAM90A9PA6NNJ1 464 aa19.83■□□□□ 0.77
TRIM54-201ENST00000296098 RBFOX2O43251 390 aaKnown RBP eCLIP19.83■□□□□ 0.77
TRIM54-201ENST00000296098 CRYBA1P05813 215 aa19.83■□□□□ 0.77
TRIM54-201ENST00000296098 RAB7AP51149 207 aa19.83■□□□□ 0.77
TRIM54-201ENST00000296098 OR10P1Q8NGE3 313 aa19.83■□□□□ 0.77
TRIM54-201ENST00000296098 QTRT1Q9BXR0 403 aaKnown RBP19.83■□□□□ 0.77
TRIM54-201ENST00000296098 FAM234AQ9H0X4 552 aa19.83■□□□□ 0.77
TRIM54-201ENST00000296098 DSCAMO60469 2012 aa19.83■□□□□ 0.76
TRIM54-201ENST00000296098 TRGV10A0A0A0MS01 117 aa19.83■□□□□ 0.76
TRIM54-201ENST00000296098 KBTBD11-OT1A0A1B0GTJ5 212 aa19.83■□□□□ 0.76
TRIM54-201ENST00000296098 PMS2P5A8MQ11 134 aa19.83■□□□□ 0.76
TRIM54-201ENST00000296098 ITGB1BP1O14713 200 aa19.83■□□□□ 0.76
TRIM54-201ENST00000296098 OR9G9P0C7N8 305 aa19.83■□□□□ 0.76
TRIM54-201ENST00000296098 IRF2P14316 349 aa19.83■□□□□ 0.76
TRIM54-201ENST00000296098 ELLP55199 621 aaPredicted RBP19.83■□□□□ 0.76
TRIM54-201ENST00000296098 SPINK9Q5DT21 86 aa19.83■□□□□ 0.76
TRIM54-201ENST00000296098 ZNF665Q9H7R5 613 aa19.83■□□□□ 0.76
TRIM54-201ENST00000296098 TUBA4BQ9H853 241 aa19.83■□□□□ 0.76
TRIM54-201ENST00000296098 GFOD1Q9NXC2 390 aa19.83■□□□□ 0.76
TRIM54-201ENST00000296098 GNG13Q9P2W3 67 aa19.83■□□□□ 0.76
TRIM54-201ENST00000296098 SLC31A2O15432 143 aa19.82■□□□□ 0.76
TRIM54-201ENST00000296098 CD55P08174 381 aa19.82■□□□□ 0.76
TRIM54-201ENST00000296098 KIR2DS2P43631 304 aa19.82■□□□□ 0.76
TRIM54-201ENST00000296098 CEBPGP53567 150 aa19.82■□□□□ 0.76
TRIM54-201ENST00000296098 OR2B8PP59922 312 aa19.82■□□□□ 0.76
TRIM54-201ENST00000296098 TBR1Q16650 682 aa19.82■□□□□ 0.76
TRIM54-201ENST00000296098 PRAMEF5Q5TYX0 476 aa19.82■□□□□ 0.76
TRIM54-201ENST00000296098 LCN15Q6UWW0 184 aa19.82■□□□□ 0.76
TRIM54-201ENST00000296098 SSX7Q7RTT5 188 aa19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms