RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 SCGB1D4Q6XE38 83 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 IDI2-AS1Q9NZ38 188 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 PRNDQ9UKY0 176 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 CCL21O00585 134 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 NME4O00746 187 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 FAM189A1O60320 539 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 TSPOP30536 169 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 SSR4P51571 173 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 ATP5G2Q06055 141 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 OR10S1Q8NGN2 331 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 OR10G8Q8NGN5 311 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 TMEM230Q96A57 120 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 PRAP1Q96NZ9 151 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 C11orf68Q9H3H3 251 aaKnown RBP3.07□□□□□ -1.92
SCN1A-221ENST00000641996 RARRES3Q9UL19 164 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 ANKRD26Q9UPS8 1709 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 ADAMTSL4Q6UY14 1074 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 SHISA9B4DS77 424 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 PCBD1P61457 104 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 UBE2L3P68036 154 aaKnown RBP3.07□□□□□ -1.92
SCN1A-221ENST00000641996 LINC00299Q6ZSB3 139 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 MMD2Q8IY49 270 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 LINC01561Q8N1V8 128 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 FMC1Q96HJ9 113 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 FLVCR1Q9Y5Y0 555 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 PTPRDP23468 1912 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 TEX48A0A1B0GUV7 120 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 CDC14CA4D256 554 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 CLDN6P56747 220 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 HSPE1P61604 102 aaKnown RBP3.07□□□□□ -1.92
SCN1A-221ENST00000641996 PPP1R27Q86WC6 154 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 SAXO1Q8IYX7 474 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 TTC9CQ8N5M4 171 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 OSR1Q8TAX0 266 aaPredicted RBP3.07□□□□□ -1.92
SCN1A-221ENST00000641996 SDHCQ99643 169 aaPredicted RBP3.07□□□□□ -1.92
SCN1A-221ENST00000641996 EPDR1Q9UM22 224 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 ZNF443Q9Y2A4 671 aaPredicted RBP3.07□□□□□ -1.92
SCN1A-221ENST00000641996 IFT172Q9UG01 1749 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 TRBV9A0A0B4J1U6 114 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 A0A0J9YY10 115 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 TMEM212A6NML5 194 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 IL3P08700 152 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 PIPP12273 146 aaPredicted RBP3.07□□□□□ -1.92
SCN1A-221ENST00000641996 LGALS3P17931 250 aaKnown RBP3.07□□□□□ -1.92
SCN1A-221ENST00000641996 SRSF3P84103 164 aaKnown RBP3.07□□□□□ -1.92
SCN1A-221ENST00000641996 RUNX1Q01196 453 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 FUT5Q11128 374 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 EEF1DP3Q658K8 133 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 C5orf24Q7Z6I8 188 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 PELI3Q8N2H9 469 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 HAPLN2Q9GZV7 340 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 VSIG4Q9Y279 399 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 QRICH2Q9H0J4 1663 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 SYNJ1O43426 1573 aa3.07□□□□□ -1.92
SCN1A-221ENST00000641996 hADV38S2A0JD32 116 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 NPFFO15130 113 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 UNGP13051 313 aaPredicted RBP3.06□□□□□ -1.92
SCN1A-221ENST00000641996 CD33P20138 364 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 S100A4P26447 101 aaKnown RBP3.06□□□□□ -1.92
SCN1A-221ENST00000641996 ORMDL2Q53FV1 153 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 ZNF627Q7L945 461 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 LAMC1P11047 1609 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 TRAV13-1A0A0B4J241 112 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 hDV102S1A0JD36 115 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 C2CD4BA6NLJ0 364 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 ARSIQ5FYB1 569 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 COPS9Q8WXC6 57 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 DUSP21Q9H596 190 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 SIX2Q9NPC8 291 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 CACNG5Q9UF02 275 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 CARHSP1Q9Y2V2 147 aaKnown RBP3.06□□□□□ -1.92
SCN1A-221ENST00000641996 RGPD2P0DJD1 1756 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 FOLR1P15328 257 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 TNFRSF4P43489 277 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 CDK5R2Q13319 367 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 FAM166AQ6J272 317 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 SLC25A47Q6Q0C1 308 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 OOSP2Q86WS3 158 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 TEX45Q8NA69 505 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 CNRIP1Q96F85 164 aaPredicted RBP3.06□□□□□ -1.92
SCN1A-221ENST00000641996 OR2W1Q9Y3N9 320 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 PRR19A6NJB7 356 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 ZNF736B4DX44 427 aaPredicted RBP3.06□□□□□ -1.92
SCN1A-221ENST00000641996 WNT10BO00744 389 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 VWCEQ96DN2 955 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 MRPL20Q9BYC9 149 aaKnown RBP3.06□□□□□ -1.92
SCN1A-221ENST00000641996 DEFB129Q9H1M3 183 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 ADGRL2O95490 1459 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 PRXQ9BXM0 1461 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 M0R082 166 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 TMEM50AO95807 157 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 PRDX1Q06830 199 aaKnown RBP3.06□□□□□ -1.92
SCN1A-221ENST00000641996 ZNF56Q15929 161 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 SPTSSBQ8NFR3 76 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 OR5K2Q8NHB8 316 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 ZNF417Q8TAU3 575 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 P2RY11Q96G91 374 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 ST20Q9HBF5 79 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 CXCL13O43927 109 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 SLC25A6P12236 298 aa3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms