RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 RNF133Q8WVZ7 376 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 GHSRQ92847 366 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 CST9LQ9H4G1 147 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 CBLN4Q9NTU7 201 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 TNFSF18Q9UNG2 199 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 FUT9Q9Y231 359 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 CICQ96RK0 1608 aaPredicted RBP2.45□□□□□ -2.02
SCN1A-219ENST00000641575 RICTORQ6R327 1708 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 MARF1Q9Y4F3 1742 aaKnown RBP2.45□□□□□ -2.02
SCN1A-219ENST00000641575 PROB1E7EW31 1015 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 SPRY3O43610 288 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 FGF17O60258 216 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 CLDN12P56749 244 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 SELENOWP63302 87 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 NNATQ16517 81 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 SLC48A1Q6P1K1 146 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 COLCA1Q6ZS62 124 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 MOGAT3Q86VF5 341 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 PDPNQ86YL7 162 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 ZIC4Q8N9L1 334 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 OR5M9Q8NGP3 310 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 SRD5A3Q9H8P0 318 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 PCOLCE2Q9UKZ9 415 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 TBX21Q9UL17 535 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 TNFRSF18Q9Y5U5 241 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 IGHV3OR16-12A0A075B7B8 117 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 C2CD4BA6NLJ0 364 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 SRD5A2P31213 254 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 CLDN15P56746 228 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 RPL8P62917 257 aaKnown RBP2.45□□□□□ -2.02
SCN1A-219ENST00000641575 MRM1Q6IN84 353 aaKnown RBP2.45□□□□□ -2.02
SCN1A-219ENST00000641575 GLIPR1L1Q6UWM5 242 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 Q6ZNB5 142 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 SLC25A26Q70HW3 274 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 NUBPLQ8TB37 319 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 SMIM19Q96E16 107 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 ADGRL4Q9HBW9 690 aa2.45□□□□□ -2.02
SCN1A-219ENST00000641575 QSER1Q2KHR3 1735 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 LRP4O75096 1905 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 COL16A1Q07092 1604 aaPredicted RBP2.44□□□□□ -2.02
SCN1A-219ENST00000641575 H3BMH7 237 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 SMAD7O15105 426 aaKnown RBP2.44□□□□□ -2.02
SCN1A-219ENST00000641575 MOSPD3O75425 235 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 LGALS3P17931 250 aaKnown RBP2.44□□□□□ -2.02
SCN1A-219ENST00000641575 HTR6P50406 440 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 TMEM258P61165 79 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 GAGE2EQ4V326 116 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 MESTQ5EB52 335 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 MRPL14Q6P1L8 145 aaKnown RBP2.44□□□□□ -2.02
SCN1A-219ENST00000641575 PRSS54Q6PEW0 395 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 Q6ZVL8 140 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 GTF3AQ92664 365 aaKnown RBP2.44□□□□□ -2.02
SCN1A-219ENST00000641575 PTP4A1Q93096 173 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 HGDQ93099 445 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 SPSB1Q96BD6 273 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 LYRM4Q9HD34 91 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 SDR39U1Q9NRG7 319 aaPredicted RBP2.44□□□□□ -2.02
SCN1A-219ENST00000641575 RPRMQ9NS64 109 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 GAGE2DQ9UEU5 116 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 PTPRSQ13332 1948 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 PKD1L3Q7Z443 1732 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 C11orf94C9JXX5 98 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 ZNF593O00488 134 aaPredicted RBP2.44□□□□□ -2.02
SCN1A-219ENST00000641575 TAPBPO15533 448 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 PLAUP00749 431 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 MYF5P13349 255 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 TDGF1P3P51864 188 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 SUMO2P61956 95 aaKnown RBP2.44□□□□□ -2.02
SCN1A-219ENST00000641575 RBMY1FQ15415 496 aaKnown RBP2.44□□□□□ -2.02
SCN1A-219ENST00000641575 FBXL22Q6P050 247 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 BIVMQ86UB2 503 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 OR52E5Q8NH55 327 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 ISOC2Q96AB3 205 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 ZNF2Q9BSG1 426 aaPredicted RBP2.44□□□□□ -2.02
SCN1A-219ENST00000641575 SH2D2AQ9NP31 389 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 UQCC1Q9NVA1 299 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 OPN4Q9UHM6 478 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 NSD1Q96L73 2696 aaPredicted RBP2.44□□□□□ -2.02
SCN1A-219ENST00000641575 J3QR06 171 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 IGKV5-2P06315 115 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 CD22P20273 847 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 S100A7L2Q5SY68 101 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 C4orf32Q8N8J7 132 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 SNRNP40Q96DI7 357 aaKnown RBP2.44□□□□□ -2.02
SCN1A-219ENST00000641575 SSBP3Q9BWW4 388 aaPredicted RBP2.44□□□□□ -2.02
SCN1A-219ENST00000641575 PSORS1C1Q9UIG5 152 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 HES2Q9Y543 173 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 A1L4Q6 167 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 HMSDA8MTL9 139 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 PAX1P15863 534 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 SLC25A16P16260 332 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 SHBQ15464 509 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 PMCHL1Q16048 86 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 OXLD1Q5BKU9 147 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 SAXO2Q658L1 398 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 RPS27LQ71UM5 84 aaKnown RBP2.44□□□□□ -2.02
SCN1A-219ENST00000641575 C16orf82Q7Z2V1 217 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 STPG2Q8N412 459 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 MRPL24Q96A35 216 aaKnown RBP2.44□□□□□ -2.02
SCN1A-219ENST00000641575 UBE2E2Q96LR5 201 aa2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms