RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 TRAT1Q6PIZ9 186 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 AMZ2Q86W34 360 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 TPRX1Q8N7U7 411 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 ZNF436-AS1Q8NC38 126 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-216ENST00000637968 KLHDC9Q8NEP7 349 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 OR1L3Q8NH93 324 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 PIGTQ969N2 578 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 GNB1LQ9BYB4 327 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 MAP1LC3AQ9H492 121 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 PSENENQ9NZ42 101 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 IL36GQ9NZH8 169 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 HEBP2Q9Y5Z4 205 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 IGKV6D-21A0A0A0MT36 114 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 UBE2L5PA0A1B0GUS4 154 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 A0A1W2PS18 150 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 FAM181BA6NEQ2 426 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 C1QTNF9BB2RNN3 333 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 CHST1O43916 411 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 NDUFB4O95168 129 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 GPR75O95800 540 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 AMY1AP04745 511 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 FSTP19883 344 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 GCSHP23434 173 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 RPS27P42677 84 aaKnown RBP4.94□□□□□ -1.62
SCN1A-216ENST00000637968 OR3A4PP47883 348 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 C1orf100Q5SVJ3 147 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 TXNDC8Q6A555 127 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.94□□□□□ -1.622e-6■■□□□ 12
SCN1A-216ENST00000637968 DEFB123Q8N688 67 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 OR2M3Q8NG83 312 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 ZNF480Q8WV37 535 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 HOXB13Q92826 284 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-216ENST00000637968 SRSF8Q9BRL6 282 aaKnown RBP4.94□□□□□ -1.62
SCN1A-216ENST00000637968 TMEM204Q9BSN7 226 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 RNF115Q9Y4L5 304 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 ADAMTS7Q9UKP4 1686 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 IL9P15248 144 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 GDF1P27539 372 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 RPS24P62847 133 aaKnown RBP4.93□□□□□ -1.62
SCN1A-216ENST00000637968 IL15RAQ13261 267 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 MMD2Q8IY49 270 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 OR4X2Q8NGF9 303 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 APOBEC3DQ96AK3 386 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-216ENST00000637968 COMMD5Q9GZQ3 224 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 KLRF1Q9NZS2 232 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 ERRFI1Q9UJM3 462 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-216ENST00000637968 TRGV10A0A0A0MS01 117 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 ISG15P05161 165 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 NGFRP08138 427 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 VSIG8P0DPA2 414 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 ARG2P78540 354 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 SPEM2Q0P670 501 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 CATR1Q13166 79 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 OR8B8Q15620 311 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 FAM69BQ5VUD6 431 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 LRRC25Q8N386 305 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-216ENST00000637968 TTC9CQ8N5M4 171 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 NHLRC2Q8NBF2 726 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 SPATA25Q9BR10 227 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 STRADBQ9C0K7 418 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 PELI2Q9HAT8 420 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 NPIPB5A8MRT5 1133 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 FOXH1O75593 365 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 CRYAAP02489 173 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 SUMO3P55854 103 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-216ENST00000637968 PLP2Q04941 152 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 ETDBQ3ZM63 59 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 ACSM6Q6P461 480 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 SYT8Q8NBV8 401 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 DOK4Q8TEW6 326 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 PP6455Q8WZ26 134 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 SGK494Q96LW2 274 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 TRIB1Q96RU8 372 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 PLEKHA3Q9HB20 300 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 TRAV25A0A0B4J276 109 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 C11orf98E9PRG8 122 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 NRG2O14511 850 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-216ENST00000637968 TNFP01375 233 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 IGLV3-25P01717 112 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 OR9G9P0C7N8 305 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 FCER1GP30273 86 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 DAP3P51398 398 aaKnown RBP4.93□□□□□ -1.62
SCN1A-216ENST00000637968 TSPO2Q5TGU0 170 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 MARCH3Q86UD3 253 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 ZNF740Q8NDX6 193 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 OTOSQ8NHW6 89 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 DAZLQ92904 295 aaKnown RBP4.93□□□□□ -1.62
SCN1A-216ENST00000637968 TXNDC17Q9BRA2 123 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 TMEM126AQ9H061 195 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 R4GMQ9 66 aa4.93□□□□□ -1.62
SCN1A-216ENST00000637968 TRBV5-4A0A0C4DH59 114 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 C3orf85A0A1B0GTC6 90 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 A0A1W2PP11 408 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 hDV102S1A0JD36 115 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 LINC01553A4QN01 128 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 KIR2DS3K7RE56 304 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 SOCS1O15524 211 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 NPPBP16860 134 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 HOXD9P28356 352 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-216ENST00000637968 LHX2P50458 406 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms