RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 PPP1CCP36873 323 aaKnown RBP15.23■□□□□ 0.03
CLN3-260ENST00000637578 C9orf152Q5JTZ5 239 aa15.23■□□□□ 0.03
CLN3-260ENST00000637578 C10orf99Q6UWK7 81 aa15.23■□□□□ 0.03
CLN3-260ENST00000637578 ST6GALNAC5Q9BVH7 336 aa15.23■□□□□ 0.03
CLN3-260ENST00000637578 IGKV1D-8A0A087WSZ0 117 aa15.22■□□□□ 0.03
CLN3-260ENST00000637578 ZNF736B4DX44 427 aaPredicted RBP15.22■□□□□ 0.03
CLN3-260ENST00000637578 FABP7O15540 132 aa15.22■□□□□ 0.03
CLN3-260ENST00000637578 MOSP00540 346 aa15.22■□□□□ 0.03
CLN3-260ENST00000637578 KIR2DS1Q14954 304 aa15.22■□□□□ 0.03
CLN3-260ENST00000637578 PDLIM3Q53GG5 364 aaPredicted RBP15.22■□□□□ 0.03
CLN3-260ENST00000637578 Q6ZS49 121 aa15.22■□□□□ 0.03
CLN3-260ENST00000637578 SNX29P2Q8IUI4 249 aa15.22■□□□□ 0.03
CLN3-260ENST00000637578 Q8N9W7 124 aa15.22■□□□□ 0.03
CLN3-260ENST00000637578 R3HDM4Q96D70 268 aa15.22■□□□□ 0.03
CLN3-260ENST00000637578 ABHD14AQ9BUJ0 271 aa15.22■□□□□ 0.03
CLN3-260ENST00000637578 A3GALT2U3KPV4 340 aa15.22■□□□□ 0.03
CLN3-260ENST00000637578 IGKV1-6A0A0C4DH72 117 aa15.21■□□□□ 0.03
CLN3-260ENST00000637578 RGS11O94810 467 aa15.21■□□□□ 0.03
CLN3-260ENST00000637578 GSTT2P0CG29 244 aa15.21■□□□□ 0.03
CLN3-260ENST00000637578 GSTT2BP0CG30 244 aa15.21■□□□□ 0.03
CLN3-260ENST00000637578 SRSF7Q16629 238 aaKnown RBP eCLIP15.21■□□□□ 0.03
CLN3-260ENST00000637578 GVQW1Q8N7I0 195 aa15.21■□□□□ 0.03
CLN3-260ENST00000637578 OR8H1Q8NGG4 311 aa15.21■□□□□ 0.03
CLN3-260ENST00000637578 DIRAS2Q96HU8 199 aa15.21■□□□□ 0.03
CLN3-260ENST00000637578 TSSC4Q9Y5U2 329 aaPredicted RBP15.21■□□□□ 0.03
CLN3-260ENST00000637578 MEIS3P1A6NDR6 274 aa15.2■□□□□ 0.02
CLN3-260ENST00000637578 PRSS3P35030 304 aa15.2■□□□□ 0.02
CLN3-260ENST00000637578 KPRPQ5T749 579 aaPredicted RBP15.2■□□□□ 0.02
CLN3-260ENST00000637578 SAMD5Q5TGI4 173 aa15.2■□□□□ 0.02
CLN3-260ENST00000637578 OR4X2Q8NGF9 303 aa15.2■□□□□ 0.02
CLN3-260ENST00000637578 OR4A4PQ8NGN8 299 aa15.2■□□□□ 0.02
CLN3-260ENST00000637578 BATF3Q9NR55 127 aa15.2■□□□□ 0.02
CLN3-260ENST00000637578 LIN7CQ9NUP9 197 aaKnown RBP15.2■□□□□ 0.02
CLN3-260ENST00000637578 OR1A1Q9P1Q5 309 aa15.2■□□□□ 0.02
CLN3-260ENST00000637578 PLXNB1O43157 2135 aa15.2■□□□□ 0.02
CLN3-260ENST00000637578 TCRBV4S1A1TA0A5B7 111 aa15.19■□□□□ 0.02
CLN3-260ENST00000637578 FCER2P06734 321 aa15.19■□□□□ 0.02
CLN3-260ENST00000637578 TNFSF8P32971 234 aa15.19■□□□□ 0.02
CLN3-260ENST00000637578 LSAMPQ13449 338 aa15.19■□□□□ 0.02
CLN3-260ENST00000637578 IGSF11Q5DX21 431 aa15.19■□□□□ 0.02
CLN3-260ENST00000637578 ZNF833PQ6ZTB9 187 aa15.19■□□□□ 0.02
CLN3-260ENST00000637578 CHPT1Q8WUD6 406 aa15.19■□□□□ 0.02
CLN3-260ENST00000637578 NOL4LQ96MY1 436 aaPredicted RBP15.19■□□□□ 0.02
CLN3-260ENST00000637578 ABHD1Q96SE0 405 aa15.19■□□□□ 0.02
CLN3-260ENST00000637578 CABLES2Q9BTV7 478 aa15.19■□□□□ 0.02
CLN3-260ENST00000637578 SLC23A1Q9UHI7 598 aa15.19■□□□□ 0.02
CLN3-260ENST00000637578 PSMB11A5LHX3 300 aa15.19■□□□□ 0.02
CLN3-260ENST00000637578 LINC01548A6NM66 108 aa15.19■□□□□ 0.02
CLN3-260ENST00000637578 NCBP2LA6PVI3 153 aaKnown RBP15.19■□□□□ 0.02
CLN3-260ENST00000637578 CBX5P45973 191 aa15.19■□□□□ 0.02
CLN3-260ENST00000637578 SLC35E3Q7Z769 313 aa15.19■□□□□ 0.02
CLN3-260ENST00000637578 HOGA1Q86XE5 327 aa15.19■□□□□ 0.02
CLN3-260ENST00000637578 C1QL4Q86Z23 238 aa15.19■□□□□ 0.02
CLN3-260ENST00000637578 FAM71E2Q8N5Q1 922 aa15.19■□□□□ 0.02
CLN3-260ENST00000637578 WFDC9Q8NEX5 89 aa15.19■□□□□ 0.02
CLN3-260ENST00000637578 GPX8Q8TED1 209 aa15.19■□□□□ 0.02
CLN3-260ENST00000637578 S1PR3Q99500 378 aa15.19■□□□□ 0.02
CLN3-260ENST00000637578 PARP12Q9H0J9 701 aaKnown RBP15.19■□□□□ 0.02
CLN3-260ENST00000637578 IFI27L2Q9H2X8 130 aa15.19■□□□□ 0.02
CLN3-260ENST00000637578 G3V4G9 280 aa15.18■□□□□ 0.02
CLN3-260ENST00000637578 ITGB1BP1O14713 200 aa15.18■□□□□ 0.02
CLN3-260ENST00000637578 BET1O15155 118 aa15.18■□□□□ 0.02
CLN3-260ENST00000637578 HSPA12AO43301 675 aa15.18■□□□□ 0.02
CLN3-260ENST00000637578 TPPPO94811 219 aa15.18■□□□□ 0.02
CLN3-260ENST00000637578 F2RL1P55085 397 aa15.18■□□□□ 0.02
CLN3-260ENST00000637578 BEAN1Q3B7T3 259 aa15.18■□□□□ 0.02
CLN3-260ENST00000637578 BEST4Q8NFU0 473 aa15.18■□□□□ 0.02
CLN3-260ENST00000637578 OR2AK2Q8NG84 335 aa15.18■□□□□ 0.02
CLN3-260ENST00000637578 RBMXL1Q96E39 390 aaKnown RBP15.18■□□□□ 0.02
CLN3-260ENST00000637578 AGMATQ9BSE5 352 aa15.18■□□□□ 0.02
CLN3-260ENST00000637578 SCPEP1Q9HB40 452 aa15.18■□□□□ 0.02
CLN3-260ENST00000637578 IFT46Q9NQC8 304 aa15.18■□□□□ 0.02
CLN3-260ENST00000637578 ANXA10Q9UJ72 324 aa15.18■□□□□ 0.02
CLN3-260ENST00000637578 NOTCH3Q9UM47 2321 aa15.17■□□□□ 0.02
CLN3-260ENST00000637578 SAA2-SAA4A0A096LPE2 208 aa15.17■□□□□ 0.02
CLN3-260ENST00000637578 A0A1W2PRX2 142 aa15.17■□□□□ 0.02
CLN3-260ENST00000637578 SAA2P0DJI9 122 aaPredicted RBP15.17■□□□□ 0.02
CLN3-260ENST00000637578 ZBTB25P24278 435 aa15.17■□□□□ 0.02
CLN3-260ENST00000637578 CEACAM6P40199 344 aa15.17■□□□□ 0.02
CLN3-260ENST00000637578 GPR12P47775 334 aa15.17■□□□□ 0.02
CLN3-260ENST00000637578 CNPY1Q3B7I2 92 aa15.17■□□□□ 0.02
CLN3-260ENST00000637578 RNASE12Q5GAN4 147 aaKnown RBP15.17■□□□□ 0.02
CLN3-260ENST00000637578 FAM71F2Q6NXP2 309 aa15.17■□□□□ 0.02
CLN3-260ENST00000637578 ZNF329Q86UD4 541 aa15.17■□□□□ 0.02
CLN3-260ENST00000637578 SNAPC3Q92966 411 aa15.17■□□□□ 0.02
CLN3-260ENST00000637578 NABP2Q9BQ15 211 aa15.17■□□□□ 0.02
CLN3-260ENST00000637578 ZNF251Q9BRH9 671 aa15.17■□□□□ 0.02
CLN3-260ENST00000637578 MRPL20Q9BYC9 149 aaKnown RBP15.17■□□□□ 0.02
CLN3-260ENST00000637578 ANAPC10Q9UM13 185 aa15.17■□□□□ 0.02
CLN3-260ENST00000637578 DIRAS3O95661 229 aa15.16■□□□□ 0.02
CLN3-260ENST00000637578 S100A5P33763 92 aa15.16■□□□□ 0.02
CLN3-260ENST00000637578 OR3A3P47888 321 aa15.16■□□□□ 0.02
CLN3-260ENST00000637578 IL18Q14116 193 aa15.16■□□□□ 0.02
CLN3-260ENST00000637578 FOXRED2Q8IWF2 684 aa15.16■□□□□ 0.02
CLN3-260ENST00000637578 STPG2Q8N412 459 aa15.16■□□□□ 0.02
CLN3-260ENST00000637578 PRKDCP78527 4128 aaKnown RBP15.16■□□□□ 0.02
CLN3-260ENST00000637578 TRBV6-7A0A0A0MS04 114 aa15.15■□□□□ 0.02
CLN3-260ENST00000637578 AP4M1O00189 453 aa15.15■□□□□ 0.02
CLN3-260ENST00000637578 SULT1C2O00338 296 aa15.15■□□□□ 0.02
CLN3-260ENST00000637578 OR6Q1Q8NGQ2 317 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms