RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 TMEM18Q96B42 140 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 GPR146Q96CH1 333 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 TXN2Q99757 166 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 MESP1Q9BRJ9 268 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 P4HTMQ9NXG6 502 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 KMT2BQ9UMN6 2715 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-214ENST00000637038 IGKV3D-15A0A087WSY6 115 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 TMEM30CPA0ZSE6 113 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 NPIPB11E5RHQ5 1161 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 HSPB6O14558 160 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 HS3ST1O14792 307 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 ZNF737O75373 536 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 SCTP09683 121 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 PATE4P0C8F1 98 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 IAPPP10997 89 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 KLK2P20151 261 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 FAM3BP58499 235 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-214ENST00000637038 SRYQ05066 204 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 RAB31Q13636 194 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 RSPO1Q2MKA7 263 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-214ENST00000637038 DEFB109BQ30KR1 87 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 BSXQ3C1V8 233 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 SPANXN5Q5MJ07 72 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 ACY3Q96HD9 319 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 ADGRG7Q96K78 797 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 NOL4LQ96MY1 436 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-214ENST00000637038 TXNDC17Q9BRA2 123 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 CTNNBIP1Q9NSA3 81 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-214ENST00000637038 TAAR3PQ9P1P4 343 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 KLF13Q9Y2Y9 288 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-214ENST00000637038 C2CD3Q4AC94 2353 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 ACACAQ13085 2346 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 TRBV24-1A0A075B6N3 115 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 TNFSF12O43508 249 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 YIF1AO95070 293 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 ZNF205O95201 554 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 UMODP07911 640 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 FAM87AP0C7U9 286 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 PF4V1P10720 104 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 SRP14P37108 136 aaKnown RBP3.39□□□□□ -1.87
SCN1A-214ENST00000637038 ELLP55199 621 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-214ENST00000637038 ERVK-16P61578 105 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 RUNX1Q01196 453 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 PDCD1Q15116 288 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 ELOBQ15370 118 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 GABRA6Q16445 453 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 SPSB3Q6PJ21 355 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 ZNF383Q8NA42 475 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 Q8WTZ3 238 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 NEIL1Q96FI4 390 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-214ENST00000637038 PACRGQ96M98 296 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-214ENST00000637038 SRD5A3Q9H8P0 318 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 SH2D2AQ9NP31 389 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 PRSS50Q9UI38 385 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 PPP1R3CQ9UQK1 317 aa3.39□□□□□ -1.87
SCN1A-214ENST00000637038 UBE2L5PA0A1B0GUS4 154 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 A0A1W2PPV4 95 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 XKRY2A2RUG3 117 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 C22orf46C9J442 243 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 F6UZH7 168 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 H3BP45 60 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 KLRC4-KLRK1H3BQV0 150 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 SLC33A1O00400 549 aaPredicted RBP3.38□□□□□ -1.87
SCN1A-214ENST00000637038 DVL1O14640 695 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 CELA2AP08217 269 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 MMP7P09237 267 aaPredicted RBP3.38□□□□□ -1.87
SCN1A-214ENST00000637038 PSG2P11465 335 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 FABP4P15090 132 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 GALR1P47211 349 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 RND2P52198 227 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 MEF2BQ02080 365 aaPredicted RBP3.38□□□□□ -1.87
SCN1A-214ENST00000637038 HGFACQ04756 655 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 PMS2P11Q13670 270 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 USF2Q15853 346 aaPredicted RBP3.38□□□□□ -1.87
SCN1A-214ENST00000637038 LRRC75BQ2VPJ9 315 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 CYP2G1PQ6ZSU1 146 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 H2BFWTQ7Z2G1 175 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 OR5R1Q8NH85 324 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 FAM222BQ8WU58 562 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 OR5P3Q8WZ94 311 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 AGMATQ9BSE5 352 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 IL19Q9UHD0 177 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 ZDHHC8Q9ULC8 765 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 DCHS1Q96JQ0 3298 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 RP1P56715 2156 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 A0A096LPE4 126 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 A0A1W2PPZ6 126 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 PRRG2O14669 202 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 PDE6DO43924 150 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 WDR1O75083 606 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 KBTBD11O94819 623 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 NXPH3O95157 252 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 VENTXO95231 258 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 GCGP01275 180 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 TRGC2P03986 189 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 B3GALT5-AS1P59052 145 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 OR8G2PQ6IF36 304 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 COLCA1Q6ZS62 124 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 LHFPL4Q7Z7J7 247 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 GGNQ86UU5 652 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms