RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 LIN7CQ9NUP9 197 aaKnown RBP16.45■□□□□ 0.22
CLN3-240ENST00000631023 EIF4EP06730 217 aaKnown RBP16.44■□□□□ 0.22
CLN3-240ENST00000631023 TAS2R20P59543 309 aa16.44■□□□□ 0.22
CLN3-240ENST00000631023 ARPC4P59998 168 aa16.44■□□□□ 0.22
CLN3-240ENST00000631023 ACTBP60709 375 aa16.44■□□□□ 0.22
CLN3-240ENST00000631023 CENPVQ7Z7K6 275 aaPredicted RBP16.44■□□□□ 0.22
CLN3-240ENST00000631023 Q8N9W7 124 aa16.44■□□□□ 0.22
CLN3-240ENST00000631023 PLXNB1O43157 2135 aa16.44■□□□□ 0.22
CLN3-240ENST00000631023 H7C2Y5 167 aa16.43■□□□□ 0.22
CLN3-240ENST00000631023 M0QZ24 198 aa16.43■□□□□ 0.22
CLN3-240ENST00000631023 PTHLHP12272 177 aa16.43■□□□□ 0.22
CLN3-240ENST00000631023 F2RL1P55085 397 aa16.43■□□□□ 0.22
CLN3-240ENST00000631023 FAM131AQ6UXB0 335 aa16.43■□□□□ 0.22
CLN3-240ENST00000631023 GVQW1Q8N7I0 195 aa16.43■□□□□ 0.22
CLN3-240ENST00000631023 OR5AN1Q8NGI8 311 aa16.43■□□□□ 0.22
CLN3-240ENST00000631023 IFT46Q9NQC8 304 aa16.43■□□□□ 0.22
CLN3-240ENST00000631023 WASHC3Q9Y3C0 194 aa16.43■□□□□ 0.22
CLN3-240ENST00000631023 OR2W1Q9Y3N9 320 aa16.43■□□□□ 0.22
CLN3-240ENST00000631023 H0YJW9 148 aa16.43■□□□□ 0.22
CLN3-240ENST00000631023 M0R1X1 148 aa16.43■□□□□ 0.22
CLN3-240ENST00000631023 HPGDSO60760 199 aa16.43■□□□□ 0.22
CLN3-240ENST00000631023 PROP1O75360 226 aa16.43■□□□□ 0.22
CLN3-240ENST00000631023 MMDQ15546 238 aa16.43■□□□□ 0.22
CLN3-240ENST00000631023 GLDNQ6ZMI3 551 aaPredicted RBP16.43■□□□□ 0.22
CLN3-240ENST00000631023 DRAXINQ8NBI3 349 aaPredicted RBP16.43■□□□□ 0.22
CLN3-240ENST00000631023 MRPS7Q9Y2R9 242 aaKnown RBP16.43■□□□□ 0.22
CLN3-240ENST00000631023 FBXO24O75426 580 aa16.42■□□□□ 0.22
CLN3-240ENST00000631023 RBBP9O75884 186 aa16.42■□□□□ 0.22
CLN3-240ENST00000631023 IGHG2P01859 326 aa16.42■□□□□ 0.22
CLN3-240ENST00000631023 PRSS3P35030 304 aa16.42■□□□□ 0.22
CLN3-240ENST00000631023 LUMP51884 338 aaPredicted RBP16.42■□□□□ 0.22
CLN3-240ENST00000631023 SPCS2Q15005 226 aa16.42■□□□□ 0.22
CLN3-240ENST00000631023 SLC35E3Q7Z769 313 aa16.42■□□□□ 0.22
CLN3-240ENST00000631023 FOXRED2Q8IWF2 684 aa16.42■□□□□ 0.22
CLN3-240ENST00000631023 C11orf44Q8N8P7 122 aa16.42■□□□□ 0.22
CLN3-240ENST00000631023 NECAP2Q9NVZ3 263 aa16.42■□□□□ 0.22
CLN3-240ENST00000631023 SDHAF2Q9NX18 166 aa16.42■□□□□ 0.22
CLN3-240ENST00000631023 KIAA1456Q9P272 454 aa16.42■□□□□ 0.22
CLN3-240ENST00000631023 FAM25AB3EWG3 89 aa16.41■□□□□ 0.22
CLN3-240ENST00000631023 FAM25CB3EWG5 89 aa16.41■□□□□ 0.22
CLN3-240ENST00000631023 FAM25GB3EWG6 89 aa16.41■□□□□ 0.22
CLN3-240ENST00000631023 APOA2P02652 100 aa16.41■□□□□ 0.22
CLN3-240ENST00000631023 ELK1P19419 428 aa16.41■□□□□ 0.22
CLN3-240ENST00000631023 NFYAP23511 347 aaPredicted RBP16.41■□□□□ 0.22
CLN3-240ENST00000631023 PRR31Q5SQ13 230 aa16.41■□□□□ 0.22
CLN3-240ENST00000631023 FAM71E2Q8N5Q1 922 aa16.41■□□□□ 0.22
CLN3-240ENST00000631023 OR5AU1Q8NGC0 362 aa16.41■□□□□ 0.22
CLN3-240ENST00000631023 WIPF2Q8TF74 440 aaPredicted RBP16.41■□□□□ 0.22
CLN3-240ENST00000631023 RNF5Q99942 180 aa16.41■□□□□ 0.22
CLN3-240ENST00000631023 NBR2O15453 112 aa16.4■□□□□ 0.22
CLN3-240ENST00000631023 KCNAB3O43448 404 aa16.4■□□□□ 0.22
CLN3-240ENST00000631023 SLC22A5O76082 557 aa16.4■□□□□ 0.22
CLN3-240ENST00000631023 HLA-DQB1P01920 261 aa16.4■□□□□ 0.22
CLN3-240ENST00000631023 NPBQ8NG41 125 aa16.4■□□□□ 0.22
CLN3-240ENST00000631023 RBMXL1Q96E39 390 aaKnown RBP16.4■□□□□ 0.22
CLN3-240ENST00000631023 MEIS3P1A6NDR6 274 aa16.39■□□□□ 0.21
CLN3-240ENST00000631023 TAGLNQ01995 201 aaKnown RBP16.39■□□□□ 0.21
CLN3-240ENST00000631023 C2orf68Q2NKX9 166 aa16.39■□□□□ 0.21
CLN3-240ENST00000631023 PDPNQ86YL7 162 aa16.39■□□□□ 0.21
CLN3-240ENST00000631023 ZNF383Q8NA42 475 aa16.39■□□□□ 0.21
CLN3-240ENST00000631023 OR5AP2Q8NGF4 316 aa16.39■□□□□ 0.21
CLN3-240ENST00000631023 CHPT1Q8WUD6 406 aa16.39■□□□□ 0.21
CLN3-240ENST00000631023 ADTRPQ96IZ2 230 aa16.39■□□□□ 0.21
CLN3-240ENST00000631023 RITA1Q96K30 269 aa16.39■□□□□ 0.21
CLN3-240ENST00000631023 TRRAPQ9Y4A5 3859 aa16.39■□□□□ 0.21
CLN3-240ENST00000631023 PKD1L1Q8TDX9 2849 aa16.39■□□□□ 0.21
CLN3-240ENST00000631023 J3QRK9 145 aa16.38■□□□□ 0.21
CLN3-240ENST00000631023 FCER2P06734 321 aa16.38■□□□□ 0.21
CLN3-240ENST00000631023 CD28P10747 220 aa16.38■□□□□ 0.21
CLN3-240ENST00000631023 THBS3P49746 956 aa16.38■□□□□ 0.21
CLN3-240ENST00000631023 ZNF645Q8N7E2 425 aa16.38■□□□□ 0.21
CLN3-240ENST00000631023 ISOC1Q96CN7 298 aa16.38■□□□□ 0.21
CLN3-240ENST00000631023 SCPEP1Q9HB40 452 aa16.38■□□□□ 0.21
CLN3-240ENST00000631023 AP4M1O00189 453 aa16.38■□□□□ 0.21
CLN3-240ENST00000631023 TUSC2O75896 110 aa16.38■□□□□ 0.21
CLN3-240ENST00000631023 OR5H8P0DN80 308 aa16.38■□□□□ 0.21
CLN3-240ENST00000631023 CBX3Q13185 183 aa16.38■□□□□ 0.21
CLN3-240ENST00000631023 SNX29P2Q8IUI4 249 aa16.38■□□□□ 0.21
CLN3-240ENST00000631023 SNAPC3Q92966 411 aa16.38■□□□□ 0.21
CLN3-240ENST00000631023 FLYWCH2Q96CP2 140 aaKnown RBP16.38■□□□□ 0.21
CLN3-240ENST00000631023 SLC35D1Q9NTN3 355 aa16.38■□□□□ 0.21
CLN3-240ENST00000631023 MGAM2Q2M2H8 2515 aa16.37■□□□□ 0.21
CLN3-240ENST00000631023 PSMB11A5LHX3 300 aa16.37■□□□□ 0.21
CLN3-240ENST00000631023 RGS5O15539 181 aa16.37■□□□□ 0.21
CLN3-240ENST00000631023 NDUFA3O95167 84 aa16.37■□□□□ 0.21
CLN3-240ENST00000631023 CNTFRP26992 372 aa16.37■□□□□ 0.21
CLN3-240ENST00000631023 FCGR2CP31995 323 aa16.37■□□□□ 0.21
CLN3-240ENST00000631023 LINC00205P59089 165 aa16.37■□□□□ 0.21
CLN3-240ENST00000631023 TAS2R46P59540 309 aa16.37■□□□□ 0.21
CLN3-240ENST00000631023 RPS16P62249 146 aaKnown RBP16.37■□□□□ 0.21
CLN3-240ENST00000631023 SLC35B1P78383 322 aa16.37■□□□□ 0.21
CLN3-240ENST00000631023 CDK10Q15131 360 aa16.37■□□□□ 0.21
CLN3-240ENST00000631023 C5orf64Q2M2E5 130 aa16.37■□□□□ 0.21
CLN3-240ENST00000631023 LIN54Q6MZP7 749 aa16.37■□□□□ 0.21
CLN3-240ENST00000631023 OR4X2Q8NGF9 303 aa16.37■□□□□ 0.21
CLN3-240ENST00000631023 C15orf40Q8WUR7 153 aa16.37■□□□□ 0.21
CLN3-240ENST00000631023 NOL4LQ96MY1 436 aaPredicted RBP16.37■□□□□ 0.21
CLN3-240ENST00000631023 TSNAXQ99598 290 aaKnown RBP16.37■□□□□ 0.21
CLN3-240ENST00000631023 GON7Q9BXV9 100 aa16.37■□□□□ 0.21
CLN3-240ENST00000631023 CCDC59Q9P031 241 aaKnown RBP16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms