RNA–Protein interactions for RNA: ENST00000618395.4

COL5A1-208, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL5A1, Length 8,437 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-208ENST00000618395 H0Y980 276 aa13.15□□□□□ -0.3
COL5A1-208ENST00000618395 YPEL5P62699 121 aa13.15□□□□□ -0.3
COL5A1-208ENST00000618395 MYOZ1Q9NP98 299 aaPredicted RBP13.15□□□□□ -0.3
COL5A1-208ENST00000618395 ZDBF2Q9HCK1 2354 aa13.15□□□□□ -0.3
COL5A1-208ENST00000618395 TNFSF13O75888 250 aa13.15□□□□□ -0.3
COL5A1-208ENST00000618395 ADRA2AP08913 450 aa13.15□□□□□ -0.3
COL5A1-208ENST00000618395 LGALS7P47929 136 aa13.15□□□□□ -0.3
COL5A1-208ENST00000618395 VAX1Q5SQQ9 334 aa13.15□□□□□ -0.3
COL5A1-208ENST00000618395 MRGPRDQ8TDS7 321 aa13.15□□□□□ -0.3
COL5A1-208ENST00000618395 A0A0B4J2E0 115 aa13.15□□□□□ -0.3
COL5A1-208ENST00000618395 A0A1B0GX12 115 aa13.15□□□□□ -0.3
COL5A1-208ENST00000618395 A0A1B0GX78 115 aa13.15□□□□□ -0.3
COL5A1-208ENST00000618395 C3orf80F5H4A9 247 aa13.15□□□□□ -0.3
COL5A1-208ENST00000618395 ARAP2Q8WZ64 1704 aa13.15□□□□□ -0.3
COL5A1-208ENST00000618395 NRN1Q9NPD7 142 aa13.15□□□□□ -0.3
COL5A1-208ENST00000618395 GDE1Q9NZC3 331 aa13.14□□□□□ -0.31
COL5A1-208ENST00000618395 HIGD1AQ9Y241 93 aa13.14□□□□□ -0.31
COL5A1-208ENST00000618395 COL11A1P12107 1806 aaPredicted RBP13.14□□□□□ -0.31
COL5A1-208ENST00000618395 TOGARAM1Q9Y4F4 1720 aa13.14□□□□□ -0.31
COL5A1-208ENST00000618395 CDCA3Q99618 268 aaPredicted RBP13.14□□□□□ -0.31
COL5A1-208ENST00000618395 C1orf43Q9BWL3 253 aa13.14□□□□□ -0.31
COL5A1-208ENST00000618395 NPDC1Q9NQX5 325 aaPredicted RBP13.14□□□□□ -0.31
COL5A1-208ENST00000618395 NRG2O14511 850 aaPredicted RBP13.14□□□□□ -0.31
COL5A1-208ENST00000618395 H2BFSP57053 126 aa13.14□□□□□ -0.31
COL5A1-208ENST00000618395 FAM19A2Q8N3H0 131 aa13.14□□□□□ -0.31
COL5A1-208ENST00000618395 PRSS23O95084 383 aa13.14□□□□□ -0.31
COL5A1-208ENST00000618395 HIST1H2BLQ99880 126 aa13.14□□□□□ -0.31
COL5A1-208ENST00000618395 TNFSF15O95150 251 aa13.14□□□□□ -0.31
COL5A1-208ENST00000618395 C16orf52Q8NHV5 167 aa13.14□□□□□ -0.31
COL5A1-208ENST00000618395 MMP25Q9NPA2 562 aa13.14□□□□□ -0.31
COL5A1-208ENST00000618395 PCNX1Q96RV3 2341 aa13.14□□□□□ -0.31
COL5A1-208ENST00000618395 TRAV12-3A0A0B4J271 114 aa13.13□□□□□ -0.31
COL5A1-208ENST00000618395 IQCF3P0C7M6 154 aa13.13□□□□□ -0.31
COL5A1-208ENST00000618395 HSD52Q0P140 79 aa13.13□□□□□ -0.31
COL5A1-208ENST00000618395 KRTCAP3Q53RY4 240 aa13.13□□□□□ -0.31
COL5A1-208ENST00000618395 TAF15Q92804 592 aaKnown RBP eCLIP13.13□□□□□ -0.31
COL5A1-208ENST00000618395 ZNF479Q96JC4 524 aa13.13□□□□□ -0.31
COL5A1-208ENST00000618395 TARM1B6A8C7 271 aa13.13□□□□□ -0.31
COL5A1-208ENST00000618395 RPS11P62280 158 aaKnown RBP eCLIP13.13□□□□□ -0.31
COL5A1-208ENST00000618395 OR52M1Q8NGK5 317 aa13.13□□□□□ -0.31
COL5A1-208ENST00000618395 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.13□□□□□ -0.31
COL5A1-208ENST00000618395 J3KRW8 73 aa13.13□□□□□ -0.31
COL5A1-208ENST00000618395 DUSP2Q05923 314 aa13.13□□□□□ -0.31
COL5A1-208ENST00000618395 C10orf111Q8N326 155 aa13.13□□□□□ -0.31
COL5A1-208ENST00000618395 C18orf15Q96N68 181 aa13.13□□□□□ -0.31
COL5A1-208ENST00000618395 P2RY6Q15077 328 aa13.13□□□□□ -0.31
COL5A1-208ENST00000618395 TPSD1Q9BZJ3 242 aa13.13□□□□□ -0.31
COL5A1-208ENST00000618395 ONECUT1Q9UBC0 465 aa13.13□□□□□ -0.31
COL5A1-208ENST00000618395 SPATA46Q5T0L3 261 aa13.13□□□□□ -0.31
COL5A1-208ENST00000618395 IL36BQ9NZH7 164 aa13.13□□□□□ -0.31
COL5A1-208ENST00000618395 MED13LQ71F56 2210 aa13.13□□□□□ -0.31
COL5A1-208ENST00000618395 PSG2P11465 335 aa13.13□□□□□ -0.31
COL5A1-208ENST00000618395 VKORC1L1Q8N0U8 176 aa13.13□□□□□ -0.31
COL5A1-208ENST00000618395 IRF3Q14653 427 aa13.13□□□□□ -0.31
COL5A1-208ENST00000618395 FGF13Q92913 245 aa13.13□□□□□ -0.31
COL5A1-208ENST00000618395 SLC25A2Q9BXI2 301 aa13.13□□□□□ -0.31
COL5A1-208ENST00000618395 IL23AQ9NPF7 189 aa13.13□□□□□ -0.31
COL5A1-208ENST00000618395 IGHV3-15A0A0B4J1V0 119 aa13.12□□□□□ -0.31
COL5A1-208ENST00000618395 ATRAIDQ6UW56 229 aa13.12□□□□□ -0.31
COL5A1-208ENST00000618395 FFAR1O14842 300 aa13.12□□□□□ -0.31
COL5A1-208ENST00000618395 SOSTQ9BQB4 213 aa13.12□□□□□ -0.31
COL5A1-208ENST00000618395 KIAA1549Q9HCM3 1950 aa13.12□□□□□ -0.31
COL5A1-208ENST00000618395 PRR35P0CG20 571 aa13.12□□□□□ -0.31
COL5A1-208ENST00000618395 METTL12A8MUP2 240 aa13.12□□□□□ -0.31
COL5A1-208ENST00000618395 PRKNO60260 465 aaPredicted RBP13.12□□□□□ -0.31
COL5A1-208ENST00000618395 DLK2Q6UY11 383 aa13.12□□□□□ -0.31
COL5A1-208ENST00000618395 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.12□□□□□ -0.31
COL5A1-208ENST00000618395 HCFC2Q9Y5Z7 792 aa13.12□□□□□ -0.31
COL5A1-208ENST00000618395 PRR14LQ5THK1 2151 aa13.12□□□□□ -0.31
COL5A1-208ENST00000618395 GPX4P36969 197 aaPredicted RBP13.12□□□□□ -0.31
COL5A1-208ENST00000618395 FRG2CA6NGY1 282 aa13.12□□□□□ -0.31
COL5A1-208ENST00000618395 RTL10Q7L3V2 364 aa13.12□□□□□ -0.31
COL5A1-208ENST00000618395 SPANXDQ9BXN6 97 aa13.12□□□□□ -0.31
COL5A1-208ENST00000618395 C17orf51A8MQB3 221 aa13.11□□□□□ -0.31
COL5A1-208ENST00000618395 PTGESO14684 152 aa13.11□□□□□ -0.31
COL5A1-208ENST00000618395 UMODP07911 640 aa13.11□□□□□ -0.31
COL5A1-208ENST00000618395 RFESDQ8TAC1 157 aa13.11□□□□□ -0.31
COL5A1-208ENST00000618395 PSG1P11464 419 aa13.11□□□□□ -0.31
COL5A1-208ENST00000618395 HOXD9P28356 352 aaPredicted RBP13.11□□□□□ -0.31
COL5A1-208ENST00000618395 GGTLC2Q14390 218 aa13.11□□□□□ -0.31
COL5A1-208ENST00000618395 LINC00596Q86U02 117 aa13.11□□□□□ -0.31
COL5A1-208ENST00000618395 KLK13Q9UKR3 277 aa13.11□□□□□ -0.31
COL5A1-208ENST00000618395 ATP23Q9Y6H3 246 aa13.11□□□□□ -0.31
COL5A1-208ENST00000618395 TRBV7-9A0A0J9YWB2 115 aa13.11□□□□□ -0.31
COL5A1-208ENST00000618395 SERF1AO75920 110 aa13.11□□□□□ -0.31
COL5A1-208ENST00000618395 HIST1H4AP62805 103 aaKnown RBP13.11□□□□□ -0.31
COL5A1-208ENST00000618395 ASB1Q9Y576 335 aa13.11□□□□□ -0.31
COL5A1-208ENST00000618395 CTSVO60911 334 aa13.11□□□□□ -0.31
COL5A1-208ENST00000618395 ETHE1O95571 254 aa13.11□□□□□ -0.31
COL5A1-208ENST00000618395 TMEM78Q5T7P6 136 aa13.11□□□□□ -0.31
COL5A1-208ENST00000618395 TMEM170AQ8WVE7 144 aa13.11□□□□□ -0.31
COL5A1-208ENST00000618395 LPAR2Q9HBW0 351 aa13.11□□□□□ -0.31
COL5A1-208ENST00000618395 DNAJC25-GNG10A0A024R161 153 aa13.11□□□□□ -0.31
COL5A1-208ENST00000618395 NDUFB3O43676 98 aa13.11□□□□□ -0.31
COL5A1-208ENST00000618395 HYPMO75409 117 aa13.11□□□□□ -0.31
COL5A1-208ENST00000618395 TNXAQ16473 311 aa13.11□□□□□ -0.31
COL5A1-208ENST00000618395 CENPWQ5EE01 88 aa13.11□□□□□ -0.31
COL5A1-208ENST00000618395 CST9LQ9H4G1 147 aa13.11□□□□□ -0.31
COL5A1-208ENST00000618395 KLF12Q9Y4X4 402 aa13.11□□□□□ -0.31
COL5A1-208ENST00000618395 RBMY1BA6NDE4 496 aaKnown RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms