RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 SELENOHQ8IZQ5 122 aaKnown RBP11.66□□□□□ -0.54
USP39-220ENST00000613444 LGI3Q8N145 548 aa11.66□□□□□ -0.54
USP39-220ENST00000613444 Q8N7P7 452 aa11.66□□□□□ -0.54
USP39-220ENST00000613444 OR10C1Q96KK4 312 aa11.66□□□□□ -0.54
USP39-220ENST00000613444 PIMREGQ9BSJ6 248 aa11.66□□□□□ -0.54
USP39-220ENST00000613444 SESN1Q9Y6P5 492 aa11.66□□□□□ -0.54
USP39-220ENST00000613444 IGHV4-30-2A0A087WSY4 118 aa11.65□□□□□ -0.54
USP39-220ENST00000613444 SAA2-SAA4A0A096LPE2 208 aa11.65□□□□□ -0.54
USP39-220ENST00000613444 SAA2P0DJI9 122 aaPredicted RBP11.65□□□□□ -0.54
USP39-220ENST00000613444 DUTP33316 252 aaKnown RBP11.65□□□□□ -0.54
USP39-220ENST00000613444 EIF2B2P49770 351 aaKnown RBP11.65□□□□□ -0.54
USP39-220ENST00000613444 NKX2-5P52952 324 aaPredicted RBP11.65□□□□□ -0.54
USP39-220ENST00000613444 ZFP69Q49AA0 526 aa11.65□□□□□ -0.54
USP39-220ENST00000613444 CLEC2AQ6UVW9 174 aa11.65□□□□□ -0.54
USP39-220ENST00000613444 ZNF66Q6ZN08 573 aa11.65□□□□□ -0.54
USP39-220ENST00000613444 LINC00311Q8N616 119 aa11.65□□□□□ -0.54
USP39-220ENST00000613444 OR11H4Q8NGC9 324 aa11.65□□□□□ -0.54
USP39-220ENST00000613444 OR2T35Q8NGX2 323 aa11.65□□□□□ -0.54
USP39-220ENST00000613444 ASB13Q8WXK3 278 aa11.65□□□□□ -0.54
USP39-220ENST00000613444 SEC22AQ96IW7 307 aa11.65□□□□□ -0.54
USP39-220ENST00000613444 TMEM133Q9H2Q1 129 aa11.65□□□□□ -0.54
USP39-220ENST00000613444 IGHV4-61A0A0C4DH41 118 aa11.65□□□□□ -0.54
USP39-220ENST00000613444 A0A1W2PPH5 198 aa11.65□□□□□ -0.54
USP39-220ENST00000613444 RAB29O14966 203 aa11.65□□□□□ -0.54
USP39-220ENST00000613444 IGKV1-39P01597 117 aa11.65□□□□□ -0.54
USP39-220ENST00000613444 IGKV1D-39P04432 117 aa11.65□□□□□ -0.54
USP39-220ENST00000613444 GZMKP49863 264 aa11.65□□□□□ -0.54
USP39-220ENST00000613444 SRPXP78539 464 aa11.65□□□□□ -0.54
USP39-220ENST00000613444 IL15RAQ13261 267 aa11.65□□□□□ -0.54
USP39-220ENST00000613444 TMEM268Q5VZI3 342 aa11.65□□□□□ -0.54
USP39-220ENST00000613444 GGNBP1Q5YKI7 109 aa11.65□□□□□ -0.54
USP39-220ENST00000613444 NOXA1Q86UR1 476 aa11.65□□□□□ -0.54
USP39-220ENST00000613444 SLC35G3Q8N808 338 aa11.65□□□□□ -0.54
USP39-220ENST00000613444 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.65□□□□□ -0.54
USP39-220ENST00000613444 RAB39BQ96DA2 213 aa11.65□□□□□ -0.54
USP39-220ENST00000613444 HSD17B10Q99714 261 aaKnown RBP11.65□□□□□ -0.54
USP39-220ENST00000613444 LIN7CQ9NUP9 197 aaKnown RBP11.65□□□□□ -0.54
USP39-220ENST00000613444 NAV2Q8IVL1 2488 aa11.65□□□□□ -0.54
USP39-220ENST00000613444 FAM25EA8MYX2 175 aa11.64□□□□□ -0.55
USP39-220ENST00000613444 J3QR06 171 aa11.64□□□□□ -0.55
USP39-220ENST00000613444 GSG1LQ6UXU4 331 aa11.64□□□□□ -0.55
USP39-220ENST00000613444 LYG1Q8N1E2 194 aa11.64□□□□□ -0.55
USP39-220ENST00000613444 IL22RA2Q969J5 263 aa11.64□□□□□ -0.55
USP39-220ENST00000613444 METTL8Q9H825 291 aaKnown RBP11.64□□□□□ -0.55
USP39-220ENST00000613444 SVEP1Q4LDE5 3571 aa11.64□□□□□ -0.55
USP39-220ENST00000613444 CSMD1Q96PZ7 3565 aa11.64□□□□□ -0.55
USP39-220ENST00000613444 C13orf42A0A1B0GVH6 325 aa11.64□□□□□ -0.55
USP39-220ENST00000613444 RNF212BA8MTL3 300 aa11.64□□□□□ -0.55
USP39-220ENST00000613444 RAMP3O60896 148 aa11.64□□□□□ -0.55
USP39-220ENST00000613444 NCR3LG1Q68D85 454 aa11.64□□□□□ -0.55
USP39-220ENST00000613444 DRAXINQ8NBI3 349 aaPredicted RBP11.64□□□□□ -0.55
USP39-220ENST00000613444 RBPMSQ93062 196 aaKnown RBP11.64□□□□□ -0.55
USP39-220ENST00000613444 ONECUT1Q9UBC0 465 aa11.64□□□□□ -0.55
USP39-220ENST00000613444 C5orf51A6NDU8 294 aa11.63□□□□□ -0.55
USP39-220ENST00000613444 M0R1W7 72 aa11.63□□□□□ -0.55
USP39-220ENST00000613444 M0R1X1 148 aa11.63□□□□□ -0.55
USP39-220ENST00000613444 ZNF16P17020 682 aaPredicted RBP11.63□□□□□ -0.55
USP39-220ENST00000613444 ARF6P62330 175 aa11.63□□□□□ -0.55
USP39-220ENST00000613444 LCN2P80188 198 aa11.63□□□□□ -0.55
USP39-220ENST00000613444 PRB3Q04118 309 aaPredicted RBP11.63□□□□□ -0.55
USP39-220ENST00000613444 ABHD12Q8N2K0 398 aa11.63□□□□□ -0.55
USP39-220ENST00000613444 OR9G1Q8NH87 305 aa11.63□□□□□ -0.55
USP39-220ENST00000613444 DDB2Q92466 427 aa11.63□□□□□ -0.55
USP39-220ENST00000613444 NMES1Q9C002 83 aa11.63□□□□□ -0.55
USP39-220ENST00000613444 MMP26Q9NRE1 261 aa11.63□□□□□ -0.55
USP39-220ENST00000613444 FAM212BQ9NTI7 297 aaPredicted RBP11.63□□□□□ -0.55
USP39-220ENST00000613444 POLR3KQ9Y2Y1 108 aaPredicted RBP11.63□□□□□ -0.55
USP39-220ENST00000613444 TRAV14DV4A0A0A6YYC5 116 aa11.62□□□□□ -0.55
USP39-220ENST00000613444 IGHV2-26A0A0B4J1V2 119 aa11.62□□□□□ -0.55
USP39-220ENST00000613444 FAM157AC9JC47 383 aa11.62□□□□□ -0.55
USP39-220ENST00000613444 IGLV1-47P01700 117 aa11.62□□□□□ -0.55
USP39-220ENST00000613444 SERPINE2P07093 398 aa11.62□□□□□ -0.55
USP39-220ENST00000613444 DNASE1P24855 282 aa11.62□□□□□ -0.55
USP39-220ENST00000613444 DSCR9P59020 149 aa11.62□□□□□ -0.55
USP39-220ENST00000613444 CATR1Q13166 79 aa11.62□□□□□ -0.55
USP39-220ENST00000613444 NMSQ5H8A3 153 aa11.62□□□□□ -0.55
USP39-220ENST00000613444 ZNF833PQ6ZTB9 187 aa11.62□□□□□ -0.55
USP39-220ENST00000613444 ZNF695Q8IW36 515 aa11.62□□□□□ -0.55
USP39-220ENST00000613444 TCTEX1D2Q8WW35 142 aa11.62□□□□□ -0.55
USP39-220ENST00000613444 ST6GALNAC6Q969X2 333 aa11.62□□□□□ -0.55
USP39-220ENST00000613444 C2orf50Q96LR7 162 aa11.62□□□□□ -0.55
USP39-220ENST00000613444 PDCD10Q9BUL8 212 aa11.62□□□□□ -0.55
USP39-220ENST00000613444 TMED3Q9Y3Q3 217 aa11.62□□□□□ -0.55
USP39-220ENST00000613444 DUXBA0A1W2PPF3 345 aa11.62□□□□□ -0.55
USP39-220ENST00000613444 ZNF137PP52743 207 aa11.62□□□□□ -0.55
USP39-220ENST00000613444 OR2B11Q5JQS5 317 aa11.62□□□□□ -0.55
USP39-220ENST00000613444 C1orf122Q6ZSJ8 110 aa11.62□□□□□ -0.55
USP39-220ENST00000613444 KIR3DL3Q8N743 410 aa11.62□□□□□ -0.55
USP39-220ENST00000613444 TCTEX1D1Q8N7M0 179 aa11.62□□□□□ -0.55
USP39-220ENST00000613444 PPP1R1CQ8WVI7 109 aa11.62□□□□□ -0.55
USP39-220ENST00000613444 RANBP3Q9H6Z4 567 aaPredicted RBP11.62□□□□□ -0.55
USP39-220ENST00000613444 BEX4Q9NWD9 120 aaPredicted RBP11.62□□□□□ -0.55
USP39-220ENST00000613444 IGHV2-70DA0A0C4DH43 119 aa11.61□□□□□ -0.55
USP39-220ENST00000613444 A0A0G2JRQ6 117 aa11.61□□□□□ -0.55
USP39-220ENST00000613444 ENSAO43768 121 aaKnown RBP11.61□□□□□ -0.55
USP39-220ENST00000613444 IFNA21P01568 189 aa11.61□□□□□ -0.55
USP39-220ENST00000613444 VDAC1P21796 283 aa11.61□□□□□ -0.55
USP39-220ENST00000613444 DEFB113Q30KQ7 82 aa11.61□□□□□ -0.55
USP39-220ENST00000613444 HCP5Q6MZN7 132 aa11.61□□□□□ -0.55
USP39-220ENST00000613444 SPAG16Q8N0X2 631 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms