RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 PROP1O75360 226 aa11.61□□□□□ -0.55
UPF1-211ENST00000600868 GAPDHP04406 335 aaKnown RBP11.61□□□□□ -0.55
UPF1-211ENST00000600868 PGAM2P15259 253 aa11.61□□□□□ -0.55
UPF1-211ENST00000600868 SRP14P37108 136 aaKnown RBP11.61□□□□□ -0.55
UPF1-211ENST00000600868 RPL39P5Q59GN2 51 aa11.61□□□□□ -0.55
UPF1-211ENST00000600868 ZNF818PQ6ZRF7 136 aa11.61□□□□□ -0.55
UPF1-211ENST00000600868 DRAM1Q8N682 238 aa11.61□□□□□ -0.55
UPF1-211ENST00000600868 ZDHHC22Q8N966 263 aa11.61□□□□□ -0.55
UPF1-211ENST00000600868 BVESQ8NE79 360 aa11.61□□□□□ -0.55
UPF1-211ENST00000600868 MARCH1Q8TCQ1 289 aa11.61□□□□□ -0.55
UPF1-211ENST00000600868 C17orf50Q8WW18 174 aa11.61□□□□□ -0.55
UPF1-211ENST00000600868 RPEQ96AT9 228 aa11.61□□□□□ -0.55
UPF1-211ENST00000600868 C5orf30Q96GV9 206 aa11.61□□□□□ -0.55
UPF1-211ENST00000600868 MS4A7Q9GZW8 240 aaPredicted RBP11.61□□□□□ -0.55
UPF1-211ENST00000600868 DPAGT1Q9H3H5 408 aa11.61□□□□□ -0.55
UPF1-211ENST00000600868 GPR132Q9UNW8 380 aa11.61□□□□□ -0.55
UPF1-211ENST00000600868 F8P00451 2351 aa11.6□□□□□ -0.55
UPF1-211ENST00000600868 A0A0U1RQK1 487 aa11.6□□□□□ -0.55
UPF1-211ENST00000600868 FAM240BA0A1B0GVZ2 78 aa11.6□□□□□ -0.55
UPF1-211ENST00000600868 NDUFB6O95139 128 aa11.6□□□□□ -0.55
UPF1-211ENST00000600868 CTSDP07339 412 aaPredicted RBP11.6□□□□□ -0.55
UPF1-211ENST00000600868 BAMBIQ13145 260 aa11.6□□□□□ -0.55
UPF1-211ENST00000600868 EIF4EBP1Q13541 118 aaPredicted RBP11.6□□□□□ -0.55
UPF1-211ENST00000600868 DIAPH2-AS1Q14236 149 aa11.6□□□□□ -0.55
UPF1-211ENST00000600868 SSX2Q16385 188 aa11.6□□□□□ -0.55
UPF1-211ENST00000600868 CCDC144NLQ6NUI1 221 aa11.6□□□□□ -0.55
UPF1-211ENST00000600868 IL17RELQ6ZVW7 336 aa11.6□□□□□ -0.55
UPF1-211ENST00000600868 TGIF2LXQ8IUE1 241 aa11.6□□□□□ -0.55
UPF1-211ENST00000600868 CMTM1Q8IZ96 169 aa11.6□□□□□ -0.55
UPF1-211ENST00000600868 OR8H3Q8N146 312 aa11.6□□□□□ -0.55
UPF1-211ENST00000600868 RTN4IP1Q8WWV3 396 aaPredicted RBP11.6□□□□□ -0.55
UPF1-211ENST00000600868 BEX2Q9BXY8 128 aa11.6□□□□□ -0.55
UPF1-211ENST00000600868 MEGF9Q9H1U4 602 aa11.6□□□□□ -0.55
UPF1-211ENST00000600868 COPZ2Q9P299 210 aa11.6□□□□□ -0.55
UPF1-211ENST00000600868 CDC42EP3Q9UKI2 254 aa11.6□□□□□ -0.55
UPF1-211ENST00000600868 VSIG4Q9Y279 399 aa11.6□□□□□ -0.55
UPF1-211ENST00000600868 FAM96BQ9Y3D0 163 aa11.6□□□□□ -0.55
UPF1-211ENST00000600868 HILPDAQ9Y5L2 63 aa11.6□□□□□ -0.55
UPF1-211ENST00000600868 HIVEP2P31629 2446 aa11.59□□□□□ -0.55
UPF1-211ENST00000600868 S100GP29377 79 aa11.59□□□□□ -0.55
UPF1-211ENST00000600868 RND3P61587 244 aa11.59□□□□□ -0.55
UPF1-211ENST00000600868 TUSC1Q2TAM9 212 aa11.59□□□□□ -0.55
UPF1-211ENST00000600868 ZNF66Q6ZN08 573 aa11.59□□□□□ -0.55
UPF1-211ENST00000600868 Q71RC1 249 aaPredicted RBP11.59□□□□□ -0.55
UPF1-211ENST00000600868 DYNAPQ8N1N2 210 aa11.59□□□□□ -0.55
UPF1-211ENST00000600868 DUSP18Q8NEJ0 188 aa11.59□□□□□ -0.55
UPF1-211ENST00000600868 ZFAND2BQ8WV99 257 aa11.59□□□□□ -0.55
UPF1-211ENST00000600868 ADTRPQ96IZ2 230 aa11.59□□□□□ -0.55
UPF1-211ENST00000600868 HSD17B10Q99714 261 aaKnown RBP11.59□□□□□ -0.55
UPF1-211ENST00000600868 RTBDNQ9BSG5 229 aaPredicted RBP11.59□□□□□ -0.55
UPF1-211ENST00000600868 C5orf66Q9H5L9 145 aa11.59□□□□□ -0.55
UPF1-211ENST00000600868 C14orf166Q9Y224 244 aaKnown RBP11.59□□□□□ -0.55
UPF1-211ENST00000600868 IGHV1-3A0A0C4DH29 117 aa11.58□□□□□ -0.56
UPF1-211ENST00000600868 A0A1W2PPI3 338 aa11.58□□□□□ -0.56
UPF1-211ENST00000600868 M0R1X1 148 aa11.58□□□□□ -0.56
UPF1-211ENST00000600868 TCRBP04435 133 aa11.58□□□□□ -0.56
UPF1-211ENST00000600868 FBP1P09467 338 aa11.58□□□□□ -0.56
UPF1-211ENST00000600868 CT45A6P0DMU7 189 aa11.58□□□□□ -0.56
UPF1-211ENST00000600868 CT45A5P0DMU8 189 aa11.58□□□□□ -0.56
UPF1-211ENST00000600868 CT45A7P0DMV0 189 aa11.58□□□□□ -0.56
UPF1-211ENST00000600868 DUTP33316 252 aaKnown RBP11.58□□□□□ -0.56
UPF1-211ENST00000600868 REG1BP48304 166 aa11.58□□□□□ -0.56
UPF1-211ENST00000600868 ARHGDIBP52566 201 aa11.58□□□□□ -0.56
UPF1-211ENST00000600868 SCGB2A2Q13296 93 aa11.58□□□□□ -0.56
UPF1-211ENST00000600868 HABP2Q14520 560 aaPredicted RBP11.58□□□□□ -0.56
UPF1-211ENST00000600868 ABCA11PQ4W5N1 156 aa11.58□□□□□ -0.56
UPF1-211ENST00000600868 PHLDA2Q53GA4 152 aa11.58□□□□□ -0.56
UPF1-211ENST00000600868 NRARPQ7Z6K4 114 aa11.58□□□□□ -0.56
UPF1-211ENST00000600868 BCL6BQ8N143 479 aaPredicted RBP11.58□□□□□ -0.56
UPF1-211ENST00000600868 ENKURQ8TC29 256 aa11.58□□□□□ -0.56
UPF1-211ENST00000600868 NABP2Q9BQ15 211 aa11.58□□□□□ -0.56
UPF1-211ENST00000600868 MRPL20Q9BYC9 149 aaKnown RBP11.58□□□□□ -0.56
UPF1-211ENST00000600868 OCEL1Q9H607 264 aa11.58□□□□□ -0.56
UPF1-211ENST00000600868 SLC2A9Q9NRM0 540 aa11.58□□□□□ -0.56
UPF1-211ENST00000600868 SOX21Q9Y651 276 aaPredicted RBP11.58□□□□□ -0.56
UPF1-211ENST00000600868 NAV3Q8IVL0 2385 aa11.57□□□□□ -0.56
UPF1-211ENST00000600868 SONP18583 2426 aaKnown RBP11.57□□□□□ -0.56
UPF1-211ENST00000600868 VGLL3A8MV65 326 aa11.57□□□□□ -0.56
UPF1-211ENST00000600868 INAFM1C9JVW0 142 aa11.57□□□□□ -0.56
UPF1-211ENST00000600868 PGLYRP1O75594 196 aaPredicted RBP11.57□□□□□ -0.56
UPF1-211ENST00000600868 PTTG1O95997 202 aa11.57□□□□□ -0.56
UPF1-211ENST00000600868 PI3P19957 117 aa11.57□□□□□ -0.56
UPF1-211ENST00000600868 THBS3P49746 956 aa11.57□□□□□ -0.56
UPF1-211ENST00000600868 DYNLT3P51808 116 aa11.57□□□□□ -0.56
UPF1-211ENST00000600868 PIGPP57054 158 aa11.57□□□□□ -0.56
UPF1-211ENST00000600868 TAGLNQ01995 201 aaKnown RBP11.57□□□□□ -0.56
UPF1-211ENST00000600868 AANATQ16613 207 aa11.57□□□□□ -0.56
UPF1-211ENST00000600868 DEFB112Q30KQ8 113 aa11.57□□□□□ -0.56
UPF1-211ENST00000600868 CCDC71LQ8N9Z2 235 aa11.57□□□□□ -0.56
UPF1-211ENST00000600868 ZNF383Q8NA42 475 aa11.57□□□□□ -0.56
UPF1-211ENST00000600868 PRDM13Q9H4Q3 707 aa11.57□□□□□ -0.56
UPF1-211ENST00000600868 NUBP2Q9Y5Y2 271 aa11.57□□□□□ -0.56
UPF1-211ENST00000600868 SVEP1Q4LDE5 3571 aa11.57□□□□□ -0.56
UPF1-211ENST00000600868 LINC00473A8K010 186 aa11.56□□□□□ -0.56
UPF1-211ENST00000600868 RNF212BA8MTL3 300 aa11.56□□□□□ -0.56
UPF1-211ENST00000600868 TIMM23O14925 209 aa11.56□□□□□ -0.56
UPF1-211ENST00000600868 MPPED1O15442 326 aa11.56□□□□□ -0.56
UPF1-211ENST00000600868 TNFSF12O43508 249 aa11.56□□□□□ -0.56
UPF1-211ENST00000600868 SRD5A1P18405 259 aa11.56□□□□□ -0.56
UPF1-211ENST00000600868 PAX6P26367 422 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms