RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 CADM3Q8N126 398 aa12.46□□□□□ -0.41
SS18-215ENST00000580642 LYG1Q8N1E2 194 aa12.46□□□□□ -0.41
SS18-215ENST00000580642 ST6GALNAC6Q969X2 333 aa12.46□□□□□ -0.41
SS18-215ENST00000580642 ABHD14BQ96IU4 210 aa12.46□□□□□ -0.41
SS18-215ENST00000580642 ZNF251Q9BRH9 671 aa12.46□□□□□ -0.41
SS18-215ENST00000580642 SEC22CQ9BRL7 303 aa12.46□□□□□ -0.41
SS18-215ENST00000580642 PCGF1Q9BSM1 259 aa12.46□□□□□ -0.41
SS18-215ENST00000580642 BEX2Q9BXY8 128 aa12.46□□□□□ -0.41
SS18-215ENST00000580642 MED28Q9H204 178 aa12.46□□□□□ -0.41
SS18-215ENST00000580642 BEX1Q9HBH7 125 aa12.46□□□□□ -0.41
SS18-215ENST00000580642 LPAR2Q9HBW0 351 aa12.46□□□□□ -0.41
SS18-215ENST00000580642 RNF150Q9ULK6 438 aa12.46□□□□□ -0.41
SS18-215ENST00000580642 MINOS1-NBL1R4GNA1 71 aa12.46□□□□□ -0.41
SS18-215ENST00000580642 SAA2-SAA4A0A096LPE2 208 aa12.45□□□□□ -0.42
SS18-215ENST00000580642 VGLL3A8MV65 326 aa12.45□□□□□ -0.42
SS18-215ENST00000580642 ODF3BA8MYP8 253 aa12.45□□□□□ -0.42
SS18-215ENST00000580642 OOSP1A8MZH6 123 aa12.45□□□□□ -0.42
SS18-215ENST00000580642 RNF223E7ERA6 249 aa12.45□□□□□ -0.42
SS18-215ENST00000580642 SLC31A2O15432 143 aa12.45□□□□□ -0.42
SS18-215ENST00000580642 SSNA1O43805 119 aa12.45□□□□□ -0.42
SS18-215ENST00000580642 ATG12O94817 140 aa12.45□□□□□ -0.42
SS18-215ENST00000580642 SAA2P0DJI9 122 aaPredicted RBP12.45□□□□□ -0.42
SS18-215ENST00000580642 UCP1P25874 307 aa12.45□□□□□ -0.42
SS18-215ENST00000580642 DUTP33316 252 aaKnown RBP12.45□□□□□ -0.42
SS18-215ENST00000580642 CEACAM3P40198 252 aa12.45□□□□□ -0.42
SS18-215ENST00000580642 GNG10P50151 68 aa12.45□□□□□ -0.42
SS18-215ENST00000580642 UBE2E1P51965 193 aa12.45□□□□□ -0.42
SS18-215ENST00000580642 CBX3Q13185 183 aa12.45□□□□□ -0.42
SS18-215ENST00000580642 DCAF12L2Q5VW00 463 aa12.45□□□□□ -0.42
SS18-215ENST00000580642 FAM53AQ6NSI3 398 aaPredicted RBP12.45□□□□□ -0.42
SS18-215ENST00000580642 LIAT1Q6ZQX7 453 aa12.45□□□□□ -0.42
SS18-215ENST00000580642 VMO1Q7Z5L0 202 aa12.45□□□□□ -0.42
SS18-215ENST00000580642 LGI3Q8N145 548 aa12.45□□□□□ -0.42
SS18-215ENST00000580642 LEAP2Q969E1 77 aa12.45□□□□□ -0.42
SS18-215ENST00000580642 TMEM56Q96MV1 263 aa12.45□□□□□ -0.42
SS18-215ENST00000580642 TMEM222Q9H0R3 208 aa12.45□□□□□ -0.42
SS18-215ENST00000580642 PRELID3BQ9Y3B1 194 aa12.45□□□□□ -0.42
SS18-215ENST00000580642 TMEM56-RWDD3S4R434 201 aa12.45□□□□□ -0.42
SS18-215ENST00000580642 POLQO75417 2590 aa12.44□□□□□ -0.42
SS18-215ENST00000580642 DBX1A6NMT0 343 aa12.44□□□□□ -0.42
SS18-215ENST00000580642 BUB1B-PAK6H3BSN5 160 aa12.44□□□□□ -0.42
SS18-215ENST00000580642 CDS2O95674 445 aa12.44□□□□□ -0.42
SS18-215ENST00000580642 RRASP10301 218 aa12.44□□□□□ -0.42
SS18-215ENST00000580642 HTR1DP28221 377 aa12.44□□□□□ -0.42
SS18-215ENST00000580642 TMEM187Q14656 261 aa12.44□□□□□ -0.42
SS18-215ENST00000580642 TMEM249Q2WGJ8 235 aa12.44□□□□□ -0.42
SS18-215ENST00000580642 MIDNQ504T8 468 aa12.44□□□□□ -0.42
SS18-215ENST00000580642 GLYATL2Q8WU03 294 aa12.44□□□□□ -0.42
SS18-215ENST00000580642 RAB18Q9NP72 206 aa12.44□□□□□ -0.42
SS18-215ENST00000580642 TBL2Q9Y4P3 447 aaKnown RBP12.44□□□□□ -0.42
SS18-215ENST00000580642 LEUTXA8MZ59 168 aa12.43□□□□□ -0.42
SS18-215ENST00000580642 M0R1X1 148 aa12.43□□□□□ -0.42
SS18-215ENST00000580642 PROP1O75360 226 aa12.43□□□□□ -0.42
SS18-215ENST00000580642 SERPINE2P07093 398 aa12.43□□□□□ -0.42
SS18-215ENST00000580642 OR5AC1P0C628 307 aa12.43□□□□□ -0.42
SS18-215ENST00000580642 SULT1A3P0DMM9 295 aa12.43□□□□□ -0.42
SS18-215ENST00000580642 SULT1A4P0DMN0 295 aa12.43□□□□□ -0.42
SS18-215ENST00000580642 EPHA1P21709 976 aa12.43□□□□□ -0.42
SS18-215ENST00000580642 BPIFB3P59826 476 aa12.43□□□□□ -0.42
SS18-215ENST00000580642 ZNF816Q0VGE8 651 aaPredicted RBP12.43□□□□□ -0.42
SS18-215ENST00000580642 DHRS7BQ6IAN0 325 aaPredicted RBP12.43□□□□□ -0.42
SS18-215ENST00000580642 LIN54Q6MZP7 749 aa12.43□□□□□ -0.42
SS18-215ENST00000580642 PNKDQ8N490 385 aa12.43□□□□□ -0.42
SS18-215ENST00000580642 TEX29Q8N6K0 151 aa12.43□□□□□ -0.42
SS18-215ENST00000580642 OR52B4Q8NGK2 314 aa12.43□□□□□ -0.42
SS18-215ENST00000580642 OR4P4Q8NGL7 312 aa12.43□□□□□ -0.42
SS18-215ENST00000580642 MSI2Q96DH6 328 aaKnown RBP12.43□□□□□ -0.42
SS18-215ENST00000580642 TBX15Q96SF7 602 aa12.43□□□□□ -0.42
SS18-215ENST00000580642 AIFM2Q9BRQ8 373 aa12.43□□□□□ -0.42
SS18-215ENST00000580642 HIF1ANQ9NWT6 349 aa12.43□□□□□ -0.42
SS18-215ENST00000580642 DPM3Q9P2X0 92 aa12.43□□□□□ -0.42
SS18-215ENST00000580642 AUP1Q9Y679 476 aa12.43□□□□□ -0.42
SS18-215ENST00000580642 hCG_2014768A0A024R1R8 64 aa12.42□□□□□ -0.42
SS18-215ENST00000580642 LY6LH3BQJ8 138 aa12.42□□□□□ -0.42
SS18-215ENST00000580642 GAPDHP04406 335 aaKnown RBP12.42□□□□□ -0.42
SS18-215ENST00000580642 MC5RP33032 325 aa12.42□□□□□ -0.42
SS18-215ENST00000580642 SLC9A3R2Q15599 337 aa12.42□□□□□ -0.42
SS18-215ENST00000580642 UTF1Q5T230 341 aa12.42□□□□□ -0.42
SS18-215ENST00000580642 HCP5Q6MZN7 132 aa12.42□□□□□ -0.42
SS18-215ENST00000580642 CCDC144NLQ6NUI1 221 aa12.42□□□□□ -0.42
SS18-215ENST00000580642 TGIF2LXQ8IUE1 241 aa12.42□□□□□ -0.42
SS18-215ENST00000580642 CASTOR1Q8WTX7 329 aa12.42□□□□□ -0.42
SS18-215ENST00000580642 TCTEX1D2Q8WW35 142 aa12.42□□□□□ -0.42
SS18-215ENST00000580642 DDB2Q92466 427 aa12.42□□□□□ -0.42
SS18-215ENST00000580642 C5orf30Q96GV9 206 aa12.42□□□□□ -0.42
SS18-215ENST00000580642 TP53RKQ96S44 253 aa12.42□□□□□ -0.42
SS18-215ENST00000580642 PLEKHA2Q9HB19 425 aa12.42□□□□□ -0.42
SS18-215ENST00000580642 SIRT7Q9NRC8 400 aa12.42□□□□□ -0.42
SS18-215ENST00000580642 TMED3Q9Y3Q3 217 aa12.42□□□□□ -0.42
SS18-215ENST00000580642 A0A1W2PPE3 182 aa12.41□□□□□ -0.42
SS18-215ENST00000580642 RNASEK-C17orf49H0YIS7 233 aa12.41□□□□□ -0.42
SS18-215ENST00000580642 TNFSF12O43508 249 aa12.41□□□□□ -0.42
SS18-215ENST00000580642 IFNA21P01568 189 aa12.41□□□□□ -0.42
SS18-215ENST00000580642 IGHV3-7P01780 117 aa12.41□□□□□ -0.42
SS18-215ENST00000580642 ARG1P05089 322 aa12.41□□□□□ -0.42
SS18-215ENST00000580642 IGHV4-31P0DP07 118 aa12.41□□□□□ -0.42
SS18-215ENST00000580642 HOXB4P17483 251 aaPredicted RBP12.41□□□□□ -0.42
SS18-215ENST00000580642 COX7A1P24310 79 aa12.41□□□□□ -0.42
SS18-215ENST00000580642 RAB13P51153 203 aa12.41□□□□□ -0.42
SS18-215ENST00000580642 ARHGDIBP52566 201 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms