RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 C8orf82Q6P1X6 216 aaPredicted RBP11.6□□□□□ -0.55
VPS53-218ENST00000575207 ASCL4Q6XD76 172 aa11.6□□□□□ -0.55
VPS53-218ENST00000575207 PRSS35Q8N3Z0 413 aa11.6□□□□□ -0.55
VPS53-218ENST00000575207 STX19Q8N4C7 294 aa11.6□□□□□ -0.55
VPS53-218ENST00000575207 FAM46BQ96A09 425 aa11.6□□□□□ -0.55
VPS53-218ENST00000575207 SIKE1Q9BRV8 207 aa11.6□□□□□ -0.55
VPS53-218ENST00000575207 SAR1AQ9NR31 198 aa11.6□□□□□ -0.55
VPS53-218ENST00000575207 H3BNX3 289 aa11.59□□□□□ -0.55
VPS53-218ENST00000575207 TGOLN2O43493 480 aa11.59□□□□□ -0.55
VPS53-218ENST00000575207 OR9G9P0C7N8 305 aa11.59□□□□□ -0.55
VPS53-218ENST00000575207 RIPK1Q13546 671 aa11.59□□□□□ -0.55
VPS53-218ENST00000575207 APRG1Q8IVJ8 170 aa11.59□□□□□ -0.55
VPS53-218ENST00000575207 PXT1Q8NFP0 134 aa11.59□□□□□ -0.55
VPS53-218ENST00000575207 OR52L2PQ8NGH6 319 aa11.59□□□□□ -0.55
VPS53-218ENST00000575207 OR5AN1Q8NGI8 311 aa11.59□□□□□ -0.55
VPS53-218ENST00000575207 OR10K1Q8NGX5 313 aa11.59□□□□□ -0.55
VPS53-218ENST00000575207 TLCD1Q96CP7 247 aa11.59□□□□□ -0.55
VPS53-218ENST00000575207 FAM210BQ96KR6 192 aa11.59□□□□□ -0.55
VPS53-218ENST00000575207 JPT1Q9UK76 154 aa11.59□□□□□ -0.55
VPS53-218ENST00000575207 ST3GAL6Q9Y274 331 aa11.59□□□□□ -0.55
VPS53-218ENST00000575207 SNX3O60493 162 aa11.58□□□□□ -0.56
VPS53-218ENST00000575207 CA1P00915 261 aaPredicted RBP11.58□□□□□ -0.56
VPS53-218ENST00000575207 BTF3P20290 206 aaKnown RBP11.58□□□□□ -0.56
VPS53-218ENST00000575207 PJVKQ0ZLH3 352 aa11.58□□□□□ -0.56
VPS53-218ENST00000575207 TRAT1Q6PIZ9 186 aa11.58□□□□□ -0.56
VPS53-218ENST00000575207 OR4K15Q8NH41 348 aa11.58□□□□□ -0.56
VPS53-218ENST00000575207 PHB2Q99623 299 aa11.58□□□□□ -0.56
VPS53-218ENST00000575207 CLN6Q9NWW5 311 aa11.58□□□□□ -0.56
VPS53-218ENST00000575207 MRPL27Q9P0M9 148 aaKnown RBP11.58□□□□□ -0.56
VPS53-218ENST00000575207 ABCD2Q9UBJ2 740 aa11.58□□□□□ -0.56
VPS53-218ENST00000575207 CELA1Q9UNI1 258 aa11.58□□□□□ -0.56
VPS53-218ENST00000575207 EXOSC1Q9Y3B2 195 aaKnown RBP11.58□□□□□ -0.56
VPS53-218ENST00000575207 PRH1P02810 166 aa11.57□□□□□ -0.56
VPS53-218ENST00000575207 MED21Q13503 144 aa11.57□□□□□ -0.56
VPS53-218ENST00000575207 RSU1Q15404 277 aa11.57□□□□□ -0.56
VPS53-218ENST00000575207 ZNF585BQ52M93 769 aa11.57□□□□□ -0.56
VPS53-218ENST00000575207 ATAD3CQ5T2N8 411 aa11.57□□□□□ -0.56
VPS53-218ENST00000575207 ZNF691Q5VV52 312 aa11.57□□□□□ -0.56
VPS53-218ENST00000575207 TMEM244Q5VVB8 128 aa11.57□□□□□ -0.56
VPS53-218ENST00000575207 SSX6Q7RTT6 188 aa11.57□□□□□ -0.56
VPS53-218ENST00000575207 NECAP1Q8NC96 275 aa11.57□□□□□ -0.56
VPS53-218ENST00000575207 OR2AK2Q8NG84 335 aa11.57□□□□□ -0.56
VPS53-218ENST00000575207 IFI27L2Q9H2X8 130 aa11.57□□□□□ -0.56
VPS53-218ENST00000575207 ADGRL4Q9HBW9 690 aa11.57□□□□□ -0.56
VPS53-218ENST00000575207 OR4C46A6NHA9 309 aa11.56□□□□□ -0.56
VPS53-218ENST00000575207 YPEL1O60688 119 aa11.56□□□□□ -0.56
VPS53-218ENST00000575207 IGKV1-16P04430 117 aa11.56□□□□□ -0.56
VPS53-218ENST00000575207 CPEP16870 476 aa11.56□□□□□ -0.56
VPS53-218ENST00000575207 RCC1P18754 421 aaPredicted RBP11.56□□□□□ -0.56
VPS53-218ENST00000575207 ZNF124Q15973 351 aa11.56□□□□□ -0.56
VPS53-218ENST00000575207 C15orf32Q32M92 178 aa11.56□□□□□ -0.56
VPS53-218ENST00000575207 RPL39P5Q59GN2 51 aa11.56□□□□□ -0.56
VPS53-218ENST00000575207 SLC25A30Q5SVS4 291 aa11.56□□□□□ -0.56
VPS53-218ENST00000575207 YPEL2Q96QA6 119 aa11.56□□□□□ -0.56
VPS53-218ENST00000575207 TAF9BQ9HBM6 251 aa11.56□□□□□ -0.56
VPS53-218ENST00000575207 PIPOXQ9P0Z9 390 aa11.56□□□□□ -0.56
VPS53-218ENST00000575207 PKHD1L1Q86WI1 4243 aa11.56□□□□□ -0.56
VPS53-218ENST00000575207 C15orf61A6NNL5 157 aa11.55□□□□□ -0.56
VPS53-218ENST00000575207 GEMIN2O14893 280 aaKnown RBP11.55□□□□□ -0.56
VPS53-218ENST00000575207 RAB29O14966 203 aa11.55□□□□□ -0.56
VPS53-218ENST00000575207 ARPC2O15144 300 aa11.55□□□□□ -0.56
VPS53-218ENST00000575207 ARL3P36405 182 aa11.55□□□□□ -0.56
VPS53-218ENST00000575207 CRISP1P54107 249 aa11.55□□□□□ -0.56
VPS53-218ENST00000575207 RBM11P57052 281 aaKnown RBP11.55□□□□□ -0.56
VPS53-218ENST00000575207 CDK5Q00535 292 aa11.55□□□□□ -0.56
VPS53-218ENST00000575207 NHLRC3Q5JS37 347 aa11.55□□□□□ -0.56
VPS53-218ENST00000575207 LY6G6FQ5SQ64 297 aa11.55□□□□□ -0.56
VPS53-218ENST00000575207 WDR93Q6P2C0 686 aa11.55□□□□□ -0.56
VPS53-218ENST00000575207 C5orf24Q7Z6I8 188 aa11.55□□□□□ -0.56
VPS53-218ENST00000575207 TNFAIP8L1Q8WVP5 186 aa11.55□□□□□ -0.56
VPS53-218ENST00000575207 DYDC1Q8WWB3 177 aa11.55□□□□□ -0.56
VPS53-218ENST00000575207 NICN1Q9BSH3 213 aa11.55□□□□□ -0.56
VPS53-218ENST00000575207 PTTG2Q9NZH5 202 aa11.55□□□□□ -0.56
VPS53-218ENST00000575207 METTL15A6NJ78 407 aa11.54□□□□□ -0.56
VPS53-218ENST00000575207 DMKNQ6E0U4 476 aaPredicted RBP11.54□□□□□ -0.56
VPS53-218ENST00000575207 OR10G2Q8NGC3 310 aa11.54□□□□□ -0.56
VPS53-218ENST00000575207 OR52N1Q8NH53 320 aa11.54□□□□□ -0.56
VPS53-218ENST00000575207 FEVQ99581 238 aa11.54□□□□□ -0.56
VPS53-218ENST00000575207 SAMHD1Q9Y3Z3 626 aaKnown RBP11.54□□□□□ -0.56
VPS53-218ENST00000575207 ZNF705EA8MWA4 302 aaPredicted RBP11.53□□□□□ -0.56
VPS53-218ENST00000575207 MPPED1O15442 326 aa11.53□□□□□ -0.56
VPS53-218ENST00000575207 ST8SIA5O15466 376 aa11.53□□□□□ -0.56
VPS53-218ENST00000575207 MAS1P04201 325 aa11.53□□□□□ -0.56
VPS53-218ENST00000575207 HTD2P86397 168 aa11.53□□□□□ -0.56
VPS53-218ENST00000575207 LPCAT4Q643R3 524 aa11.53□□□□□ -0.56
VPS53-218ENST00000575207 LAMTOR1Q6IAA8 161 aa11.53□□□□□ -0.56
VPS53-218ENST00000575207 OR13C3Q8NGS6 347 aa11.53□□□□□ -0.56
VPS53-218ENST00000575207 TBX5Q99593 518 aa11.53□□□□□ -0.56
VPS53-218ENST00000575207 TEX12Q9BXU0 123 aa11.53□□□□□ -0.56
VPS53-218ENST00000575207 YTHDF1Q9BYJ9 559 aaKnown RBP11.53□□□□□ -0.56
VPS53-218ENST00000575207 FAM192AQ9GZU8 254 aa11.53□□□□□ -0.56
VPS53-218ENST00000575207 X6R8D5 127 aa11.53□□□□□ -0.56
VPS53-218ENST00000575207 GABRPO00591 440 aa11.52□□□□□ -0.57
VPS53-218ENST00000575207 SULT1C4O75897 302 aa11.52□□□□□ -0.57
VPS53-218ENST00000575207 OR2J3O76001 311 aa11.52□□□□□ -0.57
VPS53-218ENST00000575207 ISG15P05161 165 aa11.52□□□□□ -0.57
VPS53-218ENST00000575207 GALP22466 123 aa11.52□□□□□ -0.57
VPS53-218ENST00000575207 NPY1RP25929 384 aa11.52□□□□□ -0.57
VPS53-218ENST00000575207 ELLP55199 621 aaPredicted RBP11.52□□□□□ -0.57
VPS53-218ENST00000575207 MPV17LQ2QL34 196 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms