RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 GLRXP35754 106 aa2.55□□□□□ -2
NUP88-209ENST00000574855 MAP2K4P45985 399 aa2.55□□□□□ -2
NUP88-209ENST00000574855 PSMD8P48556 350 aa2.55□□□□□ -2
NUP88-209ENST00000574855 RPL34P49207 117 aaKnown RBP2.55□□□□□ -2
NUP88-209ENST00000574855 HCFC1P51610 2035 aa2.55□□□□□ -2
NUP88-209ENST00000574855 ERVK-16P61578 105 aa2.55□□□□□ -2
NUP88-209ENST00000574855 ELF3P78545 371 aaPredicted RBP2.55□□□□□ -2
NUP88-209ENST00000574855 CDK5Q00535 292 aa2.55□□□□□ -2
NUP88-209ENST00000574855 ZNF763Q0D2J5 394 aa2.55□□□□□ -2
NUP88-209ENST00000574855 PAFAH1B3Q15102 231 aaKnown RBP2.55□□□□□ -2
NUP88-209ENST00000574855 NSDHLQ15738 373 aa2.55□□□□□ -2
NUP88-209ENST00000574855 MPPED2Q15777 294 aa2.55□□□□□ -2
NUP88-209ENST00000574855 PLPPR5Q32ZL2 321 aa2.55□□□□□ -2
NUP88-209ENST00000574855 SPANXN3Q5MJ09 141 aa2.55□□□□□ -2
NUP88-209ENST00000574855 SLC25A30Q5SVS4 291 aa2.55□□□□□ -2
NUP88-209ENST00000574855 RSBN1Q5VWQ0 802 aaPredicted RBP2.55□□□□□ -2
NUP88-209ENST00000574855 ANKRD22Q5VYY1 191 aa2.55□□□□□ -2
NUP88-209ENST00000574855 KDM4DQ6B0I6 523 aa2.55□□□□□ -2
NUP88-209ENST00000574855 NANOGP8Q6NSW7 305 aa2.55□□□□□ -2
NUP88-209ENST00000574855 TBPL2Q6SJ96 375 aa2.55□□□□□ -2
NUP88-209ENST00000574855 TOMM20LQ6UXN7 152 aa2.55□□□□□ -2
NUP88-209ENST00000574855 TIFABQ6ZNK6 161 aa2.55□□□□□ -2
NUP88-209ENST00000574855 DGAT2L6Q6ZPD8 337 aa2.55□□□□□ -2
NUP88-209ENST00000574855 TMPPEQ6ZT21 453 aa2.55□□□□□ -2
NUP88-209ENST00000574855 TCF24Q7RTU0 167 aa2.55□□□□□ -2
NUP88-209ENST00000574855 DOLPP1Q86YN1 238 aa2.55□□□□□ -2
NUP88-209ENST00000574855 DEFB106AQ8N104 65 aa2.55□□□□□ -2
NUP88-209ENST00000574855 C4orf33Q8N1A6 199 aa2.55□□□□□ -2
NUP88-209ENST00000574855 SLC22A18ASQ8N1D0 253 aa2.55□□□□□ -2
NUP88-209ENST00000574855 FAM71E2Q8N5Q1 922 aa2.55□□□□□ -2
NUP88-209ENST00000574855 UBAC2Q8NBM4 344 aa2.55□□□□□ -2
NUP88-209ENST00000574855 C11orf72Q8NBR9 251 aa2.55□□□□□ -2
NUP88-209ENST00000574855 OR52L1Q8NGH7 329 aa2.55□□□□□ -2
NUP88-209ENST00000574855 OR9Q1Q8NGQ5 310 aa2.55□□□□□ -2
NUP88-209ENST00000574855 OR1N2Q8NGR9 330 aa2.55□□□□□ -2
NUP88-209ENST00000574855 OR2A12Q8NGT7 310 aa2.55□□□□□ -2
NUP88-209ENST00000574855 OR10J6PQ8NGY7 276 aa2.55□□□□□ -2
NUP88-209ENST00000574855 ZNRF2Q8NHG8 242 aa2.55□□□□□ -2
NUP88-209ENST00000574855 FLVCR1-AS1Q8TAF5 88 aa2.55□□□□□ -2
NUP88-209ENST00000574855 LRRC29Q8WV35 223 aa2.55□□□□□ -2
NUP88-209ENST00000574855 DCAKDQ8WVC6 231 aa2.55□□□□□ -2
NUP88-209ENST00000574855 DNAJC9Q8WXX5 260 aa2.55□□□□□ -2
NUP88-209ENST00000574855 RGP1Q92546 391 aaPredicted RBP2.55□□□□□ -2
NUP88-209ENST00000574855 BORCS7Q96B45 105 aa2.55□□□□□ -2
NUP88-209ENST00000574855 TM4SF18Q96CE8 201 aa2.55□□□□□ -2
NUP88-209ENST00000574855 RNF185Q96GF1 192 aa2.55□□□□□ -2
NUP88-209ENST00000574855 BMFQ96LC9 184 aa2.55□□□□□ -2
NUP88-209ENST00000574855 DNAJC30Q96LL9 226 aa2.55□□□□□ -2
NUP88-209ENST00000574855 METTL26Q96S19 204 aa2.55□□□□□ -2
NUP88-209ENST00000574855 EBF4Q9BQW3 602 aa2.55□□□□□ -2
NUP88-209ENST00000574855 SNRNP25Q9BV90 132 aaKnown RBP2.55□□□□□ -2
NUP88-209ENST00000574855 SLC17A9Q9BYT1 436 aa2.55□□□□□ -2
NUP88-209ENST00000574855 NANOGQ9H9S0 305 aa2.55□□□□□ -2
NUP88-209ENST00000574855 GNB4Q9HAV0 340 aa2.55□□□□□ -2
NUP88-209ENST00000574855 FAM49BQ9NUQ9 324 aa2.55□□□□□ -2
NUP88-209ENST00000574855 C14orf105Q9NVL8 296 aa2.55□□□□□ -2
NUP88-209ENST00000574855 COA4Q9NYJ1 87 aa2.55□□□□□ -2
NUP88-209ENST00000574855 MRPL27Q9P0M9 148 aaKnown RBP2.55□□□□□ -2
NUP88-209ENST00000574855 SHPKQ9UHJ6 478 aa2.55□□□□□ -2
NUP88-209ENST00000574855 RARRES3Q9UL19 164 aa2.55□□□□□ -2
NUP88-209ENST00000574855 TP53TG3Q9ULZ0 132 aa2.55□□□□□ -2
NUP88-209ENST00000574855 YTHDF2Q9Y5A9 579 aaKnown RBP2.55□□□□□ -2
NUP88-209ENST00000574855 ZNF780BQ9Y6R6 833 aa2.55□□□□□ -2
NUP88-209ENST00000574855 MYH9P35579 1960 aaKnown RBP2.54□□□□□ -2
NUP88-209ENST00000574855 RBBP6Q7Z6E9 1792 aaKnown RBP2.54□□□□□ -2
NUP88-209ENST00000574855 TRAV8-2A0A0B4J237 113 aa2.54□□□□□ -2
NUP88-209ENST00000574855 TRAV39A0A0B4J263 110 aa2.54□□□□□ -2
NUP88-209ENST00000574855 IGHV3OR16-9A0A0B4J2B5 98 aa2.54□□□□□ -2
NUP88-209ENST00000574855 TRGV8A0A0C4DH27 118 aa2.54□□□□□ -2
NUP88-209ENST00000574855 TEX50A0A1B0GTY4 177 aa2.54□□□□□ -2
NUP88-209ENST00000574855 CCDC160A6NGH7 325 aa2.54□□□□□ -2
NUP88-209ENST00000574855 FOXI3A8MTJ6 420 aaPredicted RBP2.54□□□□□ -2
NUP88-209ENST00000574855 C5orf58C9J3I9 102 aa2.54□□□□□ -2
NUP88-209ENST00000574855 H0Y9J4 135 aa2.54□□□□□ -2
NUP88-209ENST00000574855 TXNDC9O14530 226 aa2.54□□□□□ -2
NUP88-209ENST00000574855 HMGB3O15347 200 aaKnown RBP2.54□□□□□ -2
NUP88-209ENST00000574855 GYG2O15488 501 aa2.54□□□□□ -2
NUP88-209ENST00000574855 HCRTR1O43613 425 aa2.54□□□□□ -2
NUP88-209ENST00000574855 PDCD6O75340 191 aa2.54□□□□□ -2
NUP88-209ENST00000574855 ARL6IP5O75915 188 aa2.54□□□□□ -2
NUP88-209ENST00000574855 C1QBP02746 253 aa2.54□□□□□ -2
NUP88-209ENST00000574855 ATP5G1P05496 136 aa2.54□□□□□ -2
NUP88-209ENST00000574855 RBP1P09455 135 aa2.54□□□□□ -2
NUP88-209ENST00000574855 VDAC1P21796 283 aa2.54□□□□□ -2
NUP88-209ENST00000574855 LMO2P25791 158 aa2.54□□□□□ -2
NUP88-209ENST00000574855 AGTR1P30556 359 aa2.54□□□□□ -2
NUP88-209ENST00000574855 C1QTNF8P60827 252 aa2.54□□□□□ -2
NUP88-209ENST00000574855 RPS23P62266 143 aaKnown RBP2.54□□□□□ -2
NUP88-209ENST00000574855 TBPL1P62380 186 aa2.54□□□□□ -2
NUP88-209ENST00000574855 HPCAP84074 193 aa2.54□□□□□ -2
NUP88-209ENST00000574855 ADIGQ0VDE8 80 aa2.54□□□□□ -2
NUP88-209ENST00000574855 PRDX4Q13162 271 aa2.54□□□□□ -2
NUP88-209ENST00000574855 PMAIP1Q13794 54 aa2.54□□□□□ -2
NUP88-209ENST00000574855 C1DQ13901 141 aaKnown RBP2.54□□□□□ -2
NUP88-209ENST00000574855 PMVKQ15126 192 aa2.54□□□□□ -2
NUP88-209ENST00000574855 GSG1Q2KHT4 349 aa2.54□□□□□ -2
NUP88-209ENST00000574855 C17orf58Q2M2W7 97 aa2.54□□□□□ -2
NUP88-209ENST00000574855 ATAD3CQ5T2N8 411 aa2.54□□□□□ -2
NUP88-209ENST00000574855 AVPI1Q5T686 147 aa2.54□□□□□ -2
NUP88-209ENST00000574855 C9orf64Q5T6V5 341 aa2.54□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 154.1 ms