RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 PGPEP1LA6NFU8 196 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 KIAA1324LA8MWY0 1029 aaPredicted RBP9.28□□□□□ -0.92
CLK3-226ENST00000569406 H3BUT2 72 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 KIR2DS3K7RE56 304 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 HHEXQ03014 270 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 KIR2DS5Q14953 304 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 C12orf54Q6X4T0 127 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 C17orf82Q86X59 251 aaPredicted RBP9.28□□□□□ -0.92
CLK3-226ENST00000569406 CPAMD8Q8IZJ3 1885 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 FAM19A2Q8N3H0 131 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 ZPLD1Q8TCW7 415 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 RTN4RQ9BZR6 473 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 RALYQ9UKM9 306 aaKnown RBP9.28□□□□□ -0.92
CLK3-226ENST00000569406 ABCA7Q8IZY2 2146 aa9.27□□□□□ -0.92
CLK3-226ENST00000569406 IGKV1D-42A0A075B6H8 117 aa9.27□□□□□ -0.93
CLK3-226ENST00000569406 CD5LO43866 347 aa9.27□□□□□ -0.93
CLK3-226ENST00000569406 TNFP01375 233 aa9.27□□□□□ -0.93
CLK3-226ENST00000569406 ZNF17P17021 662 aa9.27□□□□□ -0.93
CLK3-226ENST00000569406 USF1P22415 310 aaPredicted RBP9.27□□□□□ -0.93
CLK3-226ENST00000569406 EWSR1Q01844 656 aaKnown RBP eCLIP9.27□□□□□ -0.933e-7■□□□□ 11.1
CLK3-226ENST00000569406 ZNF141Q15928 474 aa9.27□□□□□ -0.93
CLK3-226ENST00000569406 SP6Q3SY56 376 aa9.27□□□□□ -0.93
CLK3-226ENST00000569406 ALG10Q5BKT4 473 aa9.27□□□□□ -0.93
CLK3-226ENST00000569406 HLA-DQA1Q5Y7H0 255 aa9.27□□□□□ -0.93
CLK3-226ENST00000569406 CYP2G1PQ6ZSU1 146 aa9.27□□□□□ -0.93
CLK3-226ENST00000569406 NPFFR1Q9GZQ6 430 aa9.27□□□□□ -0.93
CLK3-226ENST00000569406 B4GALT7Q9UBV7 327 aa9.27□□□□□ -0.93
CLK3-226ENST00000569406 KIF26BQ2KJY2 2108 aa9.27□□□□□ -0.93
CLK3-226ENST00000569406 A0A1W2PPV4 95 aa9.27□□□□□ -0.93
CLK3-226ENST00000569406 CST7O76096 145 aa9.27□□□□□ -0.93
CLK3-226ENST00000569406 PGCP20142 388 aa9.27□□□□□ -0.93
CLK3-226ENST00000569406 STPG3Q8N7X2 389 aa9.27□□□□□ -0.93
CLK3-226ENST00000569406 RLN3Q8WXF3 142 aa9.27□□□□□ -0.93
CLK3-226ENST00000569406 SIGLEC12Q96PQ1 595 aa9.27□□□□□ -0.93
CLK3-226ENST00000569406 RAB1BQ9H0U4 201 aa9.27□□□□□ -0.93
CLK3-226ENST00000569406 SPENQ96T58 3664 aaKnown RBP9.27□□□□□ -0.93
CLK3-226ENST00000569406 A0A1W2PPC4 97 aa9.27□□□□□ -0.93
CLK3-226ENST00000569406 A0A1W2PR77 199 aa9.27□□□□□ -0.93
CLK3-226ENST00000569406 SFTPDP35247 375 aa9.27□□□□□ -0.93
CLK3-226ENST00000569406 GAGE5Q13069 117 aa9.27□□□□□ -0.93
CLK3-226ENST00000569406 GAGE6Q13070 117 aa9.27□□□□□ -0.93
CLK3-226ENST00000569406 TRAT1Q6PIZ9 186 aa9.27□□□□□ -0.93
CLK3-226ENST00000569406 CHRDL2Q6WN34 429 aa9.27□□□□□ -0.93
CLK3-226ENST00000569406 OR10X1Q8NGY0 326 aa9.27□□□□□ -0.93
CLK3-226ENST00000569406 ANAPC16Q96DE5 110 aa9.27□□□□□ -0.93
CLK3-226ENST00000569406 LRIT1Q9P2V4 623 aa9.27□□□□□ -0.93
CLK3-226ENST00000569406 DHDHQ9UQ10 334 aa9.27□□□□□ -0.93
CLK3-226ENST00000569406 SDK2Q58EX2 2172 aa9.26□□□□□ -0.93
CLK3-226ENST00000569406 SMIM17P0DL12 118 aa9.26□□□□□ -0.93
CLK3-226ENST00000569406 LCN2P80188 198 aa9.26□□□□□ -0.93
CLK3-226ENST00000569406 FUT7Q11130 342 aa9.26□□□□□ -0.93
CLK3-226ENST00000569406 ARFRP1Q13795 201 aa9.26□□□□□ -0.93
CLK3-226ENST00000569406 ZNF562Q6V9R5 426 aa9.26□□□□□ -0.93
CLK3-226ENST00000569406 Q7L0L9 218 aa9.26□□□□□ -0.93
CLK3-226ENST00000569406 OR2K2Q8NGT1 345 aa9.26□□□□□ -0.93
CLK3-226ENST00000569406 MRPL16Q9NX20 251 aaKnown RBP9.26□□□□□ -0.93
CLK3-226ENST00000569406 JKAMPQ9P055 326 aa9.26□□□□□ -0.93
CLK3-226ENST00000569406 ARL2-SNX15V9GYD0 113 aa9.26□□□□□ -0.93
CLK3-226ENST00000569406 KIAA1549Q9HCM3 1950 aa9.26□□□□□ -0.93
CLK3-226ENST00000569406 TRAV9-2A0A087WT02 112 aa9.26□□□□□ -0.93
CLK3-226ENST00000569406 TRBV5-5A0A0J9YX44 114 aa9.26□□□□□ -0.93
CLK3-226ENST00000569406 APOA2P02652 100 aa9.26□□□□□ -0.93
CLK3-226ENST00000569406 ARL4DP49703 201 aa9.26□□□□□ -0.93
CLK3-226ENST00000569406 PET117Q6UWS5 81 aa9.26□□□□□ -0.93
CLK3-226ENST00000569406 SGMS2Q8NHU3 365 aa9.26□□□□□ -0.93
CLK3-226ENST00000569406 C16orf52Q8NHV5 167 aa9.26□□□□□ -0.93
CLK3-226ENST00000569406 VCX2Q9H322 139 aa9.26□□□□□ -0.93
CLK3-226ENST00000569406 ELOVL3Q9HB03 270 aa9.26□□□□□ -0.93
CLK3-226ENST00000569406 C17orf51A8MQB3 221 aa9.25□□□□□ -0.93
CLK3-226ENST00000569406 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.25□□□□□ -0.93
CLK3-226ENST00000569406 J3QR89 54 aa9.25□□□□□ -0.93
CLK3-226ENST00000569406 ZNF217O75362 1048 aa9.25□□□□□ -0.93
CLK3-226ENST00000569406 GYPAP02724 150 aa9.25□□□□□ -0.93
CLK3-226ENST00000569406 FTH1P19P0C7X4 201 aa9.25□□□□□ -0.93
CLK3-226ENST00000569406 CA7P43166 264 aa9.25□□□□□ -0.93
CLK3-226ENST00000569406 FASLGP48023 281 aa9.25□□□□□ -0.93
CLK3-226ENST00000569406 RPS4XP62701 263 aaKnown RBP9.25□□□□□ -0.93
CLK3-226ENST00000569406 MEF2BQ02080 365 aaPredicted RBP9.25□□□□□ -0.93
CLK3-226ENST00000569406 ZNF74Q16587 644 aa9.25□□□□□ -0.93
CLK3-226ENST00000569406 FBXL14Q8N1E6 418 aa9.25□□□□□ -0.93
CLK3-226ENST00000569406 SUMF1Q8NBK3 374 aa9.25□□□□□ -0.93
CLK3-226ENST00000569406 OR5C1Q8NGR4 320 aa9.25□□□□□ -0.93
CLK3-226ENST00000569406 RPS4Y2Q8TD47 263 aa9.25□□□□□ -0.93
CLK3-226ENST00000569406 CT55Q8WUE5 264 aa9.25□□□□□ -0.93
CLK3-226ENST00000569406 ST6GALNAC5Q9BVH7 336 aa9.25□□□□□ -0.93
CLK3-226ENST00000569406 NGBQ9NPG2 151 aa9.25□□□□□ -0.93
CLK3-226ENST00000569406 IGHV5-51A0A0C4DH38 117 aa9.25□□□□□ -0.93
CLK3-226ENST00000569406 S1PR2O95136 353 aa9.25□□□□□ -0.93
CLK3-226ENST00000569406 IGFBP2P18065 325 aa9.25□□□□□ -0.93
CLK3-226ENST00000569406 CFHR1Q03591 330 aa9.25□□□□□ -0.93
CLK3-226ENST00000569406 SLC25A40Q8TBP6 338 aa9.25□□□□□ -0.93
CLK3-226ENST00000569406 GALMQ96C23 342 aa9.25□□□□□ -0.93
CLK3-226ENST00000569406 DGAT2Q96PD7 388 aa9.25□□□□□ -0.93
CLK3-226ENST00000569406 MRPL18Q9H0U6 180 aaKnown RBP9.25□□□□□ -0.93
CLK3-226ENST00000569406 TAS2R4Q9NYW5 299 aa9.25□□□□□ -0.93
CLK3-226ENST00000569406 ZNF835Q9Y2P0 537 aa9.25□□□□□ -0.93
CLK3-226ENST00000569406 EXPH5Q8NEV8 1989 aa9.25□□□□□ -0.93
CLK3-226ENST00000569406 A0A087X0K7 114 aa9.25□□□□□ -0.93
CLK3-226ENST00000569406 IGHV1OR15-9A0A0B4J2B8 117 aa9.25□□□□□ -0.93
CLK3-226ENST00000569406 hCG_38984A0A1B0GV85 526 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms