RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 ZNF833PQ6ZTB9 187 aa10.98□□□□□ -0.65
CLN3-235ENST00000568497 OR8H3Q8N146 312 aa10.98□□□□□ -0.65
CLN3-235ENST00000568497 C8orf31Q8N9H6 132 aa10.98□□□□□ -0.65
CLN3-235ENST00000568497 AGMATQ9BSE5 352 aa10.98□□□□□ -0.65
CLN3-235ENST00000568497 CABLES2Q9BTV7 478 aa10.98□□□□□ -0.65
CLN3-235ENST00000568497 PLSCR3Q9NRY6 295 aa10.98□□□□□ -0.65
CLN3-235ENST00000568497 TRBV6-7A0A0A0MS04 114 aa10.97□□□□□ -0.65
CLN3-235ENST00000568497 IGKV1D-13A0A0B4J2D9 117 aa10.97□□□□□ -0.65
CLN3-235ENST00000568497 OOSP1A8MZH6 123 aa10.97□□□□□ -0.65
CLN3-235ENST00000568497 M0R1X1 148 aa10.97□□□□□ -0.65
CLN3-235ENST00000568497 CTDSP2O14595 271 aa10.97□□□□□ -0.65
CLN3-235ENST00000568497 RGS11O94810 467 aa10.97□□□□□ -0.65
CLN3-235ENST00000568497 IGKV1-13P0DP09 117 aa10.97□□□□□ -0.65
CLN3-235ENST00000568497 VDAC2P45880 294 aaPredicted RBP10.97□□□□□ -0.65
CLN3-235ENST00000568497 RORCP51449 518 aa10.97□□□□□ -0.65
CLN3-235ENST00000568497 ZNF137PP52743 207 aa10.97□□□□□ -0.65
CLN3-235ENST00000568497 TMEM69Q5SWH9 247 aa10.97□□□□□ -0.65
CLN3-235ENST00000568497 STEAP3Q658P3 488 aa10.97□□□□□ -0.65
CLN3-235ENST00000568497 ZNF554Q86TJ5 538 aa10.97□□□□□ -0.65
CLN3-235ENST00000568497 Q8N6K4 173 aa10.97□□□□□ -0.65
CLN3-235ENST00000568497 C5orf56Q8N8D9 126 aa10.97□□□□□ -0.65
CLN3-235ENST00000568497 ZNF383Q8NA42 475 aa10.97□□□□□ -0.65
CLN3-235ENST00000568497 OR4A4PQ8NGN8 299 aa10.97□□□□□ -0.65
CLN3-235ENST00000568497 SNAPC3Q92966 411 aa10.97□□□□□ -0.65
CLN3-235ENST00000568497 HSPB9Q9BQS6 159 aa10.97□□□□□ -0.65
CLN3-235ENST00000568497 GINS4Q9BRT9 223 aa10.97□□□□□ -0.65
CLN3-235ENST00000568497 PRSS22Q9GZN4 317 aa10.97□□□□□ -0.65
CLN3-235ENST00000568497 OR2D2Q9H210 308 aa10.97□□□□□ -0.65
CLN3-235ENST00000568497 MIXL1Q9H2W2 232 aa10.97□□□□□ -0.65
CLN3-235ENST00000568497 RAB9BQ9NP90 201 aa10.97□□□□□ -0.65
CLN3-235ENST00000568497 PITPNC1Q9UKF7 332 aa10.97□□□□□ -0.65
CLN3-235ENST00000568497 MOB4Q9Y3A3 225 aa10.97□□□□□ -0.65
CLN3-235ENST00000568497 CEPT1Q9Y6K0 416 aa10.97□□□□□ -0.65
CLN3-235ENST00000568497 U3KQK5 164 aa10.97□□□□□ -0.65
CLN3-235ENST00000568497 A0A1W2PRX2 142 aa10.96□□□□□ -0.65
CLN3-235ENST00000568497 FAM25AB3EWG3 89 aa10.96□□□□□ -0.65
CLN3-235ENST00000568497 FAM25CB3EWG5 89 aa10.96□□□□□ -0.65
CLN3-235ENST00000568497 FAM25GB3EWG6 89 aa10.96□□□□□ -0.65
CLN3-235ENST00000568497 XRCC3O43542 346 aa10.96□□□□□ -0.65
CLN3-235ENST00000568497 LANCL1O43813 399 aa10.96□□□□□ -0.65
CLN3-235ENST00000568497 RPL5P46777 297 aaKnown RBP10.96□□□□□ -0.65
CLN3-235ENST00000568497 GPR12P47775 334 aa10.96□□□□□ -0.65
CLN3-235ENST00000568497 OR2B11Q5JQS5 317 aa10.96□□□□□ -0.65
CLN3-235ENST00000568497 LCNL1Q6ZST4 164 aa10.96□□□□□ -0.65
CLN3-235ENST00000568497 H1FOOQ8IZA3 346 aaPredicted RBP10.96□□□□□ -0.65
CLN3-235ENST00000568497 Q8N9W7 124 aa10.96□□□□□ -0.65
CLN3-235ENST00000568497 OR10J5Q8NHC4 309 aa10.96□□□□□ -0.65
CLN3-235ENST00000568497 S100A16Q96FQ6 103 aaKnown RBP10.96□□□□□ -0.65
CLN3-235ENST00000568497 ABCG5Q9H222 651 aa10.96□□□□□ -0.65
CLN3-235ENST00000568497 RAB18Q9NP72 206 aa10.96□□□□□ -0.65
CLN3-235ENST00000568497 DIABLOQ9NR28 239 aa10.96□□□□□ -0.65
CLN3-235ENST00000568497 SDHAF2Q9NX18 166 aa10.96□□□□□ -0.65
CLN3-235ENST00000568497 GAR1Q9NY12 217 aaKnown RBP10.96□□□□□ -0.65
CLN3-235ENST00000568497 CCDC160A6NGH7 325 aa10.95□□□□□ -0.66
CLN3-235ENST00000568497 H0YJW9 148 aa10.95□□□□□ -0.66
CLN3-235ENST00000568497 H3BMQ9 156 aa10.95□□□□□ -0.66
CLN3-235ENST00000568497 MOSP00540 346 aa10.95□□□□□ -0.66
CLN3-235ENST00000568497 HLA-DQB1P01920 261 aa10.95□□□□□ -0.66
CLN3-235ENST00000568497 PMP2P02689 132 aa10.95□□□□□ -0.66
CLN3-235ENST00000568497 AADACP22760 399 aa10.95□□□□□ -0.66
CLN3-235ENST00000568497 DTYMKP23919 212 aa10.95□□□□□ -0.66
CLN3-235ENST00000568497 ARHGDIBP52566 201 aa10.95□□□□□ -0.66
CLN3-235ENST00000568497 ACTBP60709 375 aa10.95□□□□□ -0.66
CLN3-235ENST00000568497 PNLIPRP3Q17RR3 467 aa10.95□□□□□ -0.66
CLN3-235ENST00000568497 TMEM30BQ3MIR4 351 aa10.95□□□□□ -0.66
CLN3-235ENST00000568497 LIAT1Q6ZQX7 453 aa10.95□□□□□ -0.66
CLN3-235ENST00000568497 ZNF329Q86UD4 541 aa10.95□□□□□ -0.66
CLN3-235ENST00000568497 THNSL2Q86YJ6 484 aa10.95□□□□□ -0.66
CLN3-235ENST00000568497 LAX1Q8IWV1 398 aa10.95□□□□□ -0.66
CLN3-235ENST00000568497 WFDC9Q8NEX5 89 aa10.95□□□□□ -0.66
CLN3-235ENST00000568497 OR2T10Q8NGZ9 312 aa10.95□□□□□ -0.66
CLN3-235ENST00000568497 ISOC1Q96CN7 298 aa10.95□□□□□ -0.66
CLN3-235ENST00000568497 CLCC1Q96S66 551 aa10.95□□□□□ -0.66
CLN3-235ENST00000568497 TPSG1Q9NRR2 321 aa10.95□□□□□ -0.66
CLN3-235ENST00000568497 RBM7Q9Y580 266 aaKnown RBP10.95□□□□□ -0.66
CLN3-235ENST00000568497 SACSQ9NZJ4 4579 aa10.95□□□□□ -0.66
CLN3-235ENST00000568497 H7C2Y5 167 aa10.94□□□□□ -0.66
CLN3-235ENST00000568497 RAB29O14966 203 aa10.94□□□□□ -0.66
CLN3-235ENST00000568497 ZNF182P17025 639 aaPredicted RBP10.94□□□□□ -0.66
CLN3-235ENST00000568497 KIR2DS1Q14954 304 aa10.94□□□□□ -0.66
CLN3-235ENST00000568497 TCTEX1D4Q5JR98 221 aa10.94□□□□□ -0.66
CLN3-235ENST00000568497 C18orf65Q6ZTR6 163 aa10.94□□□□□ -0.66
CLN3-235ENST00000568497 HOGA1Q86XE5 327 aa10.94□□□□□ -0.66
CLN3-235ENST00000568497 NDUFA11Q86Y39 141 aa10.94□□□□□ -0.66
CLN3-235ENST00000568497 Q8N2B8 174 aa10.94□□□□□ -0.66
CLN3-235ENST00000568497 BEST4Q8NFU0 473 aa10.94□□□□□ -0.66
CLN3-235ENST00000568497 S1PR3Q99500 378 aa10.94□□□□□ -0.66
CLN3-235ENST00000568497 CITED2Q99967 270 aaPredicted RBP10.94□□□□□ -0.66
CLN3-235ENST00000568497 DCUN1D5Q9BTE7 237 aa10.94□□□□□ -0.66
CLN3-235ENST00000568497 FBXL15Q9H469 300 aa10.94□□□□□ -0.66
CLN3-235ENST00000568497 RANBP3Q9H6Z4 567 aaPredicted RBP10.94□□□□□ -0.66
CLN3-235ENST00000568497 EXTL2Q9UBQ6 330 aa10.94□□□□□ -0.66
CLN3-235ENST00000568497 SCOCQ9UIL1 159 aa10.94□□□□□ -0.66
CLN3-235ENST00000568497 ANXA10Q9UJ72 324 aa10.94□□□□□ -0.66
CLN3-235ENST00000568497 ZNF221Q9UK13 617 aa10.94□□□□□ -0.66
CLN3-235ENST00000568497 FCN1O00602 326 aa10.93□□□□□ -0.66
CLN3-235ENST00000568497 TNFSF12O43508 249 aa10.93□□□□□ -0.66
CLN3-235ENST00000568497 IGKV1-16P04430 117 aa10.93□□□□□ -0.66
CLN3-235ENST00000568497 HLA-DMAP28067 261 aa10.93□□□□□ -0.66
CLN3-235ENST00000568497 CD1BP29016 333 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms