RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 HSF4Q9ULV5 492 aa13.02□□□□□ -0.33
CLN3-231ENST00000568422 FCN1O00602 326 aa13.01□□□□□ -0.33
CLN3-231ENST00000568422 CASQ2O14958 399 aaPredicted RBP13.01□□□□□ -0.33
CLN3-231ENST00000568422 SPDEFO95238 335 aa13.01□□□□□ -0.33
CLN3-231ENST00000568422 HSPB1P04792 205 aaKnown RBP13.01□□□□□ -0.33
CLN3-231ENST00000568422 TFAP2AP05549 437 aa13.01□□□□□ -0.33
CLN3-231ENST00000568422 GP9P14770 177 aa13.01□□□□□ -0.33
CLN3-231ENST00000568422 RANBP1P43487 201 aa13.01□□□□□ -0.33
CLN3-231ENST00000568422 SLURP1P55000 103 aa13.01□□□□□ -0.33
CLN3-231ENST00000568422 GLDNQ6ZMI3 551 aaPredicted RBP13.01□□□□□ -0.33
CLN3-231ENST00000568422 PTX4Q96A99 478 aa13.01□□□□□ -0.33
CLN3-231ENST00000568422 TSNAXQ99598 290 aaKnown RBP13.01□□□□□ -0.33
CLN3-231ENST00000568422 C11orf54Q9H0W9 315 aaPredicted RBP13.01□□□□□ -0.33
CLN3-231ENST00000568422 LPAR5Q9H1C0 372 aa13.01□□□□□ -0.33
CLN3-231ENST00000568422 METTL1Q9UBP6 276 aaKnown RBP13.01□□□□□ -0.33
CLN3-231ENST00000568422 LSM2Q9Y333 95 aaKnown RBP13.01□□□□□ -0.33
CLN3-231ENST00000568422 A3GALT2U3KPV4 340 aa13.01□□□□□ -0.33
CLN3-231ENST00000568422 ARSBP15848 533 aa13□□□□□ -0.33
CLN3-231ENST00000568422 SPNP16150 400 aa13□□□□□ -0.33
CLN3-231ENST00000568422 HLA-DRB3P79483 266 aa13□□□□□ -0.33
CLN3-231ENST00000568422 PITPNAQ00169 270 aa13□□□□□ -0.33
CLN3-231ENST00000568422 PSG5Q15238 335 aa13□□□□□ -0.33
CLN3-231ENST00000568422 UNQ5815/PRO19632Q6UWF5 114 aa13□□□□□ -0.33
CLN3-231ENST00000568422 SBSPONQ8IVN8 264 aa13□□□□□ -0.33
CLN3-231ENST00000568422 OR4C12Q96R67 309 aa13□□□□□ -0.33
CLN3-231ENST00000568422 PARP12Q9H0J9 701 aaKnown RBP13□□□□□ -0.33
CLN3-231ENST00000568422 C12orf4Q9NQ89 552 aa13□□□□□ -0.33
CLN3-231ENST00000568422 SCN3BQ9NY72 215 aa13□□□□□ -0.33
CLN3-231ENST00000568422 AK3Q9UIJ7 227 aa13□□□□□ -0.33
CLN3-231ENST00000568422 ZNF221Q9UK13 617 aa13□□□□□ -0.33
CLN3-231ENST00000568422 IGHV4OR15-8A0A075B7B6 117 aa12.99□□□□□ -0.33
CLN3-231ENST00000568422 A0A087WW49 117 aa12.99□□□□□ -0.33
CLN3-231ENST00000568422 A0A0A6YYD4 124 aa12.99□□□□□ -0.33
CLN3-231ENST00000568422 PTGES3LE9PB15 166 aa12.99□□□□□ -0.33
CLN3-231ENST00000568422 SLC17A2O00624 439 aa12.99□□□□□ -0.33
CLN3-231ENST00000568422 SOCS1O15524 211 aa12.99□□□□□ -0.33
CLN3-231ENST00000568422 CPEP16870 476 aa12.99□□□□□ -0.33
CLN3-231ENST00000568422 MED22Q15528 200 aa12.99□□□□□ -0.33
CLN3-231ENST00000568422 TRAM1Q15629 374 aa12.99□□□□□ -0.33
CLN3-231ENST00000568422 PDPNQ86YL7 162 aa12.99□□□□□ -0.33
CLN3-231ENST00000568422 LFNGQ8NES3 379 aa12.99□□□□□ -0.33
CLN3-231ENST00000568422 CASTOR1Q8WTX7 329 aa12.99□□□□□ -0.33
CLN3-231ENST00000568422 ARPC1AQ92747 370 aa12.99□□□□□ -0.33
CLN3-231ENST00000568422 UFD1Q92890 307 aa12.99□□□□□ -0.33
CLN3-231ENST00000568422 RHOVQ96L33 236 aa12.99□□□□□ -0.33
CLN3-231ENST00000568422 RCHY1Q96PM5 261 aa12.99□□□□□ -0.33
CLN3-231ENST00000568422 ELOVL1Q9BW60 279 aa12.99□□□□□ -0.33
CLN3-231ENST00000568422 KCNK15Q9H427 330 aa12.99□□□□□ -0.33
CLN3-231ENST00000568422 PLGRKTQ9HBL7 147 aa12.99□□□□□ -0.33
CLN3-231ENST00000568422 Q9N2K0 584 aa12.99□□□□□ -0.33
CLN3-231ENST00000568422 OR1A1Q9P1Q5 309 aa12.99□□□□□ -0.33
CLN3-231ENST00000568422 ARL6IP5O75915 188 aa12.98□□□□□ -0.33
CLN3-231ENST00000568422 APOA2P02652 100 aa12.98□□□□□ -0.33
CLN3-231ENST00000568422 SERPINB10P48595 397 aa12.98□□□□□ -0.33
CLN3-231ENST00000568422 TPPP2P59282 170 aa12.98□□□□□ -0.33
CLN3-231ENST00000568422 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.98□□□□□ -0.33
CLN3-231ENST00000568422 MUC7Q8TAX7 377 aa12.98□□□□□ -0.33
CLN3-231ENST00000568422 MS4A10Q96PG2 267 aa12.98□□□□□ -0.33
CLN3-231ENST00000568422 CLCC1Q96S66 551 aa12.98□□□□□ -0.33
CLN3-231ENST00000568422 FAM103A1Q9BTL3 118 aaKnown RBP12.98□□□□□ -0.33
CLN3-231ENST00000568422 ZMAT4Q9H898 229 aa12.98□□□□□ -0.33
CLN3-231ENST00000568422 GAB2Q9UQC2 676 aa12.98□□□□□ -0.33
CLN3-231ENST00000568422 ERICH4A6NGS2 130 aa12.97□□□□□ -0.33
CLN3-231ENST00000568422 FOXI3A8MTJ6 420 aaPredicted RBP12.97□□□□□ -0.33
CLN3-231ENST00000568422 H3BUA1 57 aa12.97□□□□□ -0.33
CLN3-231ENST00000568422 PROP1O75360 226 aa12.97□□□□□ -0.33
CLN3-231ENST00000568422 CA2P00918 260 aa12.97□□□□□ -0.33
CLN3-231ENST00000568422 IGHV3-11P01762 117 aa12.97□□□□□ -0.33
CLN3-231ENST00000568422 IGKV1-16P04430 117 aa12.97□□□□□ -0.33
CLN3-231ENST00000568422 SCTP09683 121 aa12.97□□□□□ -0.33
CLN3-231ENST00000568422 FRMD6-AS1P0C7T7 363 aa12.97□□□□□ -0.33
CLN3-231ENST00000568422 PSMA1P25786 263 aaKnown RBP12.97□□□□□ -0.33
CLN3-231ENST00000568422 RPS16P62249 146 aaKnown RBP12.97□□□□□ -0.33
CLN3-231ENST00000568422 MOGAT2Q3SYC2 334 aa12.97□□□□□ -0.33
CLN3-231ENST00000568422 LIPKQ5VXJ0 399 aa12.97□□□□□ -0.33
CLN3-231ENST00000568422 DRAXINQ8NBI3 349 aaPredicted RBP12.97□□□□□ -0.33
CLN3-231ENST00000568422 OR56B1Q8NGI3 324 aa12.97□□□□□ -0.33
CLN3-231ENST00000568422 TMEM203Q969S6 136 aa12.97□□□□□ -0.33
CLN3-231ENST00000568422 CMSS1Q9BQ75 279 aaKnown RBP12.97□□□□□ -0.33
CLN3-231ENST00000568422 HDHD3Q9BSH5 251 aaPredicted RBP12.97□□□□□ -0.33
CLN3-231ENST00000568422 A0A0G2JLM5 398 aa12.96□□□□□ -0.33
CLN3-231ENST00000568422 TRGV3P03979 118 aa12.96□□□□□ -0.33
CLN3-231ENST00000568422 ZP3P21754 424 aa12.96□□□□□ -0.33
CLN3-231ENST00000568422 TMEM50BP56557 158 aa12.96□□□□□ -0.33
CLN3-231ENST00000568422 TPBGQ13641 420 aa12.96□□□□□ -0.33
CLN3-231ENST00000568422 IRF3Q14653 427 aa12.96□□□□□ -0.33
CLN3-231ENST00000568422 FXYD3Q14802 87 aa12.96□□□□□ -0.33
CLN3-231ENST00000568422 P2RY14Q15391 338 aa12.96□□□□□ -0.33
CLN3-231ENST00000568422 RAB11BQ15907 218 aa12.96□□□□□ -0.33
CLN3-231ENST00000568422 CASC10Q5T4H9 136 aa12.96□□□□□ -0.33
CLN3-231ENST00000568422 TMEM91Q6ZNR0 172 aa12.96□□□□□ -0.33
CLN3-231ENST00000568422 OVCH2Q7RTZ1 564 aa12.96□□□□□ -0.33
CLN3-231ENST00000568422 ZNF383Q8NA42 475 aa12.96□□□□□ -0.33
CLN3-231ENST00000568422 ARHGAP5-AS1Q96IT6 56 aa12.96□□□□□ -0.33
CLN3-231ENST00000568422 TMEM68Q96MH6 324 aa12.96□□□□□ -0.33
CLN3-231ENST00000568422 RANGRFQ9HD47 186 aaPredicted RBP12.96□□□□□ -0.33
CLN3-231ENST00000568422 STUB1Q9UNE7 303 aa12.96□□□□□ -0.33
CLN3-231ENST00000568422 HUWE1Q7Z6Z7 4374 aaKnown RBP12.95□□□□□ -0.34
CLN3-231ENST00000568422 C13orf42A0A1B0GVH6 325 aa12.95□□□□□ -0.34
CLN3-231ENST00000568422 TRDCB7Z8K6 153 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms