RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 ZNF596Q8TC21 504 aa24.96■■□□□ 1.59
CTCF-203ENST00000566078 METTL8Q9H825 291 aaKnown RBP24.96■■□□□ 1.59
CTCF-203ENST00000566078 LIN7CQ9NUP9 197 aaKnown RBP24.96■■□□□ 1.59
CTCF-203ENST00000566078 SHPKQ9UHJ6 478 aa24.96■■□□□ 1.59
CTCF-203ENST00000566078 GAB2Q9UQC2 676 aa24.96■■□□□ 1.59
CTCF-203ENST00000566078 KPTNQ9Y664 436 aa24.96■■□□□ 1.59
CTCF-203ENST00000566078 M0R1X1 148 aa24.95■■□□□ 1.58
CTCF-203ENST00000566078 CD300CQ08708 224 aa24.95■■□□□ 1.58
CTCF-203ENST00000566078 LIAT1Q6ZQX7 453 aa24.95■■□□□ 1.58
CTCF-203ENST00000566078 OR10X1Q8NGY0 326 aa24.95■■□□□ 1.58
CTCF-203ENST00000566078 GLYATL2Q8WU03 294 aa24.95■■□□□ 1.58
CTCF-203ENST00000566078 CLEC7AQ9BXN2 247 aa24.95■■□□□ 1.58
CTCF-203ENST00000566078 TMEM222Q9H0R3 208 aa24.95■■□□□ 1.58
CTCF-203ENST00000566078 A0A096LNT2 108 aa24.94■■□□□ 1.58
CTCF-203ENST00000566078 TOR1AO14656 332 aa24.94■■□□□ 1.58
CTCF-203ENST00000566078 PROP1O75360 226 aa24.94■■□□□ 1.58
CTCF-203ENST00000566078 CATR1Q13166 79 aa24.94■■□□□ 1.58
CTCF-203ENST00000566078 ZNF66Q6ZN08 573 aa24.94■■□□□ 1.58
CTCF-203ENST00000566078 C1orf122Q6ZSJ8 110 aa24.94■■□□□ 1.58
CTCF-203ENST00000566078 HSD17B10Q99714 261 aaKnown RBP24.94■■□□□ 1.58
CTCF-203ENST00000566078 PDZD2O15018 2839 aa24.94■■□□□ 1.58
CTCF-203ENST00000566078 DBX1A6NMT0 343 aa24.94■■□□□ 1.58
CTCF-203ENST00000566078 RPL30P62888 115 aaKnown RBP24.94■■□□□ 1.58
CTCF-203ENST00000566078 C1orf229Q6ZS94 237 aaPredicted RBP24.94■■□□□ 1.58
CTCF-203ENST00000566078 TCTEX1D2Q8WW35 142 aa24.94■■□□□ 1.58
CTCF-203ENST00000566078 MSI2Q96DH6 328 aaKnown RBP24.94■■□□□ 1.58
CTCF-203ENST00000566078 ITPR2Q14571 2701 aa24.93■■□□□ 1.58
CTCF-203ENST00000566078 PRTN3P24158 256 aa24.93■■□□□ 1.58
CTCF-203ENST00000566078 DVL1P1P54792 670 aaPredicted RBP24.93■■□□□ 1.58
CTCF-203ENST00000566078 PRSS57Q6UWY2 283 aa24.93■■□□□ 1.58
CTCF-203ENST00000566078 VMO1Q7Z5L0 202 aa24.93■■□□□ 1.58
CTCF-203ENST00000566078 PNKDQ8N490 385 aa24.93■■□□□ 1.58
CTCF-203ENST00000566078 OR13D1Q8NGV5 346 aa24.93■■□□□ 1.58
CTCF-203ENST00000566078 ZNF251Q9BRH9 671 aa24.93■■□□□ 1.58
CTCF-203ENST00000566078 SIRPDQ9H106 197 aa24.93■■□□□ 1.58
CTCF-203ENST00000566078 LINC00473A8K010 186 aa24.92■■□□□ 1.58
CTCF-203ENST00000566078 CCSO14618 274 aa24.92■■□□□ 1.58
CTCF-203ENST00000566078 B3GALNT1O75752 331 aa24.92■■□□□ 1.58
CTCF-203ENST00000566078 UCP1P25874 307 aa24.92■■□□□ 1.58
CTCF-203ENST00000566078 DUTP33316 252 aaKnown RBP24.92■■□□□ 1.58
CTCF-203ENST00000566078 SRPXP78539 464 aa24.92■■□□□ 1.58
CTCF-203ENST00000566078 KRTAP1-3Q8IUG1 177 aa24.92■■□□□ 1.58
CTCF-203ENST00000566078 LHFPL5Q8TAF8 219 aa24.92■■□□□ 1.58
CTCF-203ENST00000566078 TNFRSF14Q92956 283 aa24.92■■□□□ 1.58
CTCF-203ENST00000566078 ST6GAL2Q96JF0 529 aa24.92■■□□□ 1.58
CTCF-203ENST00000566078 S1PR3Q99500 378 aa24.92■■□□□ 1.58
CTCF-203ENST00000566078 RANGRFQ9HD47 186 aaPredicted RBP24.92■■□□□ 1.58
CTCF-203ENST00000566078 SIX6O95475 246 aa24.91■■□□□ 1.58
CTCF-203ENST00000566078 PRRX1P54821 245 aa24.91■■□□□ 1.58
CTCF-203ENST00000566078 LGI3Q8N145 548 aa24.91■■□□□ 1.58
CTCF-203ENST00000566078 DRAXINQ8NBI3 349 aaPredicted RBP24.91■■□□□ 1.58
CTCF-203ENST00000566078 ZNF436Q9C0F3 470 aaPredicted RBP24.91■■□□□ 1.58
CTCF-203ENST00000566078 LINC00205P59089 165 aa24.9■■□□□ 1.58
CTCF-203ENST00000566078 KLRD1Q13241 179 aa24.9■■□□□ 1.58
CTCF-203ENST00000566078 OR2B11Q5JQS5 317 aa24.9■■□□□ 1.58
CTCF-203ENST00000566078 LRTM2Q8N967 370 aa24.9■■□□□ 1.58
CTCF-203ENST00000566078 OR5M8Q8NGP6 311 aa24.9■■□□□ 1.58
CTCF-203ENST00000566078 Q96MF0 132 aa24.9■■□□□ 1.58
CTCF-203ENST00000566078 INSIG2Q9Y5U4 225 aa24.9■■□□□ 1.58
CTCF-203ENST00000566078 RNF223E7ERA6 249 aa24.9■■□□□ 1.58
CTCF-203ENST00000566078 ADAP1O75689 374 aa24.9■■□□□ 1.58
CTCF-203ENST00000566078 HLA-DRB5Q30154 266 aa24.9■■□□□ 1.58
CTCF-203ENST00000566078 TMEM268Q5VZI3 342 aa24.9■■□□□ 1.58
CTCF-203ENST00000566078 ZNF833PQ6ZTB9 187 aa24.9■■□□□ 1.58
CTCF-203ENST00000566078 BEND2Q8NDZ0 799 aa24.9■■□□□ 1.58
CTCF-203ENST00000566078 FYTTD1Q96QD9 318 aaKnown RBP24.9■■□□□ 1.58
CTCF-203ENST00000566078 PCGF1Q9BSM1 259 aa24.9■■□□□ 1.58
CTCF-203ENST00000566078 TOX4O94842 621 aa24.89■■□□□ 1.57
CTCF-203ENST00000566078 IGLV1-47P01700 117 aa24.89■■□□□ 1.57
CTCF-203ENST00000566078 SERPINE2P07093 398 aa24.89■■□□□ 1.57
CTCF-203ENST00000566078 HOXB5P09067 269 aa24.89■■□□□ 1.57
CTCF-203ENST00000566078 IL3RAP26951 378 aa24.89■■□□□ 1.57
CTCF-203ENST00000566078 DCAF12L2Q5VW00 463 aa24.89■■□□□ 1.57
CTCF-203ENST00000566078 TMEM56Q96MV1 263 aa24.89■■□□□ 1.57
CTCF-203ENST00000566078 CHIAQ9BZP6 476 aa24.89■■□□□ 1.57
CTCF-203ENST00000566078 HEXA-AS1Q9H8Q6 139 aa24.89■■□□□ 1.57
CTCF-203ENST00000566078 UNKLQ9H9P5 680 aaKnown RBP24.89■■□□□ 1.57
CTCF-203ENST00000566078 RAB18Q9NP72 206 aa24.89■■□□□ 1.57
CTCF-203ENST00000566078 TMEM56-RWDD3S4R434 201 aa24.89■■□□□ 1.57
CTCF-203ENST00000566078 FAM25EA8MYX2 175 aa24.88■■□□□ 1.57
CTCF-203ENST00000566078 MSMBP08118 114 aa24.88■■□□□ 1.57
CTCF-203ENST00000566078 MMP9P14780 707 aa24.88■■□□□ 1.57
CTCF-203ENST00000566078 H2BFSP57053 126 aa24.88■■□□□ 1.57
CTCF-203ENST00000566078 LOXL1Q08397 574 aaPredicted RBP24.88■■□□□ 1.57
CTCF-203ENST00000566078 ZNF695Q8IW36 515 aa24.88■■□□□ 1.57
CTCF-203ENST00000566078 REG4Q9BYZ8 158 aa24.88■■□□□ 1.57
CTCF-203ENST00000566078 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP24.88■■□□□ 1.579e-7■□□□□ 10.5
CTCF-203ENST00000566078 CDS2O95674 445 aa24.87■■□□□ 1.57
CTCF-203ENST00000566078 HOXB4P17483 251 aaPredicted RBP24.87■■□□□ 1.57
CTCF-203ENST00000566078 NCR3LG1Q68D85 454 aa24.87■■□□□ 1.57
CTCF-203ENST00000566078 HCP5Q6MZN7 132 aa24.87■■□□□ 1.57
CTCF-203ENST00000566078 SELENOHQ8IZQ5 122 aaKnown RBP24.87■■□□□ 1.57
CTCF-203ENST00000566078 C18orf12Q96KH6 178 aa24.87■■□□□ 1.57
CTCF-203ENST00000566078 CSMD1Q96PZ7 3565 aa24.87■■□□□ 1.57
CTCF-203ENST00000566078 PRRC2AP48634 2157 aaKnown RBP24.87■■□□□ 1.57
CTCF-203ENST00000566078 B4DSR2 109 aa24.86■■□□□ 1.57
CTCF-203ENST00000566078 HLA-GP17693 338 aa24.86■■□□□ 1.57
CTCF-203ENST00000566078 SPAG16Q8N0X2 631 aa24.86■■□□□ 1.57
CTCF-203ENST00000566078 SLC35G3Q8N808 338 aa24.86■■□□□ 1.57
CTCF-203ENST00000566078 OR11H6Q8NGC7 330 aa24.86■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms