RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 LIAT1Q6ZQX7 453 aa7.29□□□□□ -1.24
VPS35-206ENST00000565228 FAM71E2Q8N5Q1 922 aa7.29□□□□□ -1.24
VPS35-206ENST00000565228 KLHDC1Q8N7A1 406 aa7.29□□□□□ -1.24
VPS35-206ENST00000565228 C11orf44Q8N8P7 122 aa7.29□□□□□ -1.24
VPS35-206ENST00000565228 OR5AN1Q8NGI8 311 aa7.29□□□□□ -1.24
VPS35-206ENST00000565228 GPX8Q8TED1 209 aa7.29□□□□□ -1.24
VPS35-206ENST00000565228 RAB2BQ8WUD1 216 aa7.29□□□□□ -1.24
VPS35-206ENST00000565228 DDB2Q92466 427 aa7.29□□□□□ -1.24
VPS35-206ENST00000565228 NXF2Q9GZY0 626 aaKnown RBP7.29□□□□□ -1.24
VPS35-206ENST00000565228 RANBP3Q9H6Z4 567 aaPredicted RBP7.29□□□□□ -1.24
VPS35-206ENST00000565228 BEX1Q9HBH7 125 aa7.29□□□□□ -1.24
VPS35-206ENST00000565228 ZNF107Q9UII5 783 aaPredicted RBP7.29□□□□□ -1.24
VPS35-206ENST00000565228 LINC00527Q9UJ94 153 aa7.29□□□□□ -1.24
VPS35-206ENST00000565228 SRRM4A7MD48 611 aaKnown RBP7.28□□□□□ -1.24
VPS35-206ENST00000565228 FCN1O00602 326 aa7.28□□□□□ -1.24
VPS35-206ENST00000565228 RAB29O14966 203 aa7.28□□□□□ -1.24
VPS35-206ENST00000565228 IGLV2-23P01705 113 aa7.28□□□□□ -1.24
VPS35-206ENST00000565228 CD28P10747 220 aa7.28□□□□□ -1.24
VPS35-206ENST00000565228 AADACP22760 399 aa7.28□□□□□ -1.24
VPS35-206ENST00000565228 TALDO1P37837 337 aa7.28□□□□□ -1.24
VPS35-206ENST00000565228 MNDAP41218 407 aa7.28□□□□□ -1.24
VPS35-206ENST00000565228 NDPQ00604 133 aa7.28□□□□□ -1.24
VPS35-206ENST00000565228 HES1Q14469 280 aa7.28□□□□□ -1.24
VPS35-206ENST00000565228 KIR2DS1Q14954 304 aa7.28□□□□□ -1.24
VPS35-206ENST00000565228 TMEM69Q5SWH9 247 aa7.28□□□□□ -1.24
VPS35-206ENST00000565228 CCDC144NLQ6NUI1 221 aa7.28□□□□□ -1.24
VPS35-206ENST00000565228 CNIH2Q6PI25 160 aa7.28□□□□□ -1.24
VPS35-206ENST00000565228 SNX29P2Q8IUI4 249 aa7.28□□□□□ -1.24
VPS35-206ENST00000565228 C3orf56Q8N813 242 aa7.28□□□□□ -1.24
VPS35-206ENST00000565228 BEST4Q8NFU0 473 aa7.28□□□□□ -1.24
VPS35-206ENST00000565228 OR10J5Q8NHC4 309 aa7.28□□□□□ -1.24
VPS35-206ENST00000565228 S100A16Q96FQ6 103 aaKnown RBP7.28□□□□□ -1.24
VPS35-206ENST00000565228 CMTM3Q96MX0 182 aa7.28□□□□□ -1.24
VPS35-206ENST00000565228 NOL4LQ96MY1 436 aaPredicted RBP7.28□□□□□ -1.24
VPS35-206ENST00000565228 S1PR3Q99500 378 aa7.28□□□□□ -1.24
VPS35-206ENST00000565228 SOSTQ9BQB4 213 aa7.28□□□□□ -1.24
VPS35-206ENST00000565228 NPFFR1Q9GZQ6 430 aa7.28□□□□□ -1.24
VPS35-206ENST00000565228 OR2D2Q9H210 308 aa7.28□□□□□ -1.24
VPS35-206ENST00000565228 DIABLOQ9NR28 239 aa7.28□□□□□ -1.24
VPS35-206ENST00000565228 TPSG1Q9NRR2 321 aa7.28□□□□□ -1.24
VPS35-206ENST00000565228 SCOCQ9UIL1 159 aa7.28□□□□□ -1.24
VPS35-206ENST00000565228 MGAT4AQ9UM21 535 aa7.28□□□□□ -1.24
VPS35-206ENST00000565228 GAB2Q9UQC2 676 aa7.28□□□□□ -1.24
VPS35-206ENST00000565228 MOB4Q9Y3A3 225 aa7.28□□□□□ -1.24
VPS35-206ENST00000565228 FBXO7Q9Y3I1 522 aa7.28□□□□□ -1.24
VPS35-206ENST00000565228 TET2Q6N021 2002 aaPredicted RBP7.27□□□□□ -1.25
VPS35-206ENST00000565228 DPPA5A6NC42 116 aa7.27□□□□□ -1.25
VPS35-206ENST00000565228 M0R1X1 148 aa7.27□□□□□ -1.25
VPS35-206ENST00000565228 HSPA12AO43301 675 aa7.27□□□□□ -1.25
VPS35-206ENST00000565228 SCGNO76038 276 aa7.27□□□□□ -1.25
VPS35-206ENST00000565228 RGS11O94810 467 aa7.27□□□□□ -1.25
VPS35-206ENST00000565228 DIRAS3O95661 229 aa7.27□□□□□ -1.25
VPS35-206ENST00000565228 MOSP00540 346 aa7.27□□□□□ -1.25
VPS35-206ENST00000565228 PMP2P02689 132 aa7.27□□□□□ -1.25
VPS35-206ENST00000565228 FAM106CPP0CH98 169 aa7.27□□□□□ -1.25
VPS35-206ENST00000565228 EGR2P11161 476 aaPredicted RBP7.27□□□□□ -1.25
VPS35-206ENST00000565228 IL3RAP26951 378 aa7.27□□□□□ -1.25
VPS35-206ENST00000565228 RANBP1P43487 201 aa7.27□□□□□ -1.25
VPS35-206ENST00000565228 RFX2P48378 723 aa7.27□□□□□ -1.25
VPS35-206ENST00000565228 ACTBP60709 375 aa7.27□□□□□ -1.25
VPS35-206ENST00000565228 DGCR2P98153 550 aa7.27□□□□□ -1.25
VPS35-206ENST00000565228 FAM71F2Q6NXP2 309 aa7.27□□□□□ -1.25
VPS35-206ENST00000565228 C18orf65Q6ZTR6 163 aa7.27□□□□□ -1.25
VPS35-206ENST00000565228 C16orf82Q7Z2V1 217 aa7.27□□□□□ -1.25
VPS35-206ENST00000565228 OR4C13Q8NGP0 309 aa7.27□□□□□ -1.25
VPS35-206ENST00000565228 OR2T10Q8NGZ9 312 aa7.27□□□□□ -1.25
VPS35-206ENST00000565228 OR52I2Q8NH67 350 aa7.27□□□□□ -1.25
VPS35-206ENST00000565228 ACOT12Q8WYK0 555 aa7.27□□□□□ -1.25
VPS35-206ENST00000565228 BCL7BQ9BQE9 202 aa7.27□□□□□ -1.25
VPS35-206ENST00000565228 RAB9BQ9NP90 201 aa7.27□□□□□ -1.25
VPS35-206ENST00000565228 CCL28Q9NRJ3 127 aa7.27□□□□□ -1.25
VPS35-206ENST00000565228 CCDC59Q9P031 241 aaKnown RBP7.27□□□□□ -1.25
VPS35-206ENST00000565228 PIPOXQ9P0Z9 390 aa7.27□□□□□ -1.25
VPS35-206ENST00000565228 EXTL2Q9UBQ6 330 aa7.27□□□□□ -1.25
VPS35-206ENST00000565228 KLK11Q9UBX7 282 aa7.27□□□□□ -1.25
VPS35-206ENST00000565228 PITPNC1Q9UKF7 332 aa7.27□□□□□ -1.25
VPS35-206ENST00000565228 MRPS7Q9Y2R9 242 aaKnown RBP7.27□□□□□ -1.25
VPS35-206ENST00000565228 RYR3Q15413 4870 aa7.27□□□□□ -1.25
VPS35-206ENST00000565228 MGAM2Q2M2H8 2515 aa7.26□□□□□ -1.25
VPS35-206ENST00000565228 NDUFA3O95167 84 aa7.26□□□□□ -1.25
VPS35-206ENST00000565228 TSPAN15O95858 294 aa7.26□□□□□ -1.25
VPS35-206ENST00000565228 IGHG2P01859 326 aa7.26□□□□□ -1.25
VPS35-206ENST00000565228 CRYGBP07316 175 aa7.26□□□□□ -1.25
VPS35-206ENST00000565228 VSIG10L2P0DP72 767 aa7.26□□□□□ -1.25
VPS35-206ENST00000565228 HLA-DMAP28067 261 aa7.26□□□□□ -1.25
VPS35-206ENST00000565228 FCGR2CP31995 323 aa7.26□□□□□ -1.25
VPS35-206ENST00000565228 DUTP33316 252 aaKnown RBP7.26□□□□□ -1.25
VPS35-206ENST00000565228 GPR12P47775 334 aa7.26□□□□□ -1.25
VPS35-206ENST00000565228 MRPS15P82914 257 aaKnown RBP7.26□□□□□ -1.25
VPS35-206ENST00000565228 PITPNAQ00169 270 aa7.26□□□□□ -1.25
VPS35-206ENST00000565228 ARL6IP1Q15041 203 aa7.26□□□□□ -1.25
VPS35-206ENST00000565228 LCNL1Q6ZST4 164 aa7.26□□□□□ -1.25
VPS35-206ENST00000565228 OVCH2Q7RTZ1 564 aa7.26□□□□□ -1.25
VPS35-206ENST00000565228 NPBQ8NG41 125 aa7.26□□□□□ -1.25
VPS35-206ENST00000565228 OR4D10Q8NGI6 311 aa7.26□□□□□ -1.25
VPS35-206ENST00000565228 EDARADDQ8WWZ3 215 aa7.26□□□□□ -1.25
VPS35-206ENST00000565228 MRGPRFQ96AM1 343 aa7.26□□□□□ -1.25
VPS35-206ENST00000565228 DCUN1D5Q9BTE7 237 aa7.26□□□□□ -1.25
VPS35-206ENST00000565228 PRSS22Q9GZN4 317 aa7.26□□□□□ -1.25
VPS35-206ENST00000565228 FXYD6Q9H0Q3 95 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms