RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 PTX4Q96A99 478 aa13.19□□□□□ -0.3
CLK3-210ENST00000563112 DUX3Q96PT4 197 aa13.19□□□□□ -0.3
CLK3-210ENST00000563112 RNF5Q99942 180 aa13.19□□□□□ -0.3
CLK3-210ENST00000563112 RNF150Q9ULK6 438 aa13.19□□□□□ -0.3
CLK3-210ENST00000563112 TRAV41A0A0B4J266 112 aa13.18□□□□□ -0.3
CLK3-210ENST00000563112 H0YJW9 148 aa13.18□□□□□ -0.3
CLK3-210ENST00000563112 RRHO14718 337 aa13.18□□□□□ -0.3
CLK3-210ENST00000563112 PSMB8P28062 276 aa13.18□□□□□ -0.3
CLK3-210ENST00000563112 PSMB9P28065 219 aa13.18□□□□□ -0.3
CLK3-210ENST00000563112 HOXD3P31249 432 aaPredicted RBP13.18□□□□□ -0.3
CLK3-210ENST00000563112 PLA2G7Q13093 441 aa13.18□□□□□ -0.3
CLK3-210ENST00000563112 UBE2UQ5VVX9 321 aa13.18□□□□□ -0.3
CLK3-210ENST00000563112 ZNF660Q6AZW8 331 aaPredicted RBP13.18□□□□□ -0.3
CLK3-210ENST00000563112 OR5AN1Q8NGI8 311 aa13.18□□□□□ -0.3
CLK3-210ENST00000563112 FCGR1BQ92637 280 aa13.18□□□□□ -0.3
CLK3-210ENST00000563112 RDH8Q9NYR8 311 aa13.18□□□□□ -0.3
CLK3-210ENST00000563112 A0A075B6Q4 140 aa13.17□□□□□ -0.3
CLK3-210ENST00000563112 SHISA3A0PJX4 238 aa13.17□□□□□ -0.3
CLK3-210ENST00000563112 G3V318 75 aa13.17□□□□□ -0.3
CLK3-210ENST00000563112 FABP7O15540 132 aa13.17□□□□□ -0.3
CLK3-210ENST00000563112 TALDO1P37837 337 aa13.17□□□□□ -0.3
CLK3-210ENST00000563112 KRTAP10-11P60412 298 aa13.17□□□□□ -0.3
CLK3-210ENST00000563112 EGFEM1PQ0D2K5 195 aa13.17□□□□□ -0.3
CLK3-210ENST00000563112 ARFRP1Q13795 201 aa13.17□□□□□ -0.3
CLK3-210ENST00000563112 ARL6IP1Q15041 203 aa13.17□□□□□ -0.3
CLK3-210ENST00000563112 DEFB136Q30KP8 78 aa13.17□□□□□ -0.3
CLK3-210ENST00000563112 MOGAT2Q3SYC2 334 aa13.17□□□□□ -0.3
CLK3-210ENST00000563112 DEFB121Q5J5C9 76 aa13.17□□□□□ -0.3
CLK3-210ENST00000563112 SPARTQ8N0X7 666 aa13.17□□□□□ -0.3
CLK3-210ENST00000563112 OR5M8Q8NGP6 311 aa13.17□□□□□ -0.3
CLK3-210ENST00000563112 C4orf3Q8WVX3 66 aa13.17□□□□□ -0.3
CLK3-210ENST00000563112 CENPOQ9BU64 300 aa13.17□□□□□ -0.3
CLK3-210ENST00000563112 FBXL15Q9H469 300 aa13.17□□□□□ -0.3
CLK3-210ENST00000563112 IGKV1-6A0A0C4DH72 117 aa13.16□□□□□ -0.3
CLK3-210ENST00000563112 RAB27BO00194 218 aa13.16□□□□□ -0.3
CLK3-210ENST00000563112 BET1O15155 118 aa13.16□□□□□ -0.3
CLK3-210ENST00000563112 APOA2P02652 100 aa13.16□□□□□ -0.3
CLK3-210ENST00000563112 TFAP2AP05549 437 aa13.16□□□□□ -0.3
CLK3-210ENST00000563112 FCGR3AP08637 254 aa13.16□□□□□ -0.3
CLK3-210ENST00000563112 HIST1H1DP16402 221 aaKnown RBP13.16□□□□□ -0.3
CLK3-210ENST00000563112 GNB3P16520 340 aa13.16□□□□□ -0.3
CLK3-210ENST00000563112 PPIFP30405 207 aaKnown RBP13.16□□□□□ -0.3
CLK3-210ENST00000563112 TMEM267Q0VDI3 215 aaPredicted RBP13.16□□□□□ -0.3
CLK3-210ENST00000563112 DRAXINQ8NBI3 349 aaPredicted RBP13.16□□□□□ -0.3
CLK3-210ENST00000563112 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.16□□□□□ -0.3
CLK3-210ENST00000563112 OR10J5Q8NHC4 309 aa13.16□□□□□ -0.3
CLK3-210ENST00000563112 ABHD5Q8WTS1 349 aa13.16□□□□□ -0.3
CLK3-210ENST00000563112 UBE2E2Q96LR5 201 aa13.16□□□□□ -0.3
CLK3-210ENST00000563112 TSNAXQ99598 290 aaKnown RBP13.16□□□□□ -0.3
CLK3-210ENST00000563112 TOLLIPQ9H0E2 274 aa13.16□□□□□ -0.3
CLK3-210ENST00000563112 ATG5Q9H1Y0 275 aa13.16□□□□□ -0.3
CLK3-210ENST00000563112 STUB1Q9UNE7 303 aa13.16□□□□□ -0.3
CLK3-210ENST00000563112 SSR3Q9UNL2 185 aa13.16□□□□□ -0.3
CLK3-210ENST00000563112 VSIG4Q9Y279 399 aa13.16□□□□□ -0.3
CLK3-210ENST00000563112 KCNK7Q9Y2U2 307 aa13.16□□□□□ -0.3
CLK3-210ENST00000563112 K7EIL1 84 aa13.15□□□□□ -0.3
CLK3-210ENST00000563112 DIRAS3O95661 229 aa13.15□□□□□ -0.3
CLK3-210ENST00000563112 IGLV1-40P01703 118 aa13.15□□□□□ -0.3
CLK3-210ENST00000563112 FGF9P31371 208 aaPredicted RBP13.15□□□□□ -0.3
CLK3-210ENST00000563112 RPS16P62249 146 aaKnown RBP13.15□□□□□ -0.3
CLK3-210ENST00000563112 CX3CL1P78423 397 aa13.15□□□□□ -0.3
CLK3-210ENST00000563112 ECSCRQ19T08 205 aa13.15□□□□□ -0.3
CLK3-210ENST00000563112 TPRA1Q86W33 373 aa13.15□□□□□ -0.3
CLK3-210ENST00000563112 TCTEX1D1Q8N7M0 179 aa13.15□□□□□ -0.3
CLK3-210ENST00000563112 TXNL4BQ9NX01 149 aaKnown RBP13.15□□□□□ -0.3
CLK3-210ENST00000563112 A0A0B4J203 849 aa13.14□□□□□ -0.31
CLK3-210ENST00000563112 NOTOA8MTQ0 251 aa13.14□□□□□ -0.31
CLK3-210ENST00000563112 M0R1X1 148 aa13.14□□□□□ -0.31
CLK3-210ENST00000563112 MFNGO00587 321 aa13.14□□□□□ -0.31
CLK3-210ENST00000563112 PROP1O75360 226 aa13.14□□□□□ -0.31
CLK3-210ENST00000563112 GSTT2P0CG29 244 aa13.14□□□□□ -0.31
CLK3-210ENST00000563112 GSTT2BP0CG30 244 aa13.14□□□□□ -0.31
CLK3-210ENST00000563112 RAB9AP51151 201 aa13.14□□□□□ -0.31
CLK3-210ENST00000563112 IGSF11Q5DX21 431 aa13.14□□□□□ -0.31
CLK3-210ENST00000563112 PDPNQ86YL7 162 aa13.14□□□□□ -0.31
CLK3-210ENST00000563112 ZNF491Q8N8L2 437 aa13.14□□□□□ -0.31
CLK3-210ENST00000563112 MINDY2Q8NBR6 621 aa13.14□□□□□ -0.31
CLK3-210ENST00000563112 OR11H1Q8NG94 326 aa13.14□□□□□ -0.31
CLK3-210ENST00000563112 MYOZ3Q8TDC0 251 aa13.14□□□□□ -0.31
CLK3-210ENST00000563112 GINS4Q9BRT9 223 aa13.14□□□□□ -0.31
CLK3-210ENST00000563112 CABLES2Q9BTV7 478 aa13.14□□□□□ -0.31
CLK3-210ENST00000563112 KLK15Q9H2R5 256 aa13.14□□□□□ -0.31
CLK3-210ENST00000563112 METTL1Q9UBP6 276 aaKnown RBP13.14□□□□□ -0.31
CLK3-210ENST00000563112 RBM7Q9Y580 266 aaKnown RBP13.14□□□□□ -0.31
CLK3-210ENST00000563112 TRBV6-7A0A0A0MS04 114 aa13.13□□□□□ -0.31
CLK3-210ENST00000563112 A0A1W2PN81 502 aa13.13□□□□□ -0.31
CLK3-210ENST00000563112 WI2-2373I1.2A0A1W2PRP0 233 aa13.13□□□□□ -0.31
CLK3-210ENST00000563112 SPDEFO95238 335 aa13.13□□□□□ -0.31
CLK3-210ENST00000563112 OR8U9P0C7N5 309 aa13.13□□□□□ -0.31
CLK3-210ENST00000563112 CHRNA7P36544 502 aa13.13□□□□□ -0.31
CLK3-210ENST00000563112 CRIP2P52943 208 aaPredicted RBP13.13□□□□□ -0.31
CLK3-210ENST00000563112 DGCR2P98153 550 aa13.13□□□□□ -0.31
CLK3-210ENST00000563112 CBX3Q13185 183 aa13.13□□□□□ -0.31
CLK3-210ENST00000563112 PSG5Q15238 335 aa13.13□□□□□ -0.31
CLK3-210ENST00000563112 SRSF7Q16629 238 aaKnown RBP eCLIP13.13□□□□□ -0.31
CLK3-210ENST00000563112 C9orf66Q5T8R8 295 aa13.13□□□□□ -0.31
CLK3-210ENST00000563112 ZNF383Q8NA42 475 aa13.13□□□□□ -0.31
CLK3-210ENST00000563112 OR1N2Q8NGR9 330 aa13.13□□□□□ -0.31
CLK3-210ENST00000563112 FLYWCH2Q96CP2 140 aaKnown RBP13.13□□□□□ -0.31
CLK3-210ENST00000563112 CLCC1Q96S66 551 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms