RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 SURF2Q15527 256 aaPredicted RBP13.41□□□□□ -0.26
VPS4A-202ENST00000562754 MSMO1Q15800 293 aa13.41□□□□□ -0.26
VPS4A-202ENST00000562754 NRARPQ7Z6K4 114 aa13.41□□□□□ -0.26
VPS4A-202ENST00000562754 SLC38A6Q8IZM9 456 aa13.41□□□□□ -0.26
VPS4A-202ENST00000562754 BCL6BQ8N143 479 aaPredicted RBP13.41□□□□□ -0.26
VPS4A-202ENST00000562754 GPHA2Q96T91 129 aa13.41□□□□□ -0.26
VPS4A-202ENST00000562754 MRPL20Q9BYC9 149 aaKnown RBP13.41□□□□□ -0.26
VPS4A-202ENST00000562754 DPAGT1Q9H3H5 408 aa13.41□□□□□ -0.26
VPS4A-202ENST00000562754 GPR132Q9UNW8 380 aa13.41□□□□□ -0.26
VPS4A-202ENST00000562754 GAB2Q9UQC2 676 aa13.41□□□□□ -0.26
VPS4A-202ENST00000562754 HILPDAQ9Y5L2 63 aa13.41□□□□□ -0.26
VPS4A-202ENST00000562754 ANK3Q12955 4377 aaKnown RBP13.41□□□□□ -0.26
VPS4A-202ENST00000562754 MTORP42345 2549 aa13.4□□□□□ -0.26
VPS4A-202ENST00000562754 FAM240BA0A1B0GVZ2 78 aa13.4□□□□□ -0.26
VPS4A-202ENST00000562754 A0A1W2PPI3 338 aa13.4□□□□□ -0.26
VPS4A-202ENST00000562754 M0R1X1 148 aa13.4□□□□□ -0.26
VPS4A-202ENST00000562754 GPR31O00270 319 aa13.4□□□□□ -0.26
VPS4A-202ENST00000562754 SLC22A5O76082 557 aa13.4□□□□□ -0.26
VPS4A-202ENST00000562754 CTSDP07339 412 aaPredicted RBP13.4□□□□□ -0.26
VPS4A-202ENST00000562754 SPNP16150 400 aa13.4□□□□□ -0.26
VPS4A-202ENST00000562754 ECI1P42126 302 aa13.4□□□□□ -0.26
VPS4A-202ENST00000562754 LINC00205P59089 165 aa13.4□□□□□ -0.26
VPS4A-202ENST00000562754 ZNF816Q0VGE8 651 aaPredicted RBP13.4□□□□□ -0.26
VPS4A-202ENST00000562754 PHLDA2Q53GA4 152 aa13.4□□□□□ -0.26
VPS4A-202ENST00000562754 FAM71F2Q6NXP2 309 aa13.4□□□□□ -0.26
VPS4A-202ENST00000562754 C9orf139Q6ZV77 190 aa13.4□□□□□ -0.26
VPS4A-202ENST00000562754 TEX29Q8N6K0 151 aa13.4□□□□□ -0.26
VPS4A-202ENST00000562754 BVESQ8NE79 360 aa13.4□□□□□ -0.26
VPS4A-202ENST00000562754 RTN4IP1Q8WWV3 396 aaPredicted RBP13.4□□□□□ -0.26
VPS4A-202ENST00000562754 RPEQ96AT9 228 aa13.4□□□□□ -0.26
VPS4A-202ENST00000562754 SLC25A21Q9BQT8 299 aaPredicted RBP13.4□□□□□ -0.26
VPS4A-202ENST00000562754 RTBDNQ9BSG5 229 aaPredicted RBP13.4□□□□□ -0.26
VPS4A-202ENST00000562754 GHITMQ9H3K2 345 aa13.4□□□□□ -0.26
VPS4A-202ENST00000562754 C5orf66Q9H5L9 145 aa13.4□□□□□ -0.26
VPS4A-202ENST00000562754 FLVCR2Q9UPI3 526 aa13.4□□□□□ -0.26
VPS4A-202ENST00000562754 TNFSF12O43508 249 aa13.39□□□□□ -0.27
VPS4A-202ENST00000562754 TCRBP04435 133 aa13.39□□□□□ -0.27
VPS4A-202ENST00000562754 HNF1AP20823 631 aa13.39□□□□□ -0.27
VPS4A-202ENST00000562754 CEACAM3P40198 252 aa13.39□□□□□ -0.27
VPS4A-202ENST00000562754 BPIFB3P59826 476 aa13.39□□□□□ -0.27
VPS4A-202ENST00000562754 SSX2Q16385 188 aa13.39□□□□□ -0.27
VPS4A-202ENST00000562754 LPCAT3Q6P1A2 487 aa13.39□□□□□ -0.27
VPS4A-202ENST00000562754 TGIF2LXQ8IUE1 241 aa13.39□□□□□ -0.27
VPS4A-202ENST00000562754 ZDHHC22Q8N966 263 aa13.39□□□□□ -0.27
VPS4A-202ENST00000562754 DRAXINQ8NBI3 349 aaPredicted RBP13.39□□□□□ -0.27
VPS4A-202ENST00000562754 ENKURQ8TC29 256 aa13.39□□□□□ -0.27
VPS4A-202ENST00000562754 ZFAND1Q8TCF1 268 aa13.39□□□□□ -0.27
VPS4A-202ENST00000562754 ZFAND2BQ8WV99 257 aa13.39□□□□□ -0.27
VPS4A-202ENST00000562754 C22orf15Q8WYQ4 148 aa13.39□□□□□ -0.27
VPS4A-202ENST00000562754 AKR1E2Q96JD6 320 aa13.39□□□□□ -0.27
VPS4A-202ENST00000562754 S1PR3Q99500 378 aa13.39□□□□□ -0.27
VPS4A-202ENST00000562754 SLC2A9Q9NRM0 540 aa13.39□□□□□ -0.27
VPS4A-202ENST00000562754 NSD1Q96L73 2696 aaPredicted RBP13.38□□□□□ -0.27
VPS4A-202ENST00000562754 IGHV1-3A0A0C4DH29 117 aa13.38□□□□□ -0.27
VPS4A-202ENST00000562754 MDFIC2A0A1B0GVS7 189 aa13.38□□□□□ -0.27
VPS4A-202ENST00000562754 LINC00473A8K010 186 aa13.38□□□□□ -0.27
VPS4A-202ENST00000562754 ARPC1BO15143 372 aaKnown RBP13.38□□□□□ -0.27
VPS4A-202ENST00000562754 PTTG1O95997 202 aa13.38□□□□□ -0.27
VPS4A-202ENST00000562754 GAPDHP04406 335 aaKnown RBP13.38□□□□□ -0.27
VPS4A-202ENST00000562754 CT45A6P0DMU7 189 aa13.38□□□□□ -0.27
VPS4A-202ENST00000562754 CT45A5P0DMU8 189 aa13.38□□□□□ -0.27
VPS4A-202ENST00000562754 CT45A7P0DMV0 189 aa13.38□□□□□ -0.27
VPS4A-202ENST00000562754 DUTP33316 252 aaKnown RBP13.38□□□□□ -0.27
VPS4A-202ENST00000562754 SRP14P37108 136 aaKnown RBP13.38□□□□□ -0.27
VPS4A-202ENST00000562754 RND3P61587 244 aa13.38□□□□□ -0.27
VPS4A-202ENST00000562754 RPL30P62888 115 aaKnown RBP13.38□□□□□ -0.27
VPS4A-202ENST00000562754 GLDNQ6ZMI3 551 aaPredicted RBP13.38□□□□□ -0.27
VPS4A-202ENST00000562754 ZBTB34Q8NCN2 500 aa13.38□□□□□ -0.27
VPS4A-202ENST00000562754 ADAD2Q8NCV1 583 aaKnown RBP13.38□□□□□ -0.27
VPS4A-202ENST00000562754 TMEM230Q96A57 120 aa13.38□□□□□ -0.27
VPS4A-202ENST00000562754 RBMXL1Q96E39 390 aaKnown RBP13.38□□□□□ -0.27
VPS4A-202ENST00000562754 MALSU1Q96EH3 234 aa13.38□□□□□ -0.27
VPS4A-202ENST00000562754 ZNF486Q96H40 463 aaPredicted RBP13.38□□□□□ -0.27
VPS4A-202ENST00000562754 NABP2Q9BQ15 211 aa13.38□□□□□ -0.27
VPS4A-202ENST00000562754 MS4A7Q9GZW8 240 aaPredicted RBP13.38□□□□□ -0.27
VPS4A-202ENST00000562754 C20orf85Q9H1P6 137 aa13.38□□□□□ -0.27
VPS4A-202ENST00000562754 C14orf166Q9Y224 244 aaKnown RBP13.38□□□□□ -0.27
VPS4A-202ENST00000562754 FN1P02751 2386 aaKnown RBP13.38□□□□□ -0.27
VPS4A-202ENST00000562754 OOSP1A8MZH6 123 aa13.37□□□□□ -0.27
VPS4A-202ENST00000562754 INAFM1C9JVW0 142 aa13.37□□□□□ -0.27
VPS4A-202ENST00000562754 PGLYRP1O75594 196 aaPredicted RBP13.37□□□□□ -0.27
VPS4A-202ENST00000562754 RLN1P04808 185 aa13.37□□□□□ -0.27
VPS4A-202ENST00000562754 PIGPP57054 158 aa13.37□□□□□ -0.27
VPS4A-202ENST00000562754 DEFB112Q30KQ8 113 aa13.37□□□□□ -0.27
VPS4A-202ENST00000562754 ABCA11PQ4W5N1 156 aa13.37□□□□□ -0.27
VPS4A-202ENST00000562754 OR8H3Q8N146 312 aa13.37□□□□□ -0.27
VPS4A-202ENST00000562754 ZNF383Q8NA42 475 aa13.37□□□□□ -0.27
VPS4A-202ENST00000562754 DUSP18Q8NEJ0 188 aa13.37□□□□□ -0.27
VPS4A-202ENST00000562754 CFHR4Q92496 578 aa13.37□□□□□ -0.27
VPS4A-202ENST00000562754 SCGB3A2Q96PL1 93 aa13.37□□□□□ -0.27
VPS4A-202ENST00000562754 NUDT15Q9NV35 164 aa13.37□□□□□ -0.27
VPS4A-202ENST00000562754 COPZ2Q9P299 210 aa13.37□□□□□ -0.27
VPS4A-202ENST00000562754 TRAV6A0A075B6T7 132 aa13.36□□□□□ -0.27
VPS4A-202ENST00000562754 TIMM23O14925 209 aa13.36□□□□□ -0.27
VPS4A-202ENST00000562754 TXNL1O43396 289 aa13.36□□□□□ -0.27
VPS4A-202ENST00000562754 RGS21Q2M5E4 152 aa13.36□□□□□ -0.27
VPS4A-202ENST00000562754 TUSC1Q2TAM9 212 aa13.36□□□□□ -0.27
VPS4A-202ENST00000562754 KCTD9Q7L273 389 aa13.36□□□□□ -0.27
VPS4A-202ENST00000562754 TMED4Q7Z7H5 227 aa13.36□□□□□ -0.27
VPS4A-202ENST00000562754 TBC1D26Q86UD7 250 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms