RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 ZNF418Q8TF45 676 aaPredicted RBP7.76□□□□□ -1.17
VPS39-205ENST00000562258 Q96MF0 132 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 SERTAD4Q9NUC0 356 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 DPM3Q9P2X0 92 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 UBQLN2Q9UHD9 624 aa7.76□□□□□ -1.17
VPS39-205ENST00000562258 RCL1Q9Y2P8 373 aaKnown RBP7.76□□□□□ -1.17
VPS39-205ENST00000562258 MAP1AP78559 2803 aaPredicted RBP7.76□□□□□ -1.17
VPS39-205ENST00000562258 EYSQ5T1H1 3165 aa7.75□□□□□ -1.17
VPS39-205ENST00000562258 C9orf170A2RU37 121 aa7.75□□□□□ -1.17
VPS39-205ENST00000562258 TRIM64CA6NLI5 447 aa7.75□□□□□ -1.17
VPS39-205ENST00000562258 GOSR1O95249 250 aa7.75□□□□□ -1.17
VPS39-205ENST00000562258 FBP1P09467 338 aa7.75□□□□□ -1.17
VPS39-205ENST00000562258 EGR1P18146 543 aa7.75□□□□□ -1.17
VPS39-205ENST00000562258 HTR2BP41595 481 aa7.75□□□□□ -1.17
VPS39-205ENST00000562258 EFNB1P98172 346 aa7.75□□□□□ -1.17
VPS39-205ENST00000562258 CENPVQ7Z7K6 275 aaPredicted RBP7.75□□□□□ -1.17
VPS39-205ENST00000562258 SFT2D1Q8WV19 159 aa7.75□□□□□ -1.17
VPS39-205ENST00000562258 PITPNC1Q9UKF7 332 aa7.75□□□□□ -1.17
VPS39-205ENST00000562258 V9GYH0 126 aa7.75□□□□□ -1.17
VPS39-205ENST00000562258 FAM24AA6NFZ4 105 aa7.75□□□□□ -1.17
VPS39-205ENST00000562258 ZNF729A6NN14 1252 aaPredicted RBP7.75□□□□□ -1.17
VPS39-205ENST00000562258 PSPNO60542 156 aa7.75□□□□□ -1.17
VPS39-205ENST00000562258 IFNA1P01562 189 aa7.75□□□□□ -1.17
VPS39-205ENST00000562258 THBS3P49746 956 aa7.75□□□□□ -1.17
VPS39-205ENST00000562258 CD300CQ08708 224 aa7.75□□□□□ -1.17
VPS39-205ENST00000562258 RAB32Q13637 225 aa7.75□□□□□ -1.17
VPS39-205ENST00000562258 LYPD2Q6UXB3 125 aa7.75□□□□□ -1.17
VPS39-205ENST00000562258 Q6ZNX1 250 aa7.75□□□□□ -1.17
VPS39-205ENST00000562258 SAXO1Q8IYX7 474 aa7.75□□□□□ -1.17
VPS39-205ENST00000562258 OR2G3Q8NGZ4 309 aa7.75□□□□□ -1.17
VPS39-205ENST00000562258 ITLN2Q8WWU7 325 aaPredicted RBP7.75□□□□□ -1.17
VPS39-205ENST00000562258 CIB3Q96Q77 187 aaPredicted RBP7.75□□□□□ -1.17
VPS39-205ENST00000562258 LINC00527Q9UJ94 153 aa7.75□□□□□ -1.17
VPS39-205ENST00000562258 CFAP46Q8IYW2 2715 aa7.75□□□□□ -1.17
VPS39-205ENST00000562258 A0A1W2PN81 502 aa7.75□□□□□ -1.17
VPS39-205ENST00000562258 C17orf112F2Z3M2 114 aa7.75□□□□□ -1.17
VPS39-205ENST00000562258 J3QR06 171 aa7.75□□□□□ -1.17
VPS39-205ENST00000562258 CHRNA7P36544 502 aa7.75□□□□□ -1.17
VPS39-205ENST00000562258 UNQ5815/PRO19632Q6UWF5 114 aa7.75□□□□□ -1.17
VPS39-205ENST00000562258 S100A7AQ86SG5 101 aa7.75□□□□□ -1.17
VPS39-205ENST00000562258 NR2C2APQ86WQ0 139 aa7.75□□□□□ -1.17
VPS39-205ENST00000562258 EAF1Q96JC9 268 aaPredicted RBP7.75□□□□□ -1.17
VPS39-205ENST00000562258 IGKV1-27A0A075B6S5 117 aa7.74□□□□□ -1.17
VPS39-205ENST00000562258 UBE2L5PA0A1B0GUS4 154 aa7.74□□□□□ -1.17
VPS39-205ENST00000562258 TMEM178BH3BS89 294 aa7.74□□□□□ -1.17
VPS39-205ENST00000562258 SFT2D2O95562 160 aa7.74□□□□□ -1.17
VPS39-205ENST00000562258 CTSDP07339 412 aaPredicted RBP7.74□□□□□ -1.17
VPS39-205ENST00000562258 ATF4P18848 351 aaPredicted RBP7.74□□□□□ -1.17
VPS39-205ENST00000562258 ORM2P19652 201 aa7.74□□□□□ -1.17
VPS39-205ENST00000562258 KLRD1Q13241 179 aa7.74□□□□□ -1.17
VPS39-205ENST00000562258 ZNF266Q14584 549 aa7.74□□□□□ -1.17
VPS39-205ENST00000562258 OPCMLQ14982 345 aa7.74□□□□□ -1.17
VPS39-205ENST00000562258 ZDHHC22Q8N966 263 aa7.74□□□□□ -1.17
VPS39-205ENST00000562258 TMED6Q8WW62 240 aa7.74□□□□□ -1.17
VPS39-205ENST00000562258 ARV1Q9H2C2 271 aa7.74□□□□□ -1.17
VPS39-205ENST00000562258 TMED3Q9Y3Q3 217 aa7.74□□□□□ -1.17
VPS39-205ENST00000562258 GNG7O60262 68 aa7.74□□□□□ -1.17
VPS39-205ENST00000562258 REG1AP05451 166 aa7.74□□□□□ -1.17
VPS39-205ENST00000562258 VDAC1P21796 283 aa7.74□□□□□ -1.17
VPS39-205ENST00000562258 OXA1LQ15070 435 aa7.74□□□□□ -1.17
VPS39-205ENST00000562258 OVCH2Q7RTZ1 564 aa7.74□□□□□ -1.17
VPS39-205ENST00000562258 LILRB1Q8NHL6 650 aaPredicted RBP7.74□□□□□ -1.17
VPS39-205ENST00000562258 CMTM2Q8TAZ6 248 aa7.74□□□□□ -1.17
VPS39-205ENST00000562258 SUN5Q8TC36 379 aa7.74□□□□□ -1.17
VPS39-205ENST00000562258 PTX4Q96A99 478 aa7.74□□□□□ -1.17
VPS39-205ENST00000562258 S4R3C0 116 aa7.74□□□□□ -1.17
VPS39-205ENST00000562258 SRRM5B3KS81 715 aa7.74□□□□□ -1.17
VPS39-205ENST00000562258 TDGF1P3P51864 188 aa7.74□□□□□ -1.17
VPS39-205ENST00000562258 WDR25Q64LD2 544 aaPredicted RBP7.74□□□□□ -1.17
VPS39-205ENST00000562258 ZNF843Q8N446 348 aa7.74□□□□□ -1.17
VPS39-205ENST00000562258 NANPQ8TBE9 248 aa7.74□□□□□ -1.17
VPS39-205ENST00000562258 FBXL15Q9H469 300 aa7.74□□□□□ -1.17
VPS39-205ENST00000562258 KIAA1549LQ6ZVL6 1849 aa7.74□□□□□ -1.17
VPS39-205ENST00000562258 PLA2G10O15496 165 aa7.74□□□□□ -1.17
VPS39-205ENST00000562258 APOC3P02656 99 aa7.74□□□□□ -1.17
VPS39-205ENST00000562258 FGF2P09038 288 aa7.74□□□□□ -1.17
VPS39-205ENST00000562258 WFDC3Q8IUB2 231 aa7.74□□□□□ -1.17
VPS39-205ENST00000562258 ZNF486Q96H40 463 aaPredicted RBP7.74□□□□□ -1.17
VPS39-205ENST00000562258 NMES1Q9C002 83 aa7.74□□□□□ -1.17
VPS39-205ENST00000562258 A0A1W2PRX2 142 aa7.73□□□□□ -1.17
VPS39-205ENST00000562258 CHST1O43916 411 aa7.73□□□□□ -1.17
VPS39-205ENST00000562258 DFFBO76075 338 aa7.73□□□□□ -1.17
VPS39-205ENST00000562258 FABP1P07148 127 aa7.73□□□□□ -1.17
VPS39-205ENST00000562258 RPL27AP46776 148 aaKnown RBP7.73□□□□□ -1.17
VPS39-205ENST00000562258 GZMKP49863 264 aa7.73□□□□□ -1.17
VPS39-205ENST00000562258 TAS2R30P59541 319 aa7.73□□□□□ -1.17
VPS39-205ENST00000562258 MBNL2Q5VZF2 373 aaKnown RBP7.73□□□□□ -1.17
VPS39-205ENST00000562258 C19orf12Q9NSK7 152 aa7.73□□□□□ -1.17
VPS39-205ENST00000562258 KBTBD11-OT1A0A1B0GTJ5 212 aa7.73□□□□□ -1.17
VPS39-205ENST00000562258 ZNF785A8K8V0 405 aa7.73□□□□□ -1.17
VPS39-205ENST00000562258 E5RGE8 158 aa7.73□□□□□ -1.17
VPS39-205ENST00000562258 ICMTO60725 284 aa7.73□□□□□ -1.17
VPS39-205ENST00000562258 TSPAN9O75954 239 aa7.73□□□□□ -1.17
VPS39-205ENST00000562258 IGKV1D-33P01593 117 aa7.73□□□□□ -1.17
VPS39-205ENST00000562258 IGKV1-33P01594 117 aa7.73□□□□□ -1.17
VPS39-205ENST00000562258 SLC35E4Q6ICL7 350 aa7.73□□□□□ -1.17
VPS39-205ENST00000562258 TMEM182Q6ZP80 229 aaPredicted RBP7.73□□□□□ -1.17
VPS39-205ENST00000562258 C17orf50Q8WW18 174 aa7.73□□□□□ -1.17
VPS39-205ENST00000562258 HSF4Q9ULV5 492 aa7.73□□□□□ -1.17
VPS39-205ENST00000562258 TRAV24A0A0B4J272 114 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms