RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 ZNF818PQ6ZRF7 136 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 SLC38A6Q8IZM9 456 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 ZNF561Q8N587 486 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 RPS4Y2Q8TD47 263 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 SLC25A28Q96A46 364 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 FLYWCH2Q96CP2 140 aaKnown RBP4.53□□□□□ -1.68
VPS13C-209ENST00000560637 C20orf24Q9BUV8 137 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 FGF23Q9GZV9 251 aaPredicted RBP4.53□□□□□ -1.68
VPS13C-209ENST00000560637 TUBG2Q9NRH3 451 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 IDI2-AS1Q9NZ38 188 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 WSB1Q9Y6I7 421 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 GCN1Q92616 2671 aaKnown RBP4.53□□□□□ -1.68
VPS13C-209ENST00000560637 NCKAP5O14513 1909 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 PTPRBP23467 1997 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 USF1P22415 310 aaPredicted RBP4.53□□□□□ -1.68
VPS13C-209ENST00000560637 BRS3P32247 399 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 RAB32Q13637 225 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 VMA21Q3ZAQ7 101 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 OR4A4PQ8NGN8 299 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 CLDND2Q8NHS1 167 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 MRPL30Q8TCC3 161 aaKnown RBP4.53□□□□□ -1.68
VPS13C-209ENST00000560637 NAA60Q9H7X0 242 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 COA4Q9NYJ1 87 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 SORL1Q92673 2214 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 TNCP24821 2201 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 IGHV4-30-2A0A087WSY4 118 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 BORCS7-ASMTA0A0B4J1R7 106 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 A0A0U1RQK1 487 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 ZNF320A2RRD8 509 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 C9orf170A2RU37 121 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 CLEC18AA5D8T8 446 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 RAB29O14966 203 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 NDUFA2O43678 99 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 RP2O75695 350 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 OR13C7P0DN81 318 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 DTYMKP23919 212 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 CD200P41217 278 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 RAB7AP51149 207 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 KRTAP10-9P60411 292 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 CYCSP99999 105 aaKnown RBP4.52□□□□□ -1.69
VPS13C-209ENST00000560637 NCR3LG1Q68D85 454 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 SEZ6L2Q6UXD5 910 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 OVCH2Q7RTZ1 564 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 DRAM1Q8N682 238 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 CLEC18CQ8NCF0 446 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 NUP37Q8NFH4 326 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 ANGPTL6Q8NI99 470 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 CLEC7AQ9BXN2 247 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 FBXL15Q9H469 300 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 TAS2R3Q9NYW6 316 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 DOK5Q9P104 306 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 MAST4O15021 2626 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 ITPR3Q14573 2671 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 IGHV3OR16-13A0A075B7E8 117 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 IGHV3-74A0A0B4J1X5 117 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 A0A1W2PRX2 142 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 FAM24AA6NFZ4 105 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 ZFP92A6NM28 416 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 S1PR2O95136 353 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 RBP4P02753 201 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 ADH4P08319 380 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 OR5G3P0C626 314 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 OR8U8P0C7N1 319 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 PRB4P10163 310 aaPredicted RBP4.52□□□□□ -1.69
VPS13C-209ENST00000560637 ERP29P30040 261 aaKnown RBP4.52□□□□□ -1.69
VPS13C-209ENST00000560637 SLC6A1P30531 599 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 ODF1Q14990 250 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 ZNF596Q8TC21 504 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 RASL11BQ9BPW5 248 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 ZNF436Q9C0F3 470 aaPredicted RBP4.52□□□□□ -1.69
VPS13C-209ENST00000560637 PLEKHA3Q9HB20 300 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 RCL1Q9Y2P8 373 aaKnown RBP4.52□□□□□ -1.69
VPS13C-209ENST00000560637 IGHV4-61A0A0C4DH41 118 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 KBTBD11-OT1A0A1B0GTJ5 212 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 SIGLEC5O15389 551 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 SLC31A2O15432 143 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 TXNL1O43396 289 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 MMP23AO75900 390 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 IGKV1D-33P01593 117 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 IGKV1-33P01594 117 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 VSIG10L2P0DP72 767 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 TBPP20226 339 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 OPRK1P41145 380 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 TMEM200BQ69YZ2 307 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 PCSK4Q6UW60 755 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 ZNF295-AS1Q8N0V1 137 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 OR4S2Q8NH73 311 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 TRIM63Q969Q1 353 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 COQ2Q96H96 371 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 SDHCQ99643 169 aaPredicted RBP4.52□□□□□ -1.69
VPS13C-209ENST00000560637 MRPL20Q9BYC9 149 aaKnown RBP4.52□□□□□ -1.69
VPS13C-209ENST00000560637 PSENENQ9NZ42 101 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 PIPOXQ9P0Z9 390 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 FBXO7Q9Y3I1 522 aa4.52□□□□□ -1.69
VPS13C-209ENST00000560637 SIAH2O43255 324 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 CA11O75493 328 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 HRASP01112 189 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 IGHV3-23P01764 117 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 IGHV4-39P01824 125 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 HNF1AP20823 631 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 95.4 ms