RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	PPP1CC	P36873	323 aa	Known RBP	0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	CRAT	P43155	626 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	CA7	P43166	264 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	RBM11	P57052	281 aa	Known RBP	0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	H2BFS	P57053	126 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	TAS2R45	P59539	299 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	UBE2G2	P60604	165 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	RPS24	P62847	133 aa	Known RBP	0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	SLC35A2	P78381	396 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	HPCA	P84074	193 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	DEFA6	Q01524	100 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	TMEM267	Q0VDI3	215 aa	Predicted RBP	0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	C1D	Q13901	141 aa	Known RBP	0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	EBP	Q15125	230 aa	Known RBP	0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	ANGPT1	Q15389	498 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	HLA-DRB5	Q30154	266 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	PDPK2P	Q6A1A2	396 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	DNM1P34	Q6PK57	102 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	SCGB1D4	Q6XE38	83 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435		Q6ZRN7	208 aa	Predicted RBP	0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	CRLF3	Q8IUI8	442 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	CD302	Q8IX05	232 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	ATP6V1C2	Q8NEY4	427 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	OR2D3	Q8NGH3	330 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	OR5C1	Q8NGR4	320 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	OR10D3	Q8NH80	312 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	SMCR5	Q8TEV8	140 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	ASB13	Q8WXK3	278 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	SMIM19	Q96E16	107 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	TXNDC17	Q9BRA2	123 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	MND1	Q9BWT6	205 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	PECR	Q9BY49	303 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	EIF5A2	Q9GZV4	153 aa	Known RBP	0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	LRRC19	Q9H756	370 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	SPANXB1	Q9NS25	103 aa	Predicted RBP	0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	IMP3	Q9NV31	184 aa	Known RBP	0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	PARVA	Q9NVD7	372 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	FAM206A	Q9NX38	181 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	TAS2R9	Q9NYW1	312 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	CFAP45	Q9UL16	551 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	SNX10	Q9Y5X0	201 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	RIMS2	Q9UQ26	1411 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	DNMT1	P26358	1616 aa	Known RBP	0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	LAMB2	P55268	1798 aa		0.27	□□□□□ -2.37
SPG11-222	ENST00000560435	ATG2B	Q96BY7	2078 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	IGLV3-9	A0A075B6K5	115 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435		A0A087WUU8	490 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	TRAV8-1	A0A0A6YYK1	113 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	LINC00854	A0A1B0GVQ3	168 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	MDFIC2	A0A1B0GVS7	189 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435		A0A1B0GW54	56 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	ERICH2	A1L162	156 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	OR6C6	A6NF89	314 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	ERICH4	A6NGS2	130 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	C11orf86	A6NJI1	115 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	ZNF705F	A8MVS1	300 aa	Predicted RBP	0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	OR11H12	B2RN74	326 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435		C9JCJ5	164 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435		H3BRN7	92 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435		M0R381	172 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	UBFD1	O14562	309 aa	Known RBP	0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	MRAS	O14807	208 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	BIRC5	O15392	142 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	ZW10	O43264	779 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	GNRH2	O43555	120 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	STX10	O60499	249 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	HPGDS	O60760	199 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	NDUFB2	O95178	105 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	PSMG1	O95456	288 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	KRT75	O95678	551 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	MT-CO2	P00403	227 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	IGHV1-69	P01742	117 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	HLA-DRA	P01903	254 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	CRYBA1	P05813	215 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	OCM	P0CE72	109 aa	Predicted RBP	0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	RD3L	P0DJH9	198 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	C8orf88	P0DMB2	117 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	PRB4	P10163	310 aa	Predicted RBP	0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	CXCL3	P19876	107 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	CFL1	P23528	166 aa	Known RBP	0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	F8A1	P23610	371 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	CRHBP	P24387	322 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	ATP6V0C	P27449	155 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	DDT	P30046	118 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	ADORA1	P30542	326 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	GRPR	P30550	384 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	CASQ1	P31415	396 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	CD200	P41217	278 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	XCL1	P47992	114 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	SERPINB10	P48595	397 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	SULT1A2	P50226	295 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	ZNF140	P52738	457 aa	Predicted RBP	0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	CLDN12	P56749	244 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	TAS2R30	P59541	319 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	ACTB	P60709	375 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	FKBP1A	P62942	108 aa	Known RBP	0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	HERVK_113	P63121	156 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	DYNLL1	P63167	89 aa	Known RBP	0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	SKP1	P63208	163 aa		0.26	□□□□□ -2.37

Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms