RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 THNSL2Q86YJ6 484 aa8.12□□□□□ -1.11
USP3-216ENST00000559873 ODF3L1Q8IXM7 274 aa8.12□□□□□ -1.11
USP3-216ENST00000559873 DYNAPQ8N1N2 210 aa8.12□□□□□ -1.11
USP3-216ENST00000559873 DRAM1Q8N682 238 aa8.12□□□□□ -1.11
USP3-216ENST00000559873 ZNF645Q8N7E2 425 aa8.12□□□□□ -1.11
USP3-216ENST00000559873 ZDHHC22Q8N966 263 aa8.12□□□□□ -1.11
USP3-216ENST00000559873 GDPD1Q8N9F7 314 aa8.12□□□□□ -1.11
USP3-216ENST00000559873 OR56B4Q8NH76 319 aa8.12□□□□□ -1.11
USP3-216ENST00000559873 GIMAP1Q8WWP7 306 aa8.12□□□□□ -1.11
USP3-216ENST00000559873 DEDD2Q8WXF8 326 aa8.12□□□□□ -1.11
USP3-216ENST00000559873 AJUBAQ96IF1 538 aa8.12□□□□□ -1.11
USP3-216ENST00000559873 ADTRPQ96IZ2 230 aa8.12□□□□□ -1.11
USP3-216ENST00000559873 SOSTQ9BQB4 213 aa8.12□□□□□ -1.11
USP3-216ENST00000559873 ZNF2Q9BSG1 426 aaPredicted RBP8.12□□□□□ -1.11
USP3-216ENST00000559873 CHIAQ9BZP6 476 aa8.12□□□□□ -1.11
USP3-216ENST00000559873 PARP12Q9H0J9 701 aaKnown RBP8.12□□□□□ -1.11
USP3-216ENST00000559873 TNFRSF19Q9NS68 423 aa8.12□□□□□ -1.11
USP3-216ENST00000559873 KLK11Q9UBX7 282 aa8.12□□□□□ -1.11
USP3-216ENST00000559873 RNF150Q9ULK6 438 aa8.12□□□□□ -1.11
USP3-216ENST00000559873 GAB2Q9UQC2 676 aa8.12□□□□□ -1.11
USP3-216ENST00000559873 DISC1C4P0D8 188 aa8.11□□□□□ -1.11
USP3-216ENST00000559873 M0R1X1 148 aa8.11□□□□□ -1.11
USP3-216ENST00000559873 RAB3DO95716 219 aa8.11□□□□□ -1.11
USP3-216ENST00000559873 CD74P04233 296 aa8.11□□□□□ -1.11
USP3-216ENST00000559873 CD3DP04234 171 aa8.11□□□□□ -1.11
USP3-216ENST00000559873 SNRNP70P08621 437 aaKnown RBP8.11□□□□□ -1.11
USP3-216ENST00000559873 AKAIN1P0CW23 69 aa8.11□□□□□ -1.11
USP3-216ENST00000559873 AADACP22760 399 aa8.11□□□□□ -1.11
USP3-216ENST00000559873 CD1BP29016 333 aa8.11□□□□□ -1.11
USP3-216ENST00000559873 MC5RP33032 325 aa8.11□□□□□ -1.11
USP3-216ENST00000559873 RFX2P48378 723 aa8.11□□□□□ -1.11
USP3-216ENST00000559873 FXYD4P59646 89 aa8.11□□□□□ -1.11
USP3-216ENST00000559873 TAGLNQ01995 201 aaKnown RBP8.11□□□□□ -1.11
USP3-216ENST00000559873 LSAMPQ13449 338 aa8.11□□□□□ -1.11
USP3-216ENST00000559873 DIAPH2-AS1Q14236 149 aa8.11□□□□□ -1.11
USP3-216ENST00000559873 HABP2Q14520 560 aaPredicted RBP8.11□□□□□ -1.11
USP3-216ENST00000559873 LY6EQ16553 131 aa8.11□□□□□ -1.11
USP3-216ENST00000559873 RPL39P5Q59GN2 51 aa8.11□□□□□ -1.11
USP3-216ENST00000559873 STEAP1BQ6NZ63 245 aa8.11□□□□□ -1.11
USP3-216ENST00000559873 LPCAT3Q6P1A2 487 aa8.11□□□□□ -1.11
USP3-216ENST00000559873 C16orf87Q6PH81 154 aa8.11□□□□□ -1.11
USP3-216ENST00000559873 ZBTB34Q8NCN2 500 aa8.11□□□□□ -1.11
USP3-216ENST00000559873 OR2T10Q8NGZ9 312 aa8.11□□□□□ -1.11
USP3-216ENST00000559873 CFHR4Q92496 578 aa8.11□□□□□ -1.11
USP3-216ENST00000559873 MOB3AQ96BX8 217 aa8.11□□□□□ -1.11
USP3-216ENST00000559873 DUX5Q96PT3 197 aa8.11□□□□□ -1.11
USP3-216ENST00000559873 THAP7Q9BT49 309 aaPredicted RBP8.11□□□□□ -1.11
USP3-216ENST00000559873 MRPL20Q9BYC9 149 aaKnown RBP8.11□□□□□ -1.11
USP3-216ENST00000559873 NPFFR1Q9GZQ6 430 aa8.11□□□□□ -1.11
USP3-216ENST00000559873 SRRQ9GZT4 340 aa8.11□□□□□ -1.11
USP3-216ENST00000559873 ESM1Q9NQ30 184 aa8.11□□□□□ -1.11
USP3-216ENST00000559873 SDHAF2Q9NX18 166 aa8.11□□□□□ -1.11
USP3-216ENST00000559873 M0QZK8 103 aa8.1□□□□□ -1.11
USP3-216ENST00000559873 GPR137BO60478 399 aa8.1□□□□□ -1.11
USP3-216ENST00000559873 OR2F2O95006 317 aa8.1□□□□□ -1.11
USP3-216ENST00000559873 IGKV1D-33P01593 117 aa8.1□□□□□ -1.11
USP3-216ENST00000559873 IGKV1-33P01594 117 aa8.1□□□□□ -1.11
USP3-216ENST00000559873 AMY2AP04746 511 aa8.1□□□□□ -1.11
USP3-216ENST00000559873 TMEM11P17152 192 aa8.1□□□□□ -1.11
USP3-216ENST00000559873 PAX6P26367 422 aa8.1□□□□□ -1.11
USP3-216ENST00000559873 ECI1P42126 302 aa8.1□□□□□ -1.11
USP3-216ENST00000559873 THBS3P49746 956 aa8.1□□□□□ -1.11
USP3-216ENST00000559873 CATR1Q13166 79 aa8.1□□□□□ -1.11
USP3-216ENST00000559873 ZNF79Q15937 498 aa8.1□□□□□ -1.11
USP3-216ENST00000559873 DHRS11Q6UWP2 260 aa8.1□□□□□ -1.11
USP3-216ENST00000559873 LYSMD2Q8IV50 215 aa8.1□□□□□ -1.11
USP3-216ENST00000559873 CMTM1Q8IZ96 169 aa8.1□□□□□ -1.11
USP3-216ENST00000559873 TOMM5Q8N4H5 51 aa8.1□□□□□ -1.11
USP3-216ENST00000559873 OR8H1Q8NGG4 311 aa8.1□□□□□ -1.11
USP3-216ENST00000559873 OR4C13Q8NGP0 309 aa8.1□□□□□ -1.11
USP3-216ENST00000559873 SECTM1Q8WVN6 248 aa8.1□□□□□ -1.11
USP3-216ENST00000559873 TMEM158Q8WZ71 300 aa8.1□□□□□ -1.11
USP3-216ENST00000559873 HSD17B10Q99714 261 aaKnown RBP8.1□□□□□ -1.11
USP3-216ENST00000559873 PRRT1Q99946 306 aa8.1□□□□□ -1.11
USP3-216ENST00000559873 NABP2Q9BQ15 211 aa8.1□□□□□ -1.11
USP3-216ENST00000559873 WDR12Q9GZL7 423 aaKnown RBP8.1□□□□□ -1.11
USP3-216ENST00000559873 SLC5A7Q9GZV3 580 aa8.1□□□□□ -1.11
USP3-216ENST00000559873 RANBP3Q9H6Z4 567 aaPredicted RBP8.1□□□□□ -1.11
USP3-216ENST00000559873 C1RLQ9NZP8 487 aa8.1□□□□□ -1.11
USP3-216ENST00000559873 MOB4Q9Y3A3 225 aa8.1□□□□□ -1.11
USP3-216ENST00000559873 PRELID3BQ9Y3B1 194 aa8.1□□□□□ -1.11
USP3-216ENST00000559873 WASHC3Q9Y3C0 194 aa8.1□□□□□ -1.11
USP3-216ENST00000559873 ANKRD20A5PA0PJZ0 165 aa8.09□□□□□ -1.11
USP3-216ENST00000559873 A6NDX4 124 aa8.09□□□□□ -1.11
USP3-216ENST00000559873 FAM90A9PA6NNJ1 464 aa8.09□□□□□ -1.11
USP3-216ENST00000559873 RNF212BA8MTL3 300 aa8.09□□□□□ -1.11
USP3-216ENST00000559873 H7C2Y5 167 aa8.09□□□□□ -1.11
USP3-216ENST00000559873 J3QRK9 145 aa8.09□□□□□ -1.11
USP3-216ENST00000559873 M0QYG6 137 aa8.09□□□□□ -1.11
USP3-216ENST00000559873 MOSP00540 346 aa8.09□□□□□ -1.11
USP3-216ENST00000559873 RRASP10301 218 aa8.09□□□□□ -1.11
USP3-216ENST00000559873 RTL8BQ17RB0 113 aa8.09□□□□□ -1.11
USP3-216ENST00000559873 ZNF57Q68EA5 555 aaPredicted RBP8.09□□□□□ -1.11
USP3-216ENST00000559873 ZNF66Q6ZN08 573 aa8.09□□□□□ -1.11
USP3-216ENST00000559873 KCTD9Q7L273 389 aa8.09□□□□□ -1.11
USP3-216ENST00000559873 PRIMA1Q86XR5 153 aa8.09□□□□□ -1.11
USP3-216ENST00000559873 PDPNQ86YL7 162 aa8.09□□□□□ -1.11
USP3-216ENST00000559873 SLC38A6Q8IZM9 456 aa8.09□□□□□ -1.11
USP3-216ENST00000559873 TRIM63Q969Q1 353 aa8.09□□□□□ -1.11
USP3-216ENST00000559873 ZNF251Q9BRH9 671 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms