RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	CLDN14	O95500	239 aa		13.7	□□□□□ -0.22
SHMT2-231	ENST00000557433	MDK	P21741	143 aa	Predicted RBP	13.7	□□□□□ -0.22
SHMT2-231	ENST00000557433	SPCS3	P61009	180 aa		13.7	□□□□□ -0.22
SHMT2-231	ENST00000557433	SRY	Q05066	204 aa		13.7	□□□□□ -0.22
SHMT2-231	ENST00000557433	EIF4EBP1	Q13541	118 aa	Predicted RBP	13.7	□□□□□ -0.22
SHMT2-231	ENST00000557433	NECAP1	Q8NC96	275 aa		13.7	□□□□□ -0.22
SHMT2-231	ENST00000557433	GALM	Q96C23	342 aa		13.7	□□□□□ -0.22
SHMT2-231	ENST00000557433	LURAP1	Q96LR2	239 aa		13.7	□□□□□ -0.22
SHMT2-231	ENST00000557433	TAAR6	Q96RI8	345 aa		13.7	□□□□□ -0.22
SHMT2-231	ENST00000557433	ZPBP	Q9BS86	351 aa		13.7	□□□□□ -0.22
SHMT2-231	ENST00000557433	NPCDR1	Q9BY65	106 aa		13.7	□□□□□ -0.22
SHMT2-231	ENST00000557433	CNN1	P51911	297 aa	Known RBP	13.7	□□□□□ -0.22
SHMT2-231	ENST00000557433	IGFBP7	Q16270	282 aa		13.7	□□□□□ -0.22
SHMT2-231	ENST00000557433	GABRA6	Q16445	453 aa		13.7	□□□□□ -0.22
SHMT2-231	ENST00000557433	C6orf15	Q6UXA7	325 aa	Predicted RBP	13.7	□□□□□ -0.22
SHMT2-231	ENST00000557433	MCEMP1	Q8IX19	187 aa		13.7	□□□□□ -0.22
SHMT2-231	ENST00000557433	PRR18	Q8N4B5	295 aa		13.7	□□□□□ -0.22
SHMT2-231	ENST00000557433	DTD1	Q8TEA8	209 aa		13.7	□□□□□ -0.22
SHMT2-231	ENST00000557433	GP6	Q9HCN6	339 aa		13.7	□□□□□ -0.22
SHMT2-231	ENST00000557433	FSCN3	Q9NQT6	498 aa		13.7	□□□□□ -0.22
SHMT2-231	ENST00000557433	ABI3	Q9P2A4	366 aa		13.7	□□□□□ -0.22
SHMT2-231	ENST00000557433	SIT1	Q9Y3P8	196 aa		13.7	□□□□□ -0.22
SHMT2-231	ENST00000557433	SDK2	Q58EX2	2172 aa		13.69	□□□□□ -0.22
SHMT2-231	ENST00000557433	TMEM210	A6NLX4	147 aa		13.69	□□□□□ -0.22
SHMT2-231	ENST00000557433	LILRA1	O75019	489 aa		13.69	□□□□□ -0.22
SHMT2-231	ENST00000557433	FOXG1	P55316	489 aa	Predicted RBP	13.69	□□□□□ -0.22
SHMT2-231	ENST00000557433	MRPL49	Q13405	166 aa	Known RBP	13.69	□□□□□ -0.22
SHMT2-231	ENST00000557433	P2RY6	Q15077	328 aa		13.69	□□□□□ -0.22
SHMT2-231	ENST00000557433	NUFIP2	Q7Z417	695 aa	Known RBP	13.69	□□□□□ -0.22
SHMT2-231	ENST00000557433	KCNIP2	Q9NS61	270 aa		13.69	□□□□□ -0.22
SHMT2-231	ENST00000557433	FUT9	Q9Y231	359 aa		13.69	□□□□□ -0.22
SHMT2-231	ENST00000557433	ODAM	A1E959	279 aa		13.68	□□□□□ -0.22
SHMT2-231	ENST00000557433	C11orf94	C9JXX5	98 aa		13.68	□□□□□ -0.22
SHMT2-231	ENST00000557433	PAGE4	O60829	102 aa		13.68	□□□□□ -0.22
SHMT2-231	ENST00000557433	CER1	O95813	267 aa		13.68	□□□□□ -0.22
SHMT2-231	ENST00000557433	RNF224	P0DH78	156 aa		13.68	□□□□□ -0.22
SHMT2-231	ENST00000557433	CDC34	P49427	236 aa	Predicted RBP	13.68	□□□□□ -0.22
SHMT2-231	ENST00000557433	FOXL1	Q12952	345 aa		13.68	□□□□□ -0.22
SHMT2-231	ENST00000557433	UNQ6494/PRO21346	Q6UXR6	183 aa		13.68	□□□□□ -0.22
SHMT2-231	ENST00000557433	GBGT1	Q8N5D6	347 aa		13.68	□□□□□ -0.22
SHMT2-231	ENST00000557433	SCCPDH	Q8NBX0	429 aa		13.68	□□□□□ -0.22
SHMT2-231	ENST00000557433	DDA1	Q9BW61	102 aa		13.68	□□□□□ -0.22
SHMT2-231	ENST00000557433	OOEP	A6NGQ2	149 aa		13.68	□□□□□ -0.22
SHMT2-231	ENST00000557433	MPDU1	O75352	247 aa		13.68	□□□□□ -0.22
SHMT2-231	ENST00000557433	NXPH2	O95156	264 aa		13.68	□□□□□ -0.22
SHMT2-231	ENST00000557433	CFI	P05156	583 aa		13.68	□□□□□ -0.22
SHMT2-231	ENST00000557433	PPP1CB	P62140	327 aa		13.68	□□□□□ -0.22
SHMT2-231	ENST00000557433	TBC1D28	Q2M2D7	210 aa		13.68	□□□□□ -0.22
SHMT2-231	ENST00000557433	PEAR1	Q5VY43	1037 aa	Predicted RBP	13.68	□□□□□ -0.22
SHMT2-231	ENST00000557433	SLC35E4	Q6ICL7	350 aa		13.68	□□□□□ -0.22
SHMT2-231	ENST00000557433	CT55	Q8WUE5	264 aa		13.68	□□□□□ -0.22
SHMT2-231	ENST00000557433	BCL2L2	Q92843	193 aa	Predicted RBP	13.68	□□□□□ -0.22
SHMT2-231	ENST00000557433	ELOVL1	Q9BW60	279 aa		13.68	□□□□□ -0.22
SHMT2-231	ENST00000557433	PI4KA	P42356	2102 aa		13.67	□□□□□ -0.22
SHMT2-231	ENST00000557433	ZNF891	A8MT65	544 aa	Predicted RBP	13.67	□□□□□ -0.22
SHMT2-231	ENST00000557433	ZNF705G	A8MUZ8	300 aa	Predicted RBP	13.67	□□□□□ -0.22
SHMT2-231	ENST00000557433	NEURL1	O76050	574 aa		13.67	□□□□□ -0.22
SHMT2-231	ENST00000557433	KRAS	P01116	189 aa		13.67	□□□□□ -0.22
SHMT2-231	ENST00000557433	SELE	P16581	610 aa		13.67	□□□□□ -0.22
SHMT2-231	ENST00000557433	NDUFB7	P17568	137 aa		13.67	□□□□□ -0.22
SHMT2-231	ENST00000557433	ABHD17B	Q5VST6	288 aa		13.67	□□□□□ -0.22
SHMT2-231	ENST00000557433	SPINK14	Q6IE38	97 aa		13.67	□□□□□ -0.22
SHMT2-231	ENST00000557433	TMEM144	Q7Z5S9	345 aa		13.67	□□□□□ -0.22
SHMT2-231	ENST00000557433	MRPL52	Q86TS9	123 aa	Known RBP	13.67	□□□□□ -0.22
SHMT2-231	ENST00000557433	MRPL41	Q8IXM3	137 aa	Known RBP	13.67	□□□□□ -0.22
SHMT2-231	ENST00000557433	FAM216A	Q8WUB2	273 aa		13.67	□□□□□ -0.22
SHMT2-231	ENST00000557433	TMEM37	Q8WXS4	190 aa		13.67	□□□□□ -0.22
SHMT2-231	ENST00000557433	MISP3	Q96FF7	219 aa		13.67	□□□□□ -0.22
SHMT2-231	ENST00000557433	OR2D2	Q9H210	308 aa		13.67	□□□□□ -0.22
SHMT2-231	ENST00000557433	TRAV9-1	A0A075B6T8	112 aa		13.66	□□□□□ -0.22
SHMT2-231	ENST00000557433	FAM90A9P	A6NNJ1	464 aa		13.66	□□□□□ -0.22
SHMT2-231	ENST00000557433	MT-CO3	P00414	261 aa		13.66	□□□□□ -0.22
SHMT2-231	ENST00000557433	G6PC	P35575	357 aa		13.66	□□□□□ -0.22
SHMT2-231	ENST00000557433	RPP30	P78346	268 aa	Known RBP	13.66	□□□□□ -0.22
SHMT2-231	ENST00000557433	H2BFWT	Q7Z2G1	175 aa		13.66	□□□□□ -0.22
SHMT2-231	ENST00000557433	LINC01551	Q86U37	167 aa		13.66	□□□□□ -0.22
SHMT2-231	ENST00000557433	NINJ1	Q92982	152 aa		13.66	□□□□□ -0.22
SHMT2-231	ENST00000557433	THOC3	Q96J01	351 aa	Known RBP	13.66	□□□□□ -0.22
SHMT2-231	ENST00000557433	CLN8	Q9UBY8	286 aa		13.66	□□□□□ -0.22
SHMT2-231	ENST00000557433	WDR83OS	Q9Y284	106 aa		13.66	□□□□□ -0.22
SHMT2-231	ENST00000557433	RANBP2	P49792	3224 aa	Known RBP	13.66	□□□□□ -0.22
SHMT2-231	ENST00000557433	KMT2E	Q8IZD2	1858 aa		13.66	□□□□□ -0.22
SHMT2-231	ENST00000557433	TRAV39	A0A0B4J263	110 aa		13.66	□□□□□ -0.22
SHMT2-231	ENST00000557433	HAND1	O96004	215 aa		13.66	□□□□□ -0.22
SHMT2-231	ENST00000557433	PDGFB	P01127	241 aa	Predicted RBP	13.66	□□□□□ -0.22
SHMT2-231	ENST00000557433	RPL15	P61313	204 aa	Known RBP	13.66	□□□□□ -0.22
SHMT2-231	ENST00000557433	RTP5	Q14D33	572 aa		13.66	□□□□□ -0.22
SHMT2-231	ENST00000557433	USF2	Q15853	346 aa	Predicted RBP	13.66	□□□□□ -0.22
SHMT2-231	ENST00000557433	WDR86	Q86TI4	376 aa		13.66	□□□□□ -0.22
SHMT2-231	ENST00000557433	WDYHV1	Q96HA8	205 aa		13.66	□□□□□ -0.22
SHMT2-231	ENST00000557433	GMPPA	Q96IJ6	420 aa	Predicted RBP	13.66	□□□□□ -0.22
SHMT2-231	ENST00000557433	HSD17B10	Q99714	261 aa	Known RBP	13.66	□□□□□ -0.22
SHMT2-231	ENST00000557433	HES4	Q9HCC6	221 aa		13.66	□□□□□ -0.22
SHMT2-231	ENST00000557433	RAMP3	O60896	148 aa		13.65	□□□□□ -0.22
SHMT2-231	ENST00000557433	WISP2	O76076	250 aa		13.65	□□□□□ -0.22
SHMT2-231	ENST00000557433	IL3RA	P26951	378 aa		13.65	□□□□□ -0.22
SHMT2-231	ENST00000557433	MPL	P40238	635 aa		13.65	□□□□□ -0.22
SHMT2-231	ENST00000557433	PAX5	Q02548	391 aa		13.65	□□□□□ -0.22
SHMT2-231	ENST00000557433	TFF3	Q07654	80 aa		13.65	□□□□□ -0.22
SHMT2-231	ENST00000557433	AARD	Q4LEZ3	155 aa		13.65	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms