RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 WASHC3Q9Y3C0 194 aa0.69□□□□□ -2.3
SCFD1-216ENST00000555550 ARHGAP32A7KAX9 2087 aa0.69□□□□□ -2.3
SCFD1-216ENST00000555550 A0A1W2PP64 1363 aa0.69□□□□□ -2.3
SCFD1-216ENST00000555550 ERICH2A1L162 156 aa0.68□□□□□ -2.3
SCFD1-216ENST00000555550 I3L4J1 428 aa0.68□□□□□ -2.3
SCFD1-216ENST00000555550 J3QQQ9 107 aa0.68□□□□□ -2.3
SCFD1-216ENST00000555550 BIRC5O15392 142 aa0.68□□□□□ -2.3
SCFD1-216ENST00000555550 ATP8B1O43520 1251 aa0.68□□□□□ -2.3
SCFD1-216ENST00000555550 DSCAMO60469 2012 aa0.68□□□□□ -2.3
SCFD1-216ENST00000555550 ASS1P00966 412 aaKnown RBP0.68□□□□□ -2.3
SCFD1-216ENST00000555550 CCL3P10147 92 aa0.68□□□□□ -2.3
SCFD1-216ENST00000555550 COX5BP10606 129 aa0.68□□□□□ -2.3
SCFD1-216ENST00000555550 CDK2P24941 298 aa0.68□□□□□ -2.3
SCFD1-216ENST00000555550 PEBP1P30086 187 aaKnown RBP0.68□□□□□ -2.3
SCFD1-216ENST00000555550 HSPA9P38646 679 aaKnown RBP0.68□□□□□ -2.3
SCFD1-216ENST00000555550 LPAR6P43657 344 aa0.68□□□□□ -2.3
SCFD1-216ENST00000555550 CBX5P45973 191 aa0.68□□□□□ -2.3
SCFD1-216ENST00000555550 SNAP25P60880 206 aa0.68□□□□□ -2.3
SCFD1-216ENST00000555550 RPL26P61254 145 aaKnown RBP0.68□□□□□ -2.3
SCFD1-216ENST00000555550 TPRXLQ17RH7 258 aa0.68□□□□□ -2.3
SCFD1-216ENST00000555550 HLA-DRB5Q30154 266 aa0.68□□□□□ -2.3
SCFD1-216ENST00000555550 HENMT1Q5T8I9 393 aaKnown RBP0.68□□□□□ -2.3
SCFD1-216ENST00000555550 SYPL2Q5VXT5 272 aa0.68□□□□□ -2.3
SCFD1-216ENST00000555550 LCN8Q6JVE9 175 aa0.68□□□□□ -2.3
SCFD1-216ENST00000555550 ALKAL1Q6UXT8 129 aa0.68□□□□□ -2.3
SCFD1-216ENST00000555550 CRLF3Q8IUI8 442 aa0.68□□□□□ -2.3
SCFD1-216ENST00000555550 FUNDC1Q8IVP5 155 aa0.68□□□□□ -2.3
SCFD1-216ENST00000555550 NAV1Q8NEY1 1877 aa0.68□□□□□ -2.3
SCFD1-216ENST00000555550 OR5D18Q8NGL1 313 aa0.68□□□□□ -2.3
SCFD1-216ENST00000555550 OR4P4Q8NGL7 312 aa0.68□□□□□ -2.3
SCFD1-216ENST00000555550 SLC37A2Q8TED4 501 aa0.68□□□□□ -2.3
SCFD1-216ENST00000555550 TNFAIP8L1Q8WVP5 186 aa0.68□□□□□ -2.3
SCFD1-216ENST00000555550 ASB13Q8WXK3 278 aa0.68□□□□□ -2.3
SCFD1-216ENST00000555550 RETNLBQ9BQ08 111 aa0.68□□□□□ -2.3
SCFD1-216ENST00000555550 Q9BRP9 147 aa0.68□□□□□ -2.3
SCFD1-216ENST00000555550 ZNF471Q9BX82 626 aaPredicted RBP0.68□□□□□ -2.3
SCFD1-216ENST00000555550 GTSF1LQ9H1H1 148 aa0.68□□□□□ -2.3
SCFD1-216ENST00000555550 CHMP5Q9NZZ3 219 aa0.68□□□□□ -2.3
SCFD1-216ENST00000555550 RPL26L1Q9UNX3 145 aaKnown RBP0.68□□□□□ -2.3
SCFD1-216ENST00000555550 ATP6V1DQ9Y5K8 247 aa0.68□□□□□ -2.3
SCFD1-216ENST00000555550 ABCC12Q96J65 1359 aa0.68□□□□□ -2.3
SCFD1-216ENST00000555550 FN1P02751 2386 aaKnown RBP0.68□□□□□ -2.3
SCFD1-216ENST00000555550 EFCAB9A8MZ26 197 aa0.67□□□□□ -2.3
SCFD1-216ENST00000555550 C21orf140B9A014 251 aa0.67□□□□□ -2.3
SCFD1-216ENST00000555550 H3BSA7 217 aa0.67□□□□□ -2.3
SCFD1-216ENST00000555550 AZIN1O14977 448 aa0.67□□□□□ -2.3
SCFD1-216ENST00000555550 DENRO43583 198 aaKnown RBP0.67□□□□□ -2.3
SCFD1-216ENST00000555550 CXCL2P19875 107 aa0.67□□□□□ -2.3
SCFD1-216ENST00000555550 CXCL3P19876 107 aa0.67□□□□□ -2.3
SCFD1-216ENST00000555550 CCL1P22362 96 aa0.67□□□□□ -2.3
SCFD1-216ENST00000555550 GRPRP30550 384 aa0.67□□□□□ -2.3
SCFD1-216ENST00000555550 PYCR1P32322 319 aa0.67□□□□□ -2.3
SCFD1-216ENST00000555550 GABRA3P34903 492 aa0.67□□□□□ -2.3
SCFD1-216ENST00000555550 PSMB3P49720 205 aa0.67□□□□□ -2.3
SCFD1-216ENST00000555550 MAP3K7CLP57077 242 aa0.67□□□□□ -2.3
SCFD1-216ENST00000555550 RAB2AP61019 212 aa0.67□□□□□ -2.3
SCFD1-216ENST00000555550 RPS24P62847 133 aaKnown RBP0.67□□□□□ -2.3
SCFD1-216ENST00000555550 DYNLL1P63167 89 aaKnown RBP0.67□□□□□ -2.3
SCFD1-216ENST00000555550 UBE2IP63279 158 aaKnown RBP0.67□□□□□ -2.3
SCFD1-216ENST00000555550 GTF2BQ00403 316 aa0.67□□□□□ -2.3
SCFD1-216ENST00000555550 TMEM267Q0VDI3 215 aaPredicted RBP0.67□□□□□ -2.3
SCFD1-216ENST00000555550 MLLT11Q13015 90 aaPredicted RBP0.67□□□□□ -2.3
SCFD1-216ENST00000555550 MED21Q13503 144 aa0.67□□□□□ -2.3
SCFD1-216ENST00000555550 SLC36A2Q495M3 483 aa0.67□□□□□ -2.3
SCFD1-216ENST00000555550 CENPWQ5EE01 88 aa0.67□□□□□ -2.3
SCFD1-216ENST00000555550 SFXN4Q6P4A7 337 aa0.67□□□□□ -2.3
SCFD1-216ENST00000555550 OLIG3Q7RTU3 272 aa0.67□□□□□ -2.3
SCFD1-216ENST00000555550 COA5Q86WW8 74 aa0.67□□□□□ -2.3
SCFD1-216ENST00000555550 OR10D3Q8NH80 312 aa0.67□□□□□ -2.3
SCFD1-216ENST00000555550 CCDC12Q8WUD4 166 aaPredicted RBP0.67□□□□□ -2.3
SCFD1-216ENST00000555550 LRRC45Q96CN5 670 aa0.67□□□□□ -2.3
SCFD1-216ENST00000555550 ACY3Q96HD9 319 aa0.67□□□□□ -2.3
SCFD1-216ENST00000555550 PARVGQ9HBI0 331 aa0.67□□□□□ -2.3
SCFD1-216ENST00000555550 SLC2A9Q9NRM0 540 aa0.67□□□□□ -2.3
SCFD1-216ENST00000555550 PSMD13Q9UNM6 376 aa0.67□□□□□ -2.3
SCFD1-216ENST00000555550 DENND4BO75064 1496 aaPredicted RBP0.67□□□□□ -2.3
SCFD1-216ENST00000555550 WDR90Q96KV7 1748 aa0.67□□□□□ -2.3
SCFD1-216ENST00000555550 MUC5ACP98088 5654 aa0.66□□□□□ -2.3
SCFD1-216ENST00000555550 FBN2P35556 2912 aa0.66□□□□□ -2.3
SCFD1-216ENST00000555550 C1orf232A0A0U1RR37 186 aa0.66□□□□□ -2.3
SCFD1-216ENST00000555550 M0QYV0 167 aa0.66□□□□□ -2.3
SCFD1-216ENST00000555550 CCRL2O00421 344 aa0.66□□□□□ -2.3
SCFD1-216ENST00000555550 HPGDSO60760 199 aa0.66□□□□□ -2.3
SCFD1-216ENST00000555550 NIPSNAP2O75323 286 aa0.66□□□□□ -2.3
SCFD1-216ENST00000555550 KRT75O95678 551 aa0.66□□□□□ -2.3
SCFD1-216ENST00000555550 SOD1P00441 154 aa0.66□□□□□ -2.3
SCFD1-216ENST00000555550 CD79BP40259 229 aa0.66□□□□□ -2.3
SCFD1-216ENST00000555550 ACTR1BP42025 376 aa0.66□□□□□ -2.3
SCFD1-216ENST00000555550 TNFAIP6P98066 277 aaPredicted RBP0.66□□□□□ -2.3
SCFD1-216ENST00000555550 BSPH1Q075Z2 132 aa0.66□□□□□ -2.3
SCFD1-216ENST00000555550 MRPL51Q4U2R6 128 aaKnown RBP0.66□□□□□ -2.3
SCFD1-216ENST00000555550 TRMT12Q53H54 448 aaKnown RBP0.66□□□□□ -2.3
SCFD1-216ENST00000555550 SDHAF4Q5VUM1 108 aa0.66□□□□□ -2.3
SCFD1-216ENST00000555550 C1orf158Q8N1D5 194 aa0.66□□□□□ -2.3
SCFD1-216ENST00000555550 TMEM251Q8N6I4 163 aa0.66□□□□□ -2.3
SCFD1-216ENST00000555550 OR51H1Q8NH63 302 aa0.66□□□□□ -2.3
SCFD1-216ENST00000555550 OR5K1Q8NHB7 308 aa0.66□□□□□ -2.3
SCFD1-216ENST00000555550 CHMP4BQ9H444 224 aaKnown RBP0.66□□□□□ -2.3
SCFD1-216ENST00000555550 DMAC2Q9NW81 257 aa0.66□□□□□ -2.3
SCFD1-216ENST00000555550 LINC00527Q9UJ94 153 aa0.66□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms