RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 DTYMKP23919 212 aa12.58□□□□□ -0.4
CCDC88C-209ENST00000554872 PSMB8P28062 276 aa12.58□□□□□ -0.4
CCDC88C-209ENST00000554872 MYCNOSP40205 109 aa12.58□□□□□ -0.4
CCDC88C-209ENST00000554872 CXorf66Q5JRM2 361 aaPredicted RBP12.58□□□□□ -0.4
CCDC88C-209ENST00000554872 FAM131AQ6UXB0 335 aa12.58□□□□□ -0.4
CCDC88C-209ENST00000554872 ZNF695Q8IW36 515 aa12.58□□□□□ -0.4
CCDC88C-209ENST00000554872 ABHD14BQ96IU4 210 aa12.58□□□□□ -0.4
CCDC88C-209ENST00000554872 RITA1Q96K30 269 aa12.58□□□□□ -0.4
CCDC88C-209ENST00000554872 KCTD7Q96MP8 289 aa12.58□□□□□ -0.4
CCDC88C-209ENST00000554872 OR51J1Q9H342 316 aa12.58□□□□□ -0.4
CCDC88C-209ENST00000554872 RDH8Q9NYR8 311 aa12.58□□□□□ -0.4
CCDC88C-209ENST00000554872 KIAA1456Q9P272 454 aa12.58□□□□□ -0.4
CCDC88C-209ENST00000554872 WASHC3Q9Y3C0 194 aa12.58□□□□□ -0.4
CCDC88C-209ENST00000554872 DNAH3Q8TD57 4116 aa12.58□□□□□ -0.4
CCDC88C-209ENST00000554872 IGHV7-81A0A0B4J1V7 117 aa12.57□□□□□ -0.4
CCDC88C-209ENST00000554872 RRHO14718 337 aa12.57□□□□□ -0.4
CCDC88C-209ENST00000554872 GNB3P16520 340 aa12.57□□□□□ -0.4
CCDC88C-209ENST00000554872 PPIFP30405 207 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-209ENST00000554872 C19orf54Q5BKX5 351 aa12.57□□□□□ -0.4
CCDC88C-209ENST00000554872 SFXN4Q6P4A7 337 aa12.57□□□□□ -0.4
CCDC88C-209ENST00000554872 MRPL41Q8IXM3 137 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-209ENST00000554872 ZNF221Q9UK13 617 aa12.57□□□□□ -0.4
CCDC88C-209ENST00000554872 RRP15Q9Y3B9 282 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-209ENST00000554872 A0A0B4J203 849 aa12.56□□□□□ -0.4
CCDC88C-209ENST00000554872 IGLV1-40P01703 118 aa12.56□□□□□ -0.4
CCDC88C-209ENST00000554872 SLC2A2P11168 524 aaPredicted RBP12.56□□□□□ -0.4
CCDC88C-209ENST00000554872 IGLL1P15814 213 aa12.56□□□□□ -0.4
CCDC88C-209ENST00000554872 CNTFRP26992 372 aa12.56□□□□□ -0.4
CCDC88C-209ENST00000554872 ZNF660Q6AZW8 331 aaPredicted RBP12.56□□□□□ -0.4
CCDC88C-209ENST00000554872 LIN54Q6MZP7 749 aa12.56□□□□□ -0.4
CCDC88C-209ENST00000554872 C8orf86Q6ZUL3 223 aa12.56□□□□□ -0.4
CCDC88C-209ENST00000554872 PDPNQ86YL7 162 aa12.56□□□□□ -0.4
CCDC88C-209ENST00000554872 TCTEX1D1Q8N7M0 179 aa12.56□□□□□ -0.4
CCDC88C-209ENST00000554872 KLHL30-AS1Q8NEE0 82 aa12.56□□□□□ -0.4
CCDC88C-209ENST00000554872 MCRIP2Q9BUT9 160 aaKnown RBP12.56□□□□□ -0.4
CCDC88C-209ENST00000554872 OR51E2Q9H255 320 aa12.56□□□□□ -0.4
CCDC88C-209ENST00000554872 ATP6V0E1O15342 81 aa12.55□□□□□ -0.4
CCDC88C-209ENST00000554872 RPLP1P05386 114 aaKnown RBP12.55□□□□□ -0.4
CCDC88C-209ENST00000554872 TFAP2AP05549 437 aa12.55□□□□□ -0.4
CCDC88C-209ENST00000554872 GSTP1P09211 210 aaKnown RBP12.55□□□□□ -0.4
CCDC88C-209ENST00000554872 PITPNAQ00169 270 aa12.55□□□□□ -0.4
CCDC88C-209ENST00000554872 TAGLNQ01995 201 aaKnown RBP12.55□□□□□ -0.4
CCDC88C-209ENST00000554872 EGFEM1PQ0D2K5 195 aa12.55□□□□□ -0.4
CCDC88C-209ENST00000554872 HACD4Q5VWC8 232 aa12.55□□□□□ -0.4
CCDC88C-209ENST00000554872 FOXB2Q5VYV0 432 aa12.55□□□□□ -0.4
CCDC88C-209ENST00000554872 MINDY2Q8NBR6 621 aa12.55□□□□□ -0.4
CCDC88C-209ENST00000554872 OR8U1Q8NH10 309 aa12.55□□□□□ -0.4
CCDC88C-209ENST00000554872 OR10J5Q8NHC4 309 aa12.55□□□□□ -0.4
CCDC88C-209ENST00000554872 C4orf3Q8WVX3 66 aa12.55□□□□□ -0.4
CCDC88C-209ENST00000554872 RBMXL1Q96E39 390 aaKnown RBP12.55□□□□□ -0.4
CCDC88C-209ENST00000554872 ATG5Q9H1Y0 275 aa12.55□□□□□ -0.4
CCDC88C-209ENST00000554872 DCSTAMPQ9H295 470 aa12.55□□□□□ -0.4
CCDC88C-209ENST00000554872 ETV7Q9Y603 341 aa12.55□□□□□ -0.4
CCDC88C-209ENST00000554872 NUDT19A8MXV4 375 aa12.54□□□□□ -0.4
CCDC88C-209ENST00000554872 GSTT2P0CG29 244 aa12.54□□□□□ -0.4
CCDC88C-209ENST00000554872 GSTT2BP0CG30 244 aa12.54□□□□□ -0.4
CCDC88C-209ENST00000554872 SDC2P34741 201 aa12.54□□□□□ -0.4
CCDC88C-209ENST00000554872 RUNX1Q01196 453 aa12.54□□□□□ -0.4
CCDC88C-209ENST00000554872 FHL3Q13643 280 aa12.54□□□□□ -0.4
CCDC88C-209ENST00000554872 ARFRP1Q13795 201 aa12.54□□□□□ -0.4
CCDC88C-209ENST00000554872 TIMM50Q3ZCQ8 353 aa12.54□□□□□ -0.4
CCDC88C-209ENST00000554872 IGSF11Q5DX21 431 aa12.54□□□□□ -0.4
CCDC88C-209ENST00000554872 C18orf65Q6ZTR6 163 aa12.54□□□□□ -0.4
CCDC88C-209ENST00000554872 ZNF383Q8NA42 475 aa12.54□□□□□ -0.4
CCDC88C-209ENST00000554872 TSNAXQ99598 290 aaKnown RBP12.54□□□□□ -0.4
CCDC88C-209ENST00000554872 DAPK2Q9UIK4 370 aa12.54□□□□□ -0.4
CCDC88C-209ENST00000554872 A0A0A6YYH2 397 aa12.53□□□□□ -0.4
CCDC88C-209ENST00000554872 TRAV41A0A0B4J266 112 aa12.53□□□□□ -0.4
CCDC88C-209ENST00000554872 A6NJ64 397 aa12.53□□□□□ -0.4
CCDC88C-209ENST00000554872 H7C2Y5 167 aa12.53□□□□□ -0.4
CCDC88C-209ENST00000554872 CCL24O00175 119 aa12.53□□□□□ -0.4
CCDC88C-209ENST00000554872 APOA2P02652 100 aa12.53□□□□□ -0.4
CCDC88C-209ENST00000554872 CTXN2P0C2S0 81 aa12.53□□□□□ -0.4
CCDC88C-209ENST00000554872 CD36P16671 472 aa12.53□□□□□ -0.4
CCDC88C-209ENST00000554872 TALDO1P37837 337 aa12.53□□□□□ -0.4
CCDC88C-209ENST00000554872 NDPQ00604 133 aa12.53□□□□□ -0.4
CCDC88C-209ENST00000554872 CDNFQ49AH0 187 aa12.53□□□□□ -0.4
CCDC88C-209ENST00000554872 GLDNQ6ZMI3 551 aaPredicted RBP12.53□□□□□ -0.4
CCDC88C-209ENST00000554872 H1FOOQ8IZA3 346 aaPredicted RBP12.53□□□□□ -0.4
CCDC88C-209ENST00000554872 LGALS14Q8TCE9 139 aa12.53□□□□□ -0.4
CCDC88C-209ENST00000554872 RAX2Q96IS3 184 aa12.53□□□□□ -0.4
CCDC88C-209ENST00000554872 UBE2E2Q96LR5 201 aa12.53□□□□□ -0.4
CCDC88C-209ENST00000554872 AURKAIP1Q9NWT8 199 aaPredicted RBP12.53□□□□□ -0.4
CCDC88C-209ENST00000554872 RHBDL2Q9NX52 303 aa12.53□□□□□ -0.4
CCDC88C-209ENST00000554872 SMIM30A4D0T7 59 aa12.52□□□□□ -0.41
CCDC88C-209ENST00000554872 BET1O15155 118 aa12.52□□□□□ -0.41
CCDC88C-209ENST00000554872 IGKV1-16P04430 117 aa12.52□□□□□ -0.41
CCDC88C-209ENST00000554872 CX3CL1P78423 397 aa12.52□□□□□ -0.41
CCDC88C-209ENST00000554872 KIAA0141Q14154 515 aaPredicted RBP12.52□□□□□ -0.41
CCDC88C-209ENST00000554872 PSG5Q15238 335 aa12.52□□□□□ -0.41
CCDC88C-209ENST00000554872 NEDD8Q15843 81 aa12.52□□□□□ -0.41
CCDC88C-209ENST00000554872 ZNF260Q3ZCT1 412 aa12.52□□□□□ -0.41
CCDC88C-209ENST00000554872 ZNF562Q6V9R5 426 aa12.52□□□□□ -0.41
CCDC88C-209ENST00000554872 OR2D2Q9H210 308 aa12.52□□□□□ -0.41
CCDC88C-209ENST00000554872 FBXL15Q9H469 300 aa12.52□□□□□ -0.41
CCDC88C-209ENST00000554872 PARP11Q9NR21 331 aa12.52□□□□□ -0.41
CCDC88C-209ENST00000554872 SDHAF2Q9NX18 166 aa12.52□□□□□ -0.41
CCDC88C-209ENST00000554872 ZNF230Q9UIE0 474 aaPredicted RBP12.52□□□□□ -0.41
CCDC88C-209ENST00000554872 RNF150Q9ULK6 438 aa12.52□□□□□ -0.41
CCDC88C-209ENST00000554872 A0A075B6Q4 140 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms