RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 GSTT2BP0CG30 244 aa8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 SNRPBP14678 240 aaKnown RBP8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 CD36P16671 472 aa8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 SOX6P35712 828 aa8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 LINC00205P59089 165 aa8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 RPL23AP62750 156 aaKnown RBP8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 MMDQ15546 238 aa8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 SRSF7Q16629 238 aaKnown RBP eCLIP8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 CDNFQ49AH0 187 aa8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 OXLD1Q5BKU9 147 aa8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 IGSF11Q5DX21 431 aa8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 FAM131AQ6UXB0 335 aa8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 Q6ZS49 121 aa8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 C18orf65Q6ZTR6 163 aa8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 COMMD1Q8N668 190 aa8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 OR5AN1Q8NGI8 311 aa8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 EDARADDQ8WWZ3 215 aa8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 PHF21AQ96BD5 680 aa8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 CENPOQ9BU64 300 aa8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 ATG5Q9H1Y0 275 aa8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 RDH8Q9NYR8 311 aa8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 ZNF230Q9UIE0 474 aaPredicted RBP8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 ZNF107Q9UII5 783 aaPredicted RBP8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 DAPK2Q9UIK4 370 aa8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 ZNF580Q9UK33 172 aa8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 RNF150Q9ULK6 438 aa8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 TRBV6-7A0A0A0MS04 114 aa8.06□□□□□ -1.12
CCDC88C-206ENST00000553437 OR5H14A6NHG9 310 aa8.06□□□□□ -1.12
CCDC88C-206ENST00000553437 NBR2O15453 112 aa8.06□□□□□ -1.12
CCDC88C-206ENST00000553437 DIRAS3O95661 229 aa8.06□□□□□ -1.12
CCDC88C-206ENST00000553437 HLA-DRB1P01911 266 aa8.06□□□□□ -1.12
CCDC88C-206ENST00000553437 PF4V1P10720 104 aa8.06□□□□□ -1.12
CCDC88C-206ENST00000553437 SERPINB10P48595 397 aa8.06□□□□□ -1.12
CCDC88C-206ENST00000553437 SLC35B1P78383 322 aa8.06□□□□□ -1.12
CCDC88C-206ENST00000553437 MRPS15P82914 257 aaKnown RBP8.06□□□□□ -1.12
CCDC88C-206ENST00000553437 MXD1Q05195 221 aa8.06□□□□□ -1.12
CCDC88C-206ENST00000553437 KIR2DS1Q14954 304 aa8.06□□□□□ -1.12
CCDC88C-206ENST00000553437 PNLIPRP3Q17RR3 467 aa8.06□□□□□ -1.12
CCDC88C-206ENST00000553437 C5orf64Q2M2E5 130 aa8.06□□□□□ -1.12
CCDC88C-206ENST00000553437 KHDC1LQ5JSQ8 128 aa8.06□□□□□ -1.12
CCDC88C-206ENST00000553437 TEX38Q6PEX7 206 aa8.06□□□□□ -1.12
CCDC88C-206ENST00000553437 GLDNQ6ZMI3 551 aaPredicted RBP8.06□□□□□ -1.12
CCDC88C-206ENST00000553437 ETV3LQ6ZN32 361 aa8.06□□□□□ -1.12
CCDC88C-206ENST00000553437 RNF152Q8N8N0 203 aa8.06□□□□□ -1.12
CCDC88C-206ENST00000553437 LGALS14Q8TCE9 139 aa8.06□□□□□ -1.12
CCDC88C-206ENST00000553437 MAFIPQ8WZ33 124 aa8.06□□□□□ -1.12
CCDC88C-206ENST00000553437 C5orf30Q96GV9 206 aa8.06□□□□□ -1.12
CCDC88C-206ENST00000553437 ZFP57Q9NU63 452 aa8.06□□□□□ -1.12
CCDC88C-206ENST00000553437 GAB2Q9UQC2 676 aa8.06□□□□□ -1.12
CCDC88C-206ENST00000553437 IGHV7-81A0A0B4J1V7 117 aa8.05□□□□□ -1.12
CCDC88C-206ENST00000553437 LOC100506127A0A0U1RQW1 187 aa8.05□□□□□ -1.12
CCDC88C-206ENST00000553437 BET1O15155 118 aa8.05□□□□□ -1.12
CCDC88C-206ENST00000553437 NOL3O60936 208 aaKnown RBP8.05□□□□□ -1.12
CCDC88C-206ENST00000553437 DTYMKP23919 212 aa8.05□□□□□ -1.12
CCDC88C-206ENST00000553437 PPIFP30405 207 aaKnown RBP8.05□□□□□ -1.12
CCDC88C-206ENST00000553437 MC5RP33032 325 aa8.05□□□□□ -1.12
CCDC88C-206ENST00000553437 FOXE3Q13461 319 aa8.05□□□□□ -1.12
CCDC88C-206ENST00000553437 ARFRP1Q13795 201 aa8.05□□□□□ -1.12
CCDC88C-206ENST00000553437 ARL6IP1Q15041 203 aa8.05□□□□□ -1.12
CCDC88C-206ENST00000553437 ZNF260Q3ZCT1 412 aa8.05□□□□□ -1.12
CCDC88C-206ENST00000553437 HACD4Q5VWC8 232 aa8.05□□□□□ -1.12
CCDC88C-206ENST00000553437 LIN54Q6MZP7 749 aa8.05□□□□□ -1.12
CCDC88C-206ENST00000553437 LCNL1Q6ZST4 164 aa8.05□□□□□ -1.12
CCDC88C-206ENST00000553437 LINC00482Q8N8I6 264 aa8.05□□□□□ -1.12
CCDC88C-206ENST00000553437 ZNF383Q8NA42 475 aa8.05□□□□□ -1.12
CCDC88C-206ENST00000553437 DRAXINQ8NBI3 349 aaPredicted RBP8.05□□□□□ -1.12
CCDC88C-206ENST00000553437 OR5H6Q8NGV6 325 aa8.05□□□□□ -1.12
CCDC88C-206ENST00000553437 SLC25A38Q96DW6 304 aa8.05□□□□□ -1.12
CCDC88C-206ENST00000553437 YIPF6Q96EC8 236 aa8.05□□□□□ -1.12
CCDC88C-206ENST00000553437 OR51J1Q9H342 316 aa8.05□□□□□ -1.12
CCDC88C-206ENST00000553437 ZNF221Q9UK13 617 aa8.05□□□□□ -1.12
CCDC88C-206ENST00000553437 FCN1O00602 326 aa8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 RRHO14718 337 aa8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 ATP6V0E1O15342 81 aa8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 SSX5O60225 188 aa8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 RBBP9O75884 186 aa8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 IGHG4P01861 327 aa8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 PF4P02776 101 aa8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 RPLP1P05386 114 aaKnown RBP8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 ELANEP08246 267 aa8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 GSTP1P09211 210 aaKnown RBP8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 OR8U9P0C7N5 309 aa8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 IGLL1P15814 213 aa8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 CD33P20138 364 aa8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 TGFBR1P36897 503 aa8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 TALDO1P37837 337 aa8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 THBS3P49746 956 aa8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 SCAND1P57086 179 aa8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 NDPQ00604 133 aa8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 KIAA0141Q14154 515 aaPredicted RBP8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 C8orf86Q6ZUL3 223 aa8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 CLVS1Q8IUQ0 354 aaPredicted RBP8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 MRPL41Q8IXM3 137 aaKnown RBP8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 H1FOOQ8IZA3 346 aaPredicted RBP8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 OR8U1Q8NH10 309 aa8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 OR10J5Q8NHC4 309 aa8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 MYOZ3Q8TDC0 251 aa8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 P2RX4Q99571 388 aa8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 RNF5Q99942 180 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 107.1 ms