RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 UBE2ZQ9H832 354 aaPredicted RBP4.57□□□□□ -1.68
LIMA1-212ENST00000552491 TMEM265A0A087WTH1 108 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 A0A1B0GUS0 222 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 A0A1W2PPQ1 181 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 XKRY2A2RUG3 117 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 NPIPB11E5RHQ5 1161 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 PPP5D1E7EU14 171 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 EREGO14944 169 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 DEGS1O15121 323 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 MRPL33O75394 65 aaKnown RBP4.57□□□□□ -1.68
LIMA1-212ENST00000552491 GCGP01275 180 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 OR4A8P0C604 315 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 COX5BP10606 129 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 OTX2P32243 289 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 GALR1P47211 349 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 SPINK14Q6IE38 97 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 TCEAL6Q6IPX3 200 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 ZNF66Q6ZN08 573 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 WDR86Q86TI4 376 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 FGFRL1Q8N441 504 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 DRAM1Q8N682 238 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 BEND2Q8NDZ0 799 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 TMEM37Q8WXS4 190 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 RAB24Q969Q5 203 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 APOBEC3DQ96AK3 386 aaPredicted RBP4.57□□□□□ -1.68
LIMA1-212ENST00000552491 ACY3Q96HD9 319 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 OR5B12Q96R08 314 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 HES7Q9BYE0 225 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 AURKAIP1Q9NWT8 199 aaPredicted RBP4.57□□□□□ -1.68
LIMA1-212ENST00000552491 MRPS18CQ9Y3D5 142 aaKnown RBP4.57□□□□□ -1.68
LIMA1-212ENST00000552491 TIMM9Q9Y5J7 89 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 LOC400499M0QZD8 3231 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 PMS2P5A8MQ11 134 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 ZNF705GA8MUZ8 300 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-212ENST00000552491 C1QTNF9BB2RNN3 333 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 FAM90A26D6RGX4 464 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 H7BYZ3 331 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 SIRPB1O00241 398 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 CLDN1O95832 211 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 SELEP16581 610 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 EGR1P18146 543 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 BMP5P22003 454 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 CA6P23280 308 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 COL8A2P25067 703 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 PSMB3P49720 205 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 PDLIM4P50479 330 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 FAM3BP58499 235 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-212ENST00000552491 BRWD1-AS2P59051 145 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 LINC00205P59089 165 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 RPL30P62888 115 aaKnown RBP4.56□□□□□ -1.68
LIMA1-212ENST00000552491 TFF3Q07654 80 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 SPATA46Q5T0L3 261 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 VASH2Q86V25 355 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 TGIF2LXQ8IUE1 241 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 OR1L1Q8NH94 360 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 LINC00470Q9BZP3 86 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 TMEM9BQ9NQ34 198 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 LIN7CQ9NUP9 197 aaKnown RBP4.56□□□□□ -1.68
LIMA1-212ENST00000552491 CLN8Q9UBY8 286 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 KCNS2Q9ULS6 477 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 FUT9Q9Y231 359 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 DSPP15924 2871 aaKnown RBP4.56□□□□□ -1.68
LIMA1-212ENST00000552491 IGKV3D-15A0A087WSY6 115 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 NUPR1O60356 82 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 FOLR3P41439 243 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 CXCL12P48061 93 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 CEBPDP49716 269 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-212ENST00000552491 LHX2P50458 406 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 PMP22Q01453 160 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 TNFRSF9Q07011 255 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 C3AR1Q16581 482 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 SPINK9Q5DT21 86 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 LYSMD4Q5XG99 296 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 ZNF573Q86YE8 665 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 DEFB123Q8N688 67 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 OR5T1Q8NG75 326 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 OR4F5Q8NH21 305 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 TMEM170AQ8WVE7 144 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 ANAPC16Q96DE5 110 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 OR4F4Q96R69 305 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 NDUFAF3Q9BU61 184 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 OR51I2Q9H344 312 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 TP53TG5Q9Y2B4 290 aa4.56□□□□□ -1.68
LIMA1-212ENST00000552491 HCFC1P51610 2035 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 CTXND1A0A1B0GTU2 59 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 PATE3B3GLJ2 98 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 B4E171 279 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 NTN3O00634 580 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-212ENST00000552491 PAGE4O60829 102 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 ZG16O60844 167 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 OR2H2O95918 312 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 HRASP01112 189 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 KRASP01116 189 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 MBP02144 154 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 GYPAP02724 150 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 P0C879 139 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 G6PCP35575 357 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 TSPAN7P41732 249 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 CLDN18P56856 261 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 GNG3P63215 75 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms