RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 TMEM104Q8NE00 496 aa2.69□□□□□ -1.98
LIMA1-206ENST00000550611 BBS1Q8NFJ9 593 aa2.69□□□□□ -1.98
LIMA1-206ENST00000550611 OR4D6Q8NGJ1 314 aa2.69□□□□□ -1.98
LIMA1-206ENST00000550611 HAVCR2Q8TDQ0 301 aa2.69□□□□□ -1.98
LIMA1-206ENST00000550611 ASB17Q8WXJ9 295 aa2.69□□□□□ -1.98
LIMA1-206ENST00000550611 EMG1Q92979 244 aaKnown RBP2.69□□□□□ -1.98
LIMA1-206ENST00000550611 TOMM40LQ969M1 308 aa2.69□□□□□ -1.98
LIMA1-206ENST00000550611 ST6GALNAC6Q969X2 333 aa2.69□□□□□ -1.98
LIMA1-206ENST00000550611 MCUR1Q96AQ8 359 aa2.69□□□□□ -1.98
LIMA1-206ENST00000550611 RPEQ96AT9 228 aa2.69□□□□□ -1.98
LIMA1-206ENST00000550611 KCTD7Q96MP8 289 aa2.69□□□□□ -1.98
LIMA1-206ENST00000550611 APOL4Q9BPW4 351 aa2.69□□□□□ -1.98
LIMA1-206ENST00000550611 NIPSNAP1Q9BPW8 284 aa2.69□□□□□ -1.98
LIMA1-206ENST00000550611 NABP2Q9BQ15 211 aa2.69□□□□□ -1.98
LIMA1-206ENST00000550611 HSPB9Q9BQS6 159 aa2.69□□□□□ -1.98
LIMA1-206ENST00000550611 MROQ9BYG7 248 aa2.69□□□□□ -1.98
LIMA1-206ENST00000550611 GFRA4Q9GZZ7 299 aa2.69□□□□□ -1.98
LIMA1-206ENST00000550611 COMMD4Q9H0A8 199 aa2.69□□□□□ -1.98
LIMA1-206ENST00000550611 CSTL1Q9H114 145 aa2.69□□□□□ -1.98
LIMA1-206ENST00000550611 GNB4Q9HAV0 340 aa2.69□□□□□ -1.98
LIMA1-206ENST00000550611 HMG20AQ9NP66 347 aa2.69□□□□□ -1.98
LIMA1-206ENST00000550611 FGFR1OP2Q9NVK5 253 aa2.69□□□□□ -1.98
LIMA1-206ENST00000550611 RBFOX1Q9NWB1 397 aaKnown RBP2.69□□□□□ -1.98
LIMA1-206ENST00000550611 MRM2Q9UI43 246 aaKnown RBP2.69□□□□□ -1.98
LIMA1-206ENST00000550611 OR52A1Q9UKL2 312 aa2.69□□□□□ -1.98
LIMA1-206ENST00000550611 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP2.69□□□□□ -1.98
LIMA1-206ENST00000550611 PSG11Q9UQ72 335 aa2.69□□□□□ -1.98
LIMA1-206ENST00000550611 VSIG4Q9Y279 399 aa2.69□□□□□ -1.98
LIMA1-206ENST00000550611 R4GMQ9 66 aa2.69□□□□□ -1.98
LIMA1-206ENST00000550611 V9GYQ6 96 aa2.69□□□□□ -1.98
LIMA1-206ENST00000550611 HMCN2Q8NDA2 5059 aa2.69□□□□□ -1.98
LIMA1-206ENST00000550611 SORL1Q92673 2214 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 IGKV3D-20A0A0C4DH25 116 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 IGHV1-3A0A0C4DH29 117 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 A0A1W2PP11 408 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 FUOMA2VDF0 154 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 NCBP2LA6PVI3 153 aaKnown RBP2.68□□□□□ -1.98
LIMA1-206ENST00000550611 C15orf62A8K5M9 175 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 ZNF736B4DX44 427 aaPredicted RBP2.68□□□□□ -1.98
LIMA1-206ENST00000550611 LOC110117498-PIK3R3F6TDL0 507 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 SIRPB1O00241 398 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 SLC33A1O00400 549 aaPredicted RBP2.68□□□□□ -1.98
LIMA1-206ENST00000550611 SH2D1BO14796 132 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 ARPC2O15144 300 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 MAGEB4O15481 346 aaPredicted RBP2.68□□□□□ -1.98
LIMA1-206ENST00000550611 MPZL2O60487 215 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 CCDC22O60826 627 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 SAP30O75446 220 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 IGLV1-51P01701 117 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 MT-ND2P03891 347 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 GAPDHP04406 335 aaKnown RBP2.68□□□□□ -1.98
LIMA1-206ENST00000550611 HMGN1P05114 100 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 CALCBP10092 127 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 CNTFRP26992 372 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 PRDX6P30041 224 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 HTR1FP30939 366 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 SOX6P35712 828 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 RAB9AP51151 201 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 BRWD1-AS2P59051 145 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 KRTAP10-8P60410 259 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 S100A12P80511 92 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 PAX5Q02548 391 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 PDZK1IP1Q13113 114 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 MADCAM1Q13477 382 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 APOFQ13790 326 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 COTL1Q14019 142 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 HES1Q14469 280 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 GINS1Q14691 196 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 CDK5R1Q15078 307 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 ZNF829Q3KNS6 432 aaPredicted RBP2.68□□□□□ -1.98
LIMA1-206ENST00000550611 MAJINQ3KP22 176 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 OR2T5Q6IEZ7 315 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 IL34Q6ZMJ4 242 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 UTS2BQ765I0 119 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 TRAPPC6BQ86SZ2 158 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 AKAP14Q86UN6 197 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 SLC51BQ86UW2 128 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 COMMD2Q86X83 199 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 LINC00311Q8N616 119 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 C8orf31Q8N9H6 132 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 MINDY2Q8NBR6 621 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 CHST4Q8NCG5 386 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 ZNF485Q8NCK3 441 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 CCDC54Q8NEL0 328 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 OR10A7Q8NGE5 316 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 OR51T1Q8NGJ9 327 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 OR6Q1Q8NGQ2 317 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 OR13A1Q8NGR1 328 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 OR2T10Q8NGZ9 312 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 OR2T29Q8NH02 315 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 TRMT10AQ8TBZ6 339 aaKnown RBP2.68□□□□□ -1.98
LIMA1-206ENST00000550611 LEAP2Q969E1 77 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 C10orf35Q96D05 121 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 CMTM5Q96DZ9 223 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 NSMCE2Q96MF7 247 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 S1PR3Q99500 378 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 FEVQ99581 238 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 NEURL2Q9BR09 285 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 CHST5Q9GZS9 411 aa2.68□□□□□ -1.98
LIMA1-206ENST00000550611 TOLLIPQ9H0E2 274 aa2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms