RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 HIVEP1P15822 2718 aa13.02□□□□□ -0.33
PRPF40A-212ENST00000545856 SAA2-SAA4A0A096LPE2 208 aa13.02□□□□□ -0.33
PRPF40A-212ENST00000545856 CENPVL3A0A0U1RRI6 287 aa13.02□□□□□ -0.33
PRPF40A-212ENST00000545856 DHFRP00374 187 aa13.02□□□□□ -0.33
PRPF40A-212ENST00000545856 FSHBP01225 129 aa13.02□□□□□ -0.33
PRPF40A-212ENST00000545856 ARG1P05089 322 aa13.02□□□□□ -0.33
PRPF40A-212ENST00000545856 SAA2P0DJI9 122 aaPredicted RBP13.02□□□□□ -0.33
PRPF40A-212ENST00000545856 ANXA3P12429 323 aa13.02□□□□□ -0.33
PRPF40A-212ENST00000545856 HNF1AP20823 631 aa13.02□□□□□ -0.33
PRPF40A-212ENST00000545856 COX7A1P24310 79 aa13.02□□□□□ -0.33
PRPF40A-212ENST00000545856 KIR2DS2P43631 304 aa13.02□□□□□ -0.33
PRPF40A-212ENST00000545856 THBS3P49746 956 aa13.02□□□□□ -0.33
PRPF40A-212ENST00000545856 CCBE1Q6UXH8 406 aaPredicted RBP13.02□□□□□ -0.33
PRPF40A-212ENST00000545856 ZNF818PQ6ZRF7 136 aa13.02□□□□□ -0.33
PRPF40A-212ENST00000545856 C9orf139Q6ZV77 190 aa13.02□□□□□ -0.33
PRPF40A-212ENST00000545856 SLC25A42Q86VD7 318 aa13.02□□□□□ -0.33
PRPF40A-212ENST00000545856 ODF3L1Q8IXM7 274 aa13.02□□□□□ -0.33
PRPF40A-212ENST00000545856 DRAM1Q8N682 238 aa13.02□□□□□ -0.33
PRPF40A-212ENST00000545856 CD300LFQ8TDQ1 290 aa13.02□□□□□ -0.33
PRPF40A-212ENST00000545856 LHX4Q969G2 390 aa13.02□□□□□ -0.33
PRPF40A-212ENST00000545856 MALSU1Q96EH3 234 aa13.02□□□□□ -0.33
PRPF40A-212ENST00000545856 GALNT14Q96FL9 552 aa13.02□□□□□ -0.33
PRPF40A-212ENST00000545856 SDHAF2Q9NX18 166 aa13.02□□□□□ -0.33
PRPF40A-212ENST00000545856 HIVEP2P31629 2446 aa13.02□□□□□ -0.33
PRPF40A-212ENST00000545856 LY6LH3BQJ8 138 aa13.01□□□□□ -0.33
PRPF40A-212ENST00000545856 SMAD7O15105 426 aaKnown RBP13.01□□□□□ -0.33
PRPF40A-212ENST00000545856 NPFFO15130 113 aa13.01□□□□□ -0.33
PRPF40A-212ENST00000545856 SLC31A2O15432 143 aa13.01□□□□□ -0.33
PRPF40A-212ENST00000545856 RBFOX2O43251 390 aaKnown RBP eCLIP13.01□□□□□ -0.332e-9■■■■■ 32.3
PRPF40A-212ENST00000545856 IGLV2-14P01704 120 aa13.01□□□□□ -0.33
PRPF40A-212ENST00000545856 GAPDHP04406 335 aaKnown RBP13.01□□□□□ -0.33
PRPF40A-212ENST00000545856 IL5P05113 134 aa13.01□□□□□ -0.33
PRPF40A-212ENST00000545856 H2AFB2P0C5Z0 115 aa13.01□□□□□ -0.33
PRPF40A-212ENST00000545856 RRASP10301 218 aa13.01□□□□□ -0.33
PRPF40A-212ENST00000545856 SRPXP78539 464 aa13.01□□□□□ -0.33
PRPF40A-212ENST00000545856 DHODHQ02127 395 aa13.01□□□□□ -0.33
PRPF40A-212ENST00000545856 AANATQ16613 207 aa13.01□□□□□ -0.33
PRPF40A-212ENST00000545856 LDLRAD3Q86YD5 345 aa13.01□□□□□ -0.33
PRPF40A-212ENST00000545856 TGIF2LXQ8IUE1 241 aa13.01□□□□□ -0.33
PRPF40A-212ENST00000545856 SGPP2Q8IWX5 399 aa13.01□□□□□ -0.33
PRPF40A-212ENST00000545856 RTN4IP1Q8WWV3 396 aaPredicted RBP13.01□□□□□ -0.33
PRPF40A-212ENST00000545856 LEAP2Q969E1 77 aa13.01□□□□□ -0.33
PRPF40A-212ENST00000545856 RPEQ96AT9 228 aa13.01□□□□□ -0.33
PRPF40A-212ENST00000545856 ZNF251Q9BRH9 671 aa13.01□□□□□ -0.33
PRPF40A-212ENST00000545856 RTBDNQ9BSG5 229 aaPredicted RBP13.01□□□□□ -0.33
PRPF40A-212ENST00000545856 CCL28Q9NRJ3 127 aa13.01□□□□□ -0.33
PRPF40A-212ENST00000545856 VSIG4Q9Y279 399 aa13.01□□□□□ -0.33
PRPF40A-212ENST00000545856 KCNIP3Q9Y2W7 256 aa13.01□□□□□ -0.33
PRPF40A-212ENST00000545856 NSD1Q96L73 2696 aaPredicted RBP13□□□□□ -0.33
PRPF40A-212ENST00000545856 TRAV40A0A0B4J280 105 aa13□□□□□ -0.33
PRPF40A-212ENST00000545856 INMT-MINDY4F8WBC2 141 aa13□□□□□ -0.33
PRPF40A-212ENST00000545856 HSD17B6O14756 317 aa13□□□□□ -0.33
PRPF40A-212ENST00000545856 ARPC1BO15143 372 aaKnown RBP13□□□□□ -0.33
PRPF40A-212ENST00000545856 RLN1P04808 185 aa13□□□□□ -0.33
PRPF40A-212ENST00000545856 RPA2P15927 270 aa13□□□□□ -0.33
PRPF40A-212ENST00000545856 PIGPP57054 158 aa13□□□□□ -0.33
PRPF40A-212ENST00000545856 KRTAP1-1Q07627 177 aa13□□□□□ -0.33
PRPF40A-212ENST00000545856 EIF4EBP1Q13541 118 aaPredicted RBP13□□□□□ -0.33
PRPF40A-212ENST00000545856 DHRS7BQ6IAN0 325 aaPredicted RBP13□□□□□ -0.33
PRPF40A-212ENST00000545856 ABHD14BQ96IU4 210 aa13□□□□□ -0.33
PRPF40A-212ENST00000545856 PRELID3BQ9Y3B1 194 aa13□□□□□ -0.33
PRPF40A-212ENST00000545856 CRYM-AS1A6NIL9 109 aa12.99□□□□□ -0.33
PRPF40A-212ENST00000545856 A8MV72 311 aaPredicted RBP12.99□□□□□ -0.33
PRPF40A-212ENST00000545856 H0Y980 276 aa12.99□□□□□ -0.33
PRPF40A-212ENST00000545856 MPPED1O15442 326 aa12.99□□□□□ -0.33
PRPF40A-212ENST00000545856 CD99P14209 185 aa12.99□□□□□ -0.33
PRPF40A-212ENST00000545856 F2RP25116 425 aa12.99□□□□□ -0.33
PRPF40A-212ENST00000545856 MC5RP33032 325 aa12.99□□□□□ -0.33
PRPF40A-212ENST00000545856 DUTP33316 252 aaKnown RBP12.99□□□□□ -0.33
PRPF40A-212ENST00000545856 RAB13P51153 203 aa12.99□□□□□ -0.33
PRPF40A-212ENST00000545856 HABP2Q14520 560 aaPredicted RBP12.99□□□□□ -0.33
PRPF40A-212ENST00000545856 TPTE2P1Q5T6R2 138 aa12.99□□□□□ -0.33
PRPF40A-212ENST00000545856 NAA60Q9H7X0 242 aa12.99□□□□□ -0.33
PRPF40A-212ENST00000545856 GPN1Q9HCN4 374 aaPredicted RBP12.99□□□□□ -0.33
PRPF40A-212ENST00000545856 NUP50Q9UKX7 468 aa12.99□□□□□ -0.33
PRPF40A-212ENST00000545856 SONP18583 2426 aaKnown RBP12.98□□□□□ -0.33
PRPF40A-212ENST00000545856 SNRPGP15A8MWD9 76 aa12.98□□□□□ -0.33
PRPF40A-212ENST00000545856 PGLYRP1O75594 196 aaPredicted RBP12.98□□□□□ -0.33
PRPF40A-212ENST00000545856 SAA4P35542 130 aa12.98□□□□□ -0.33
PRPF40A-212ENST00000545856 DYNLT3P51808 116 aa12.98□□□□□ -0.33
PRPF40A-212ENST00000545856 BAMBIQ13145 260 aa12.98□□□□□ -0.33
PRPF40A-212ENST00000545856 CBX3Q13185 183 aa12.98□□□□□ -0.33
PRPF40A-212ENST00000545856 KLRD1Q13241 179 aa12.98□□□□□ -0.33
PRPF40A-212ENST00000545856 FAM53AQ6NSI3 398 aaPredicted RBP12.98□□□□□ -0.33
PRPF40A-212ENST00000545856 TMED4Q7Z7H5 227 aa12.98□□□□□ -0.33
PRPF40A-212ENST00000545856 AIFM2Q9BRQ8 373 aa12.98□□□□□ -0.33
PRPF40A-212ENST00000545856 RNF150Q9ULK6 438 aa12.98□□□□□ -0.33
PRPF40A-212ENST00000545856 A0A1W2PPE3 182 aa12.97□□□□□ -0.33
PRPF40A-212ENST00000545856 M0R1X1 148 aa12.97□□□□□ -0.33
PRPF40A-212ENST00000545856 ATG12O94817 140 aa12.97□□□□□ -0.33
PRPF40A-212ENST00000545856 IGHV3-7P01780 117 aa12.97□□□□□ -0.33
PRPF40A-212ENST00000545856 APOA2P02652 100 aa12.97□□□□□ -0.33
PRPF40A-212ENST00000545856 FBP1P09467 338 aa12.97□□□□□ -0.33
PRPF40A-212ENST00000545856 OR4E1P0C645 316 aa12.97□□□□□ -0.33
PRPF40A-212ENST00000545856 RTL8BQ17RB0 113 aa12.97□□□□□ -0.33
PRPF40A-212ENST00000545856 GLDNQ6ZMI3 551 aaPredicted RBP12.97□□□□□ -0.33
PRPF40A-212ENST00000545856 CADM3Q8N126 398 aa12.97□□□□□ -0.33
PRPF40A-212ENST00000545856 OR5AN1Q8NGI8 311 aa12.97□□□□□ -0.33
PRPF40A-212ENST00000545856 IL22RA2Q969J5 263 aa12.97□□□□□ -0.33
PRPF40A-212ENST00000545856 RNF5Q99942 180 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms