RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 DEFA5Q01523 94 aa13.51□□□□□ -0.25
CLSTN3-214ENST00000542663 YIF1BQ5BJH7 314 aa13.51□□□□□ -0.25
CLSTN3-214ENST00000542663 LCN12Q6JVE5 192 aa13.51□□□□□ -0.25
CLSTN3-214ENST00000542663 TMPRSS11AQ6ZMR5 421 aa13.51□□□□□ -0.25
CLSTN3-214ENST00000542663 ZFP41Q8N8Y5 198 aa13.51□□□□□ -0.25
CLSTN3-214ENST00000542663 OR5T1Q8NG75 326 aa13.51□□□□□ -0.25
CLSTN3-214ENST00000542663 GRPEL2Q8TAA5 225 aa13.51□□□□□ -0.25
CLSTN3-214ENST00000542663 PLEKHA3Q9HB20 300 aa13.51□□□□□ -0.25
CLSTN3-214ENST00000542663 SIGLEC8Q9NYZ4 499 aa13.51□□□□□ -0.25
CLSTN3-214ENST00000542663 LOC100130705A0A1B0GUX0 176 aa13.5□□□□□ -0.25
CLSTN3-214ENST00000542663 SHISA3A0PJX4 238 aa13.5□□□□□ -0.25
CLSTN3-214ENST00000542663 H3BUA1 57 aa13.5□□□□□ -0.25
CLSTN3-214ENST00000542663 SLC22A1O15245 554 aa13.5□□□□□ -0.25
CLSTN3-214ENST00000542663 IGKV1-16P04430 117 aa13.5□□□□□ -0.25
CLSTN3-214ENST00000542663 DCKP27707 260 aa13.5□□□□□ -0.25
CLSTN3-214ENST00000542663 MECP2P51608 486 aaKnown RBP13.5□□□□□ -0.25
CLSTN3-214ENST00000542663 LINC00205P59089 165 aa13.5□□□□□ -0.25
CLSTN3-214ENST00000542663 FXYD3Q14802 87 aa13.5□□□□□ -0.25
CLSTN3-214ENST00000542663 MOGAT2Q3SYC2 334 aa13.5□□□□□ -0.25
CLSTN3-214ENST00000542663 ZNF880Q6PDB4 577 aa13.5□□□□□ -0.25
CLSTN3-214ENST00000542663 Q8N402 240 aa13.5□□□□□ -0.25
CLSTN3-214ENST00000542663 SVOPQ8N4V2 548 aa13.5□□□□□ -0.25
CLSTN3-214ENST00000542663 DRAXINQ8NBI3 349 aaPredicted RBP13.5□□□□□ -0.25
CLSTN3-214ENST00000542663 FAAP24Q9BTP7 215 aa13.5□□□□□ -0.25
CLSTN3-214ENST00000542663 ABRACLQ9P1F3 81 aa13.5□□□□□ -0.25
CLSTN3-214ENST00000542663 CLEC2DQ9UHP7 191 aa13.5□□□□□ -0.25
CLSTN3-214ENST00000542663 A0A0G2JLM5 398 aa13.49□□□□□ -0.25
CLSTN3-214ENST00000542663 SPDEFO95238 335 aa13.49□□□□□ -0.25
CLSTN3-214ENST00000542663 NAPSAO96009 420 aa13.49□□□□□ -0.25
CLSTN3-214ENST00000542663 CAPGP40121 348 aa13.49□□□□□ -0.25
CLSTN3-214ENST00000542663 DYRK1AQ13627 763 aa13.49□□□□□ -0.25
CLSTN3-214ENST00000542663 C6orf201Q7Z4U5 140 aa13.49□□□□□ -0.25
CLSTN3-214ENST00000542663 ZNF485Q8NCK3 441 aa13.49□□□□□ -0.25
CLSTN3-214ENST00000542663 SLC29A1Q99808 456 aa13.49□□□□□ -0.25
CLSTN3-214ENST00000542663 RBMY1BA6NDE4 496 aaKnown RBP13.48□□□□□ -0.25
CLSTN3-214ENST00000542663 RBMY1EA6NEQ0 496 aaKnown RBP13.48□□□□□ -0.25
CLSTN3-214ENST00000542663 ITGB1BP1O14713 200 aa13.48□□□□□ -0.25
CLSTN3-214ENST00000542663 RBMXL2O75526 392 aaKnown RBP13.48□□□□□ -0.25
CLSTN3-214ENST00000542663 RBMY1DP0C7P1 496 aaKnown RBP13.48□□□□□ -0.25
CLSTN3-214ENST00000542663 RASSF2P50749 326 aa13.48□□□□□ -0.25
CLSTN3-214ENST00000542663 RNLSQ5VYX0 342 aa13.48□□□□□ -0.25
CLSTN3-214ENST00000542663 ZNF343Q6P1L6 599 aa13.48□□□□□ -0.25
CLSTN3-214ENST00000542663 ZNF383Q8NA42 475 aa13.48□□□□□ -0.25
CLSTN3-214ENST00000542663 LINC00476Q8WZB0 136 aa13.48□□□□□ -0.25
CLSTN3-214ENST00000542663 DERL3Q96Q80 235 aa13.48□□□□□ -0.25
CLSTN3-214ENST00000542663 TSNAXQ99598 290 aaKnown RBP13.48□□□□□ -0.25
CLSTN3-214ENST00000542663 C11orf54Q9H0W9 315 aaPredicted RBP13.48□□□□□ -0.25
CLSTN3-214ENST00000542663 PEF1Q9UBV8 284 aaKnown RBP13.48□□□□□ -0.25
CLSTN3-214ENST00000542663 SLC25A17O43808 307 aa13.47□□□□□ -0.25
CLSTN3-214ENST00000542663 BRI3O95415 125 aa13.47□□□□□ -0.25
CLSTN3-214ENST00000542663 CPEP16870 476 aa13.47□□□□□ -0.25
CLSTN3-214ENST00000542663 CD81P60033 236 aa13.47□□□□□ -0.25
CLSTN3-214ENST00000542663 RPS16P62249 146 aaKnown RBP13.47□□□□□ -0.25
CLSTN3-214ENST00000542663 PJVKQ0ZLH3 352 aa13.47□□□□□ -0.25
CLSTN3-214ENST00000542663 OR10K2Q6IF99 312 aa13.47□□□□□ -0.25
CLSTN3-214ENST00000542663 TINAGL1Q9GZM7 467 aaPredicted RBP13.47□□□□□ -0.25
CLSTN3-214ENST00000542663 OR1A1Q9P1Q5 309 aa13.47□□□□□ -0.25
CLSTN3-214ENST00000542663 DIMT1Q9UNQ2 313 aaKnown RBP13.47□□□□□ -0.25
CLSTN3-214ENST00000542663 HERC2O95714 4834 aa13.47□□□□□ -0.25
CLSTN3-214ENST00000542663 CIB2O75838 187 aa13.46□□□□□ -0.25
CLSTN3-214ENST00000542663 IGLV2-23P01705 113 aa13.46□□□□□ -0.25
CLSTN3-214ENST00000542663 NKAIN3Q8N8D7 197 aa13.46□□□□□ -0.25
CLSTN3-214ENST00000542663 NEDD4LQ96PU5 975 aa13.46□□□□□ -0.25
CLSTN3-214ENST00000542663 NEURL2Q9BR09 285 aa13.46□□□□□ -0.25
CLSTN3-214ENST00000542663 UQCC2Q9BRT2 126 aa13.46□□□□□ -0.25
CLSTN3-214ENST00000542663 NICN1Q9BSH3 213 aa13.46□□□□□ -0.25
CLSTN3-214ENST00000542663 WFDC10AQ9H1F0 79 aa13.46□□□□□ -0.25
CLSTN3-214ENST00000542663 EXOSC1Q9Y3B2 195 aaKnown RBP13.46□□□□□ -0.25
CLSTN3-214ENST00000542663 KMT2AQ03164 3969 aa13.45□□□□□ -0.26
CLSTN3-214ENST00000542663 PNMA8CA0A1B0GUJ8 204 aa13.45□□□□□ -0.26
CLSTN3-214ENST00000542663 OR2A4O95047 310 aa13.45□□□□□ -0.26
CLSTN3-214ENST00000542663 CRYGBP07316 175 aa13.45□□□□□ -0.26
CLSTN3-214ENST00000542663 CD7P09564 240 aa13.45□□□□□ -0.26
CLSTN3-214ENST00000542663 AADACP22760 399 aa13.45□□□□□ -0.26
CLSTN3-214ENST00000542663 HTR2CP28335 458 aa13.45□□□□□ -0.26
CLSTN3-214ENST00000542663 RPS27AP62979 156 aaKnown RBP13.45□□□□□ -0.26
CLSTN3-214ENST00000542663 RPEL1Q2QD12 228 aa13.45□□□□□ -0.26
CLSTN3-214ENST00000542663 PDPNQ86YL7 162 aa13.45□□□□□ -0.26
CLSTN3-214ENST00000542663 DEFB125Q8N687 156 aa13.45□□□□□ -0.26
CLSTN3-214ENST00000542663 BVESQ8NE79 360 aa13.45□□□□□ -0.26
CLSTN3-214ENST00000542663 OR2K2Q8NGT1 345 aa13.45□□□□□ -0.26
CLSTN3-214ENST00000542663 SETD6Q8TBK2 473 aa13.45□□□□□ -0.26
CLSTN3-214ENST00000542663 GHRLQ9UBU3 117 aa13.45□□□□□ -0.26
CLSTN3-214ENST00000542663 ZNF785A8K8V0 405 aa13.44□□□□□ -0.26
CLSTN3-214ENST00000542663 CNIH1O95406 144 aa13.44□□□□□ -0.26
CLSTN3-214ENST00000542663 MYL12AP19105 171 aa13.44□□□□□ -0.26
CLSTN3-214ENST00000542663 CEACAM6P40199 344 aa13.44□□□□□ -0.26
CLSTN3-214ENST00000542663 CD300EQ496F6 205 aaPredicted RBP13.44□□□□□ -0.26
CLSTN3-214ENST00000542663 PTX4Q96A99 478 aa13.44□□□□□ -0.26
CLSTN3-214ENST00000542663 C9orf16Q9BUW7 83 aa13.44□□□□□ -0.26
CLSTN3-214ENST00000542663 KCNK15Q9H427 330 aa13.44□□□□□ -0.26
CLSTN3-214ENST00000542663 ATP5HO75947 161 aa13.43□□□□□ -0.26
CLSTN3-214ENST00000542663 TPPPO94811 219 aa13.43□□□□□ -0.26
CLSTN3-214ENST00000542663 UNC119Q13432 240 aa13.43□□□□□ -0.26
CLSTN3-214ENST00000542663 TATDN3Q17R31 274 aa13.43□□□□□ -0.26
CLSTN3-214ENST00000542663 MRGPRG-AS1Q2M3A8 158 aa13.43□□□□□ -0.26
CLSTN3-214ENST00000542663 MOB1BQ7L9L4 216 aa13.43□□□□□ -0.26
CLSTN3-214ENST00000542663 LAX1Q8IWV1 398 aa13.43□□□□□ -0.26
CLSTN3-214ENST00000542663 EDARADDQ8WWZ3 215 aa13.43□□□□□ -0.26
CLSTN3-214ENST00000542663 TMEM68Q96MH6 324 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 89.8 ms