RNA–Protein interactions for RNA: ENST00000527720.5

USH1C-207, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,278 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-207ENST00000527720 ATP6V1FQ16864 119 aa12.81□□□□□ -0.36
USH1C-207ENST00000527720 AKIRIN2Q53H80 203 aa12.81□□□□□ -0.36
USH1C-207ENST00000527720 ETV3LQ6ZN32 361 aa12.81□□□□□ -0.36
USH1C-207ENST00000527720 CLDND2Q8NHS1 167 aa12.81□□□□□ -0.36
USH1C-207ENST00000527720 PINX1Q96BK5 328 aaKnown RBP12.81□□□□□ -0.36
USH1C-207ENST00000527720 C14orf79Q96F83 325 aa12.81□□□□□ -0.36
USH1C-207ENST00000527720 WDR61Q9GZS3 305 aaKnown RBP12.81□□□□□ -0.36
USH1C-207ENST00000527720 DUSP13Q9UII6 198 aa12.81□□□□□ -0.36
USH1C-207ENST00000527720 JPT1Q9UK76 154 aa12.81□□□□□ -0.36
USH1C-207ENST00000527720 IGKV1D-17A0A075B6S4 117 aa12.81□□□□□ -0.36
USH1C-207ENST00000527720 ODAMA1E959 279 aa12.81□□□□□ -0.36
USH1C-207ENST00000527720 C17orf98A8MV24 154 aa12.81□□□□□ -0.36
USH1C-207ENST00000527720 TFF1P04155 84 aa12.81□□□□□ -0.36
USH1C-207ENST00000527720 EGR1P18146 543 aa12.81□□□□□ -0.36
USH1C-207ENST00000527720 BRWD1-AS2P59051 145 aa12.81□□□□□ -0.36
USH1C-207ENST00000527720 ICAM4Q14773 271 aa12.81□□□□□ -0.36
USH1C-207ENST00000527720 MSMPQ1L6U9 139 aa12.81□□□□□ -0.36
USH1C-207ENST00000527720 KRTCAP3Q53RY4 240 aa12.81□□□□□ -0.36
USH1C-207ENST00000527720 OR10G4Q8NGN3 311 aa12.81□□□□□ -0.36
USH1C-207ENST00000527720 MBD3L1Q8WWY6 194 aa12.81□□□□□ -0.36
USH1C-207ENST00000527720 CIB3Q96Q77 187 aaPredicted RBP12.81□□□□□ -0.36
USH1C-207ENST00000527720 AGMATQ9BSE5 352 aa12.81□□□□□ -0.36
USH1C-207ENST00000527720 NCOR1P1Q9H4R4 102 aa12.81□□□□□ -0.36
USH1C-207ENST00000527720 BIN3Q9NQY0 253 aa12.81□□□□□ -0.36
USH1C-207ENST00000527720 TIMM9Q9Y5J7 89 aa12.81□□□□□ -0.36
USH1C-207ENST00000527720 IGLV3-9A0A075B6K5 115 aa12.8□□□□□ -0.36
USH1C-207ENST00000527720 RPS23P62266 143 aaKnown RBP12.8□□□□□ -0.36
USH1C-207ENST00000527720 SLC38A11Q08AI6 406 aa12.8□□□□□ -0.36
USH1C-207ENST00000527720 LRP11Q86VZ4 500 aa12.8□□□□□ -0.36
USH1C-207ENST00000527720 GCSAMQ8N6F7 178 aa12.8□□□□□ -0.36
USH1C-207ENST00000527720 TPRX1Q8N7U7 411 aa12.8□□□□□ -0.36
USH1C-207ENST00000527720 RBMXL3Q8N7X1 1067 aaKnown RBP12.8□□□□□ -0.36
USH1C-207ENST00000527720 RSG1Q9BU20 258 aa12.8□□□□□ -0.36
USH1C-207ENST00000527720 MRPL37Q9BZE1 423 aaKnown RBP12.8□□□□□ -0.36
USH1C-207ENST00000527720 DSCAML1Q8TD84 2053 aa12.8□□□□□ -0.36
USH1C-207ENST00000527720 CEACAM8P31997 349 aaPredicted RBP12.79□□□□□ -0.36
USH1C-207ENST00000527720 HAGHQ16775 308 aa12.79□□□□□ -0.36
USH1C-207ENST00000527720 FAM53AQ6NSI3 398 aaPredicted RBP12.79□□□□□ -0.36
USH1C-207ENST00000527720 H2BFWTQ7Z2G1 175 aa12.79□□□□□ -0.36
USH1C-207ENST00000527720 HIST1H2BAQ96A08 127 aa12.79□□□□□ -0.36
USH1C-207ENST00000527720 MEGF10Q96KG7 1140 aa12.79□□□□□ -0.36
USH1C-207ENST00000527720 OR2V2Q96R30 315 aa12.79□□□□□ -0.36
USH1C-207ENST00000527720 SAV1Q9H4B6 383 aaPredicted RBP12.79□□□□□ -0.36
USH1C-207ENST00000527720 ESRP2Q9H6T0 727 aaKnown RBP12.79□□□□□ -0.36
USH1C-207ENST00000527720 RPRMQ9NS64 109 aa12.79□□□□□ -0.36
USH1C-207ENST00000527720 TANC2Q9HCD6 1990 aa12.79□□□□□ -0.36
USH1C-207ENST00000527720 YPEL1O60688 119 aa12.79□□□□□ -0.36
USH1C-207ENST00000527720 LHBP01229 141 aa12.79□□□□□ -0.36
USH1C-207ENST00000527720 OR2B11Q5JQS5 317 aa12.79□□□□□ -0.36
USH1C-207ENST00000527720 BTNL3Q6UXE8 466 aa12.79□□□□□ -0.36
USH1C-207ENST00000527720 CENPVQ7Z7K6 275 aaPredicted RBP12.79□□□□□ -0.36
USH1C-207ENST00000527720 TAF15Q92804 592 aaKnown RBP eCLIP12.79□□□□□ -0.36
USH1C-207ENST00000527720 YPEL2Q96QA6 119 aa12.79□□□□□ -0.36
USH1C-207ENST00000527720 OR4C12Q96R67 309 aa12.79□□□□□ -0.36
USH1C-207ENST00000527720 PSG11Q9UQ72 335 aa12.79□□□□□ -0.36
USH1C-207ENST00000527720 HCFC1P51610 2035 aa12.79□□□□□ -0.36
USH1C-207ENST00000527720 ZFHX4Q86UP3 3567 aa12.78□□□□□ -0.36
USH1C-207ENST00000527720 IGHV3-43A0A0B4J1X8 118 aa12.78□□□□□ -0.36
USH1C-207ENST00000527720 LOC102723971A0A1B0GUV8 181 aa12.78□□□□□ -0.36
USH1C-207ENST00000527720 LY86O95711 162 aa12.78□□□□□ -0.36
USH1C-207ENST00000527720 IGHV3-43DP0DP04 118 aa12.78□□□□□ -0.36
USH1C-207ENST00000527720 AKR1C3P42330 323 aa12.78□□□□□ -0.36
USH1C-207ENST00000527720 GATA4P43694 442 aa12.78□□□□□ -0.36
USH1C-207ENST00000527720 RAB5BP61020 215 aa12.78□□□□□ -0.36
USH1C-207ENST00000527720 EDDM3AQ14507 147 aa12.78□□□□□ -0.36
USH1C-207ENST00000527720 Q3ZCU0 254 aa12.78□□□□□ -0.36
USH1C-207ENST00000527720 TMEM41BQ5BJD5 291 aa12.78□□□□□ -0.36
USH1C-207ENST00000527720 RFESDQ8TAC1 157 aa12.78□□□□□ -0.36
USH1C-207ENST00000527720 C20orf24Q9BUV8 137 aa12.78□□□□□ -0.36
USH1C-207ENST00000527720 RAB9BQ9NP90 201 aa12.78□□□□□ -0.36
USH1C-207ENST00000527720 FAM90A9PA6NNJ1 464 aa12.78□□□□□ -0.36
USH1C-207ENST00000527720 LINC00473A8K010 186 aa12.78□□□□□ -0.36
USH1C-207ENST00000527720 F2RL2O00254 374 aa12.78□□□□□ -0.36
USH1C-207ENST00000527720 ST8SIA5O15466 376 aa12.78□□□□□ -0.36
USH1C-207ENST00000527720 PTAFRP25105 342 aa12.78□□□□□ -0.36
USH1C-207ENST00000527720 MORN2Q502X0 79 aa12.78□□□□□ -0.36
USH1C-207ENST00000527720 FAM57AQ8TBR7 257 aa12.78□□□□□ -0.36
USH1C-207ENST00000527720 DOCK11Q5JSL3 2073 aa12.77□□□□□ -0.36
USH1C-207ENST00000527720 MAS1LP35410 378 aa12.77□□□□□ -0.36
USH1C-207ENST00000527720 GPR12P47775 334 aa12.77□□□□□ -0.36
USH1C-207ENST00000527720 HOXA1P49639 335 aaPredicted RBP12.77□□□□□ -0.36
USH1C-207ENST00000527720 PMS2P11Q13670 270 aa12.77□□□□□ -0.36
USH1C-207ENST00000527720 ZNF787Q6DD87 383 aa12.77□□□□□ -0.36
USH1C-207ENST00000527720 RPRMLQ8N4K4 120 aa12.77□□□□□ -0.36
USH1C-207ENST00000527720 PRSS33Q8NF86 280 aa12.77□□□□□ -0.36
USH1C-207ENST00000527720 DTD1Q8TEA8 209 aa12.77□□□□□ -0.36
USH1C-207ENST00000527720 CISD1Q9NZ45 108 aaKnown RBP12.77□□□□□ -0.36
USH1C-207ENST00000527720 PUS1Q9Y606 427 aaKnown RBP eCLIP12.77□□□□□ -0.36
USH1C-207ENST00000527720 MARCH11A6NNE9 402 aa12.77□□□□□ -0.37
USH1C-207ENST00000527720 C1orf196B1AJZ1 125 aa12.77□□□□□ -0.37
USH1C-207ENST00000527720 H3BQ15 152 aa12.77□□□□□ -0.37
USH1C-207ENST00000527720 ITGB1BP1O14713 200 aa12.77□□□□□ -0.37
USH1C-207ENST00000527720 DUTP33316 252 aaKnown RBP12.77□□□□□ -0.37
USH1C-207ENST00000527720 SELENOVP59797 346 aa12.77□□□□□ -0.37
USH1C-207ENST00000527720 AARDQ4LEZ3 155 aa12.77□□□□□ -0.37
USH1C-207ENST00000527720 MOGAT3Q86VF5 341 aa12.77□□□□□ -0.37
USH1C-207ENST00000527720 DCTN5Q9BTE1 182 aa12.77□□□□□ -0.37
USH1C-207ENST00000527720 TMEM147Q9BVK8 224 aa12.77□□□□□ -0.37
USH1C-207ENST00000527720 OR6C3Q9NZP0 311 aa12.77□□□□□ -0.37
USH1C-207ENST00000527720 GNG12Q9UBI6 72 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms