RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 CIB3Q96Q77 187 aaPredicted RBP17.78■□□□□ 0.44
VPS28-205ENST00000526204 TAAR6Q96RI8 345 aa17.78■□□□□ 0.44
VPS28-205ENST00000526204 SEBOXQ9HB31 216 aaPredicted RBP17.78■□□□□ 0.44
VPS28-205ENST00000526204 ODAMA1E959 279 aa17.78■□□□□ 0.44
VPS28-205ENST00000526204 RAB29O14966 203 aa17.78■□□□□ 0.44
VPS28-205ENST00000526204 PTBP3O95758 552 aaKnown RBP17.78■□□□□ 0.44
VPS28-205ENST00000526204 COL10A1Q03692 680 aa17.78■□□□□ 0.44
VPS28-205ENST00000526204 ELOBQ15370 118 aa17.78■□□□□ 0.44
VPS28-205ENST00000526204 OR2B11Q5JQS5 317 aa17.78■□□□□ 0.44
VPS28-205ENST00000526204 UFSP2Q9NUQ7 469 aa17.78■□□□□ 0.44
VPS28-205ENST00000526204 A0A1B0GWJ7 208 aa17.77■□□□□ 0.44
VPS28-205ENST00000526204 MAP1LC3B2A6NCE7 125 aa17.77■□□□□ 0.44
VPS28-205ENST00000526204 AHRRA9YTQ3 701 aa17.77■□□□□ 0.44
VPS28-205ENST00000526204 S1PR2O95136 353 aa17.77■□□□□ 0.44
VPS28-205ENST00000526204 RBMS3Q6XE24 437 aaKnown RBP17.77■□□□□ 0.44
VPS28-205ENST00000526204 HSD17B10Q99714 261 aaKnown RBP17.77■□□□□ 0.44
VPS28-205ENST00000526204 TMEM147Q9BVK8 224 aa17.77■□□□□ 0.44
VPS28-205ENST00000526204 MRPL37Q9BZE1 423 aaKnown RBP17.77■□□□□ 0.44
VPS28-205ENST00000526204 MAP1LC3BQ9GZQ8 125 aa17.77■□□□□ 0.44
VPS28-205ENST00000526204 TMEM242Q9NWH2 141 aa17.77■□□□□ 0.44
VPS28-205ENST00000526204 C17orf98A8MV24 154 aa17.77■□□□□ 0.43
VPS28-205ENST00000526204 SPINT2O43291 252 aa17.77■□□□□ 0.43
VPS28-205ENST00000526204 WISP2O76076 250 aa17.77■□□□□ 0.43
VPS28-205ENST00000526204 ADH4P08319 380 aa17.77■□□□□ 0.43
VPS28-205ENST00000526204 NQO2P16083 231 aa17.77■□□□□ 0.43
VPS28-205ENST00000526204 H2BFWTQ7Z2G1 175 aa17.77■□□□□ 0.43
VPS28-205ENST00000526204 Q8WTZ3 238 aa17.77■□□□□ 0.43
VPS28-205ENST00000526204 CA5BP1Q8WTZ4 195 aa17.77■□□□□ 0.43
VPS28-205ENST00000526204 MSL2Q9HCI7 577 aa17.77■□□□□ 0.43
VPS28-205ENST00000526204 SLC39A9Q9NUM3 307 aa17.77■□□□□ 0.43
VPS28-205ENST00000526204 WASF3Q9UPY6 502 aa17.77■□□□□ 0.43
VPS28-205ENST00000526204 IGHV2OR16-5A0A0B4J2B6 119 aa17.76■□□□□ 0.43
VPS28-205ENST00000526204 FGF8P55075 233 aaPredicted RBP17.76■□□□□ 0.43
VPS28-205ENST00000526204 BRWD1-AS2P59051 145 aa17.76■□□□□ 0.43
VPS28-205ENST00000526204 HTD2P86397 168 aa17.76■□□□□ 0.43
VPS28-205ENST00000526204 P2RY6Q15077 328 aa17.76■□□□□ 0.43
VPS28-205ENST00000526204 SSX7Q7RTT5 188 aa17.76■□□□□ 0.43
VPS28-205ENST00000526204 FAM169BQ8N8A8 192 aa17.76■□□□□ 0.43
VPS28-205ENST00000526204 DTD1Q8TEA8 209 aa17.76■□□□□ 0.43
VPS28-205ENST00000526204 CELSR3Q9NYQ7 3312 aa17.76■□□□□ 0.43
VPS28-205ENST00000526204 MBP02144 154 aa17.75■□□□□ 0.43
VPS28-205ENST00000526204 ELLP55199 621 aaPredicted RBP17.75■□□□□ 0.43
VPS28-205ENST00000526204 OR10P1Q8NGE3 313 aa17.75■□□□□ 0.43
VPS28-205ENST00000526204 OR13A1Q8NGR1 328 aa17.75■□□□□ 0.43
VPS28-205ENST00000526204 ASCL3Q9NQ33 180 aa17.75■□□□□ 0.43
VPS28-205ENST00000526204 FZR1Q9UM11 496 aa17.75■□□□□ 0.43
VPS28-205ENST00000526204 OR5H1A6NKK0 313 aa17.75■□□□□ 0.43
VPS28-205ENST00000526204 SSTR5P35346 364 aa17.75■□□□□ 0.43
VPS28-205ENST00000526204 FOXF2Q12947 444 aa17.75■□□□□ 0.43
VPS28-205ENST00000526204 SRSF6Q13247 344 aaKnown RBP17.75■□□□□ 0.43
VPS28-205ENST00000526204 LHX4Q969G2 390 aa17.75■□□□□ 0.43
VPS28-205ENST00000526204 ZNF71Q9NQZ8 489 aaPredicted RBP17.75■□□□□ 0.43
VPS28-205ENST00000526204 CLN8Q9UBY8 286 aa17.75■□□□□ 0.43
VPS28-205ENST00000526204 PCNX2A6NKB5 2137 aa17.74■□□□□ 0.43
VPS28-205ENST00000526204 IGHV1-18A0A0C4DH31 117 aa17.74■□□□□ 0.43
VPS28-205ENST00000526204 EIF2S3P41091 472 aaKnown RBP17.74■□□□□ 0.43
VPS28-205ENST00000526204 KIAA0141Q14154 515 aaPredicted RBP17.74■□□□□ 0.43
VPS28-205ENST00000526204 FAM53AQ6NSI3 398 aaPredicted RBP17.74■□□□□ 0.43
VPS28-205ENST00000526204 BTNL3Q6UXE8 466 aa17.74■□□□□ 0.43
VPS28-205ENST00000526204 FAM216AQ8WUB2 273 aa17.74■□□□□ 0.43
VPS28-205ENST00000526204 PROCRQ9UNN8 238 aa17.74■□□□□ 0.43
VPS28-205ENST00000526204 CEBPZOSA8MTT3 80 aa17.74■□□□□ 0.43
VPS28-205ENST00000526204 ZNF737O75373 536 aa17.74■□□□□ 0.43
VPS28-205ENST00000526204 FTH1P19P0C7X4 201 aa17.74■□□□□ 0.43
VPS28-205ENST00000526204 ERVFRD-1P60508 538 aa17.74■□□□□ 0.43
VPS28-205ENST00000526204 ZNF343Q6P1L6 599 aa17.74■□□□□ 0.43
VPS28-205ENST00000526204 RPP25LQ8N5L8 163 aaKnown RBP17.74■□□□□ 0.43
VPS28-205ENST00000526204 ZNF610Q8N9Z0 462 aa17.74■□□□□ 0.43
VPS28-205ENST00000526204 LRRC29Q8WV35 223 aa17.74■□□□□ 0.43
VPS28-205ENST00000526204 EDARADDQ8WWZ3 215 aa17.74■□□□□ 0.43
VPS28-205ENST00000526204 METRNQ9UJH8 293 aa17.74■□□□□ 0.43
VPS28-205ENST00000526204 TNFSF13O75888 250 aa17.73■□□□□ 0.43
VPS28-205ENST00000526204 CYB5R3P00387 301 aaPredicted RBP17.73■□□□□ 0.43
VPS28-205ENST00000526204 GZMHP20718 246 aa17.73■□□□□ 0.43
VPS28-205ENST00000526204 PRDX2P32119 198 aa17.73■□□□□ 0.43
VPS28-205ENST00000526204 HOXA4Q00056 320 aaPredicted RBP17.73■□□□□ 0.43
VPS28-205ENST00000526204 ZNF251Q9BRH9 671 aa17.73■□□□□ 0.43
VPS28-205ENST00000526204 SDF2L1Q9HCN8 221 aa17.73■□□□□ 0.43
VPS28-205ENST00000526204 URGCP-MRPS24S4R325 110 aa17.73■□□□□ 0.43
VPS28-205ENST00000526204 PMS2P5A8MQ11 134 aa17.72■□□□□ 0.43
VPS28-205ENST00000526204 C15orf65H3BRN8 121 aa17.72■□□□□ 0.43
VPS28-205ENST00000526204 LY86O95711 162 aa17.72■□□□□ 0.43
VPS28-205ENST00000526204 CXCL1P09341 107 aa17.72■□□□□ 0.43
VPS28-205ENST00000526204 BHLHA15Q7RTS1 189 aaPredicted RBP17.72■□□□□ 0.43
VPS28-205ENST00000526204 FAM90A1Q86YD7 464 aa17.72■□□□□ 0.43
VPS28-205ENST00000526204 TPRX1Q8N7U7 411 aa17.72■□□□□ 0.43
VPS28-205ENST00000526204 STARD4Q96DR4 205 aa17.72■□□□□ 0.43
VPS28-205ENST00000526204 AGMATQ9BSE5 352 aa17.72■□□□□ 0.43
VPS28-205ENST00000526204 PSG11Q9UQ72 335 aa17.72■□□□□ 0.43
VPS28-205ENST00000526204 CLDN34H7C241 214 aa17.72■□□□□ 0.43
VPS28-205ENST00000526204 ZG16O60844 167 aa17.72■□□□□ 0.43
VPS28-205ENST00000526204 RBMXL2O75526 392 aaKnown RBP17.72■□□□□ 0.43
VPS28-205ENST00000526204 CGAP01215 116 aa17.72■□□□□ 0.43
VPS28-205ENST00000526204 TFF1P04155 84 aa17.72■□□□□ 0.43
VPS28-205ENST00000526204 CD55P08174 381 aa17.72■□□□□ 0.43
VPS28-205ENST00000526204 ZNF674Q2M3X9 581 aa17.72■□□□□ 0.43
VPS28-205ENST00000526204 Q3ZCU0 254 aa17.72■□□□□ 0.43
VPS28-205ENST00000526204 FAM180AQ6UWF9 173 aa17.72■□□□□ 0.43
VPS28-205ENST00000526204 CD177Q8N6Q3 437 aa17.72■□□□□ 0.43
VPS28-205ENST00000526204 DEFB124Q8NES8 71 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms