RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 NRN1Q9NPD7 142 aa9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 PGPEP1Q9NXJ5 209 aa9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 SERGEFQ9UGK8 458 aa9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 KCNMB2Q9Y691 235 aa9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 MKRN2OSH3BPM6 223 aa9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 F2RL2O00254 374 aa9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 MGST3O14880 152 aa9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 SLC25A20O43772 301 aa9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 GLULP15104 373 aa9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 GCHFRP30047 84 aa9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 OTX1P32242 354 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 ZNF658BQ4V348 819 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 MORN3Q6PF18 240 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 ATOH7Q8N100 152 aa9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 AQP3Q92482 292 aa9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 PRSS27Q9BQR3 290 aa9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 OVOL2Q9BRP0 275 aa9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 IL36RNQ9UBH0 155 aa9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 IZUMO1RA6ND01 250 aa9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 PPBPP02775 128 aa9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 CBLN1P23435 193 aa9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 TMEM170BQ5T4T1 132 aa9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 KCPQ6ZWJ8 1503 aa9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 SAXO1Q8IYX7 474 aa9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 ZNF645Q8N7E2 425 aa9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 SDF2L1Q9HCN8 221 aa9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 A0A1W2PP11 408 aa9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 IFNL4K9M1U5 179 aa9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 HOXC4P09017 264 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 ESDP10768 282 aa9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 FGF12P61328 243 aa9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 DDB2Q92466 427 aa9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 ELSPBP1Q96BH3 223 aa9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 CHCHD1Q96BP2 118 aaKnown RBP9.74□□□□□ -0.85
LIMCH1-217ENST00000512946 ZNF815PA8K554 130 aa9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 C1QL1O75973 258 aa9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 ZP4Q12836 540 aa9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 TBR1Q16650 682 aa9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 MDP1Q86V88 176 aa9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 GPR146Q96CH1 333 aa9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 TNFRSF19Q9NS68 423 aa9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 PEAK1Q9H792 1746 aa9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 A0A1B0GTL3 188 aa9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 LIPT2A6NK58 231 aa9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 PLNP26678 52 aa9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 ASIPP42127 132 aa9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 RHOGP84095 191 aa9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 OR11H4Q8NGC9 324 aa9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 LPAR2Q9HBW0 351 aa9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 CRYBB3P26998 211 aa9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 STARD6P59095 220 aa9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 SUMO2P61956 95 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 CACNG7P62955 275 aa9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 UBE2V1Q13404 147 aa9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 KIAA1644Q3SXP7 199 aa9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 C1orf194Q5T5A4 169 aa9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 LDLRAD1Q5T700 205 aa9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 WNT10AQ9GZT5 417 aa9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 CRISPLD2Q9H0B8 497 aa9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 G6PC2Q9NQR9 355 aa9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 CEACAM5P06731 702 aa9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 IFI6P09912 130 aa9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 ARL14EPLP0DKL9 152 aa9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 HMGA1P17096 107 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 MGAT2Q10469 447 aa9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 CENPWQ5EE01 88 aa9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 ORMDL3Q8N138 153 aa9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 TMUB1Q9BVT8 246 aa9.73□□□□□ -0.85
LIMCH1-217ENST00000512946 K7ESM1 405 aa9.72□□□□□ -0.85
LIMCH1-217ENST00000512946 K7N7A8 449 aa9.72□□□□□ -0.85
LIMCH1-217ENST00000512946 LGALS1P09382 135 aaKnown RBP9.72□□□□□ -0.85
LIMCH1-217ENST00000512946 ERVK11-1P61568 191 aa9.72□□□□□ -0.85
LIMCH1-217ENST00000512946 IL11RAQ14626 422 aa9.72□□□□□ -0.85
LIMCH1-217ENST00000512946 ACSF3Q4G176 576 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-217ENST00000512946 SAMD5Q5TGI4 173 aa9.72□□□□□ -0.85
LIMCH1-217ENST00000512946 ZNF562Q6V9R5 426 aa9.72□□□□□ -0.85
LIMCH1-217ENST00000512946 CIARTQ8N365 385 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-217ENST00000512946 SCGB3A1Q96QR1 104 aa9.72□□□□□ -0.85
LIMCH1-217ENST00000512946 APOHP02749 345 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-217ENST00000512946 SARGQ9BW04 601 aa9.72□□□□□ -0.85
LIMCH1-217ENST00000512946 SLC25A15Q9Y619 301 aa9.72□□□□□ -0.85
LIMCH1-217ENST00000512946 TRBV7-9A0A0J9YWB2 115 aa9.72□□□□□ -0.85
LIMCH1-217ENST00000512946 MARCH11A6NNE9 402 aa9.72□□□□□ -0.85
LIMCH1-217ENST00000512946 CNTFRP26992 372 aa9.72□□□□□ -0.85
LIMCH1-217ENST00000512946 RPL8P62917 257 aaKnown RBP9.72□□□□□ -0.85
LIMCH1-217ENST00000512946 INO80CQ6PI98 192 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-217ENST00000512946 SELENOHQ8IZQ5 122 aaKnown RBP9.72□□□□□ -0.85
LIMCH1-217ENST00000512946 PLPPR2Q96GM1 343 aa9.72□□□□□ -0.85
LIMCH1-217ENST00000512946 C16orf92Q96LL3 132 aa9.72□□□□□ -0.85
LIMCH1-217ENST00000512946 ADRA2AP08913 450 aa9.72□□□□□ -0.85
LIMCH1-217ENST00000512946 COX7A1P24310 79 aa9.72□□□□□ -0.85
LIMCH1-217ENST00000512946 MFAP4P55083 255 aa9.72□□□□□ -0.85
LIMCH1-217ENST00000512946 PAX2Q02962 417 aa9.72□□□□□ -0.85
LIMCH1-217ENST00000512946 ZIC1Q15915 447 aa9.72□□□□□ -0.85
LIMCH1-217ENST00000512946 MBNL2Q5VZF2 373 aaKnown RBP9.72□□□□□ -0.85
LIMCH1-217ENST00000512946 ITGB1BP1O14713 200 aa9.71□□□□□ -0.85
LIMCH1-217ENST00000512946 H2BFSP57053 126 aa9.71□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms