RNA–Protein interactions for RNA: ENST00000511843.5

RNF4-215, Transcript of ring finger protein 4, human

TSL 5

Gene RNF4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-215	ENST00000511843	C5orf30	Q96GV9	206 aa		10.42	□□□□□ -0.74
RNF4-215	ENST00000511843	KCTD7	Q96MP8	289 aa		10.42	□□□□□ -0.74
RNF4-215	ENST00000511843	FBXL15	Q9H469	300 aa		10.42	□□□□□ -0.74
RNF4-215	ENST00000511843	PARP11	Q9NR21	331 aa		10.42	□□□□□ -0.74
RNF4-215	ENST00000511843	ZNF221	Q9UK13	617 aa		10.42	□□□□□ -0.74
RNF4-215	ENST00000511843	IGHV7-81	A0A0B4J1V7	117 aa		10.41	□□□□□ -0.74
RNF4-215	ENST00000511843		M0R1X1	148 aa		10.41	□□□□□ -0.74
RNF4-215	ENST00000511843	OR8U9	P0C7N5	309 aa		10.41	□□□□□ -0.74
RNF4-215	ENST00000511843	VDAC1	P21796	283 aa		10.41	□□□□□ -0.74
RNF4-215	ENST00000511843	TALDO1	P37837	337 aa		10.41	□□□□□ -0.74
RNF4-215	ENST00000511843	NDP	Q00604	133 aa		10.41	□□□□□ -0.74
RNF4-215	ENST00000511843	KIR2DS1	Q14954	304 aa		10.41	□□□□□ -0.74
RNF4-215	ENST00000511843	PNLIPRP3	Q17RR3	467 aa		10.41	□□□□□ -0.74
RNF4-215	ENST00000511843	DEFB136	Q30KP8	78 aa		10.41	□□□□□ -0.74
RNF4-215	ENST00000511843	CDNF	Q49AH0	187 aa		10.41	□□□□□ -0.74
RNF4-215	ENST00000511843	FOXB2	Q5VYV0	432 aa		10.41	□□□□□ -0.74
RNF4-215	ENST00000511843	TEX38	Q6PEX7	206 aa		10.41	□□□□□ -0.74
RNF4-215	ENST00000511843	MRPL41	Q8IXM3	137 aa	Known RBP	10.41	□□□□□ -0.74
RNF4-215	ENST00000511843	LINC00482	Q8N8I6	264 aa		10.41	□□□□□ -0.74
RNF4-215	ENST00000511843	ZNF383	Q8NA42	475 aa		10.41	□□□□□ -0.74
RNF4-215	ENST00000511843	WFDC9	Q8NEX5	89 aa		10.41	□□□□□ -0.74
RNF4-215	ENST00000511843	OR8U1	Q8NH10	309 aa		10.41	□□□□□ -0.74
RNF4-215	ENST00000511843	OR10J5	Q8NHC4	309 aa		10.41	□□□□□ -0.74
RNF4-215	ENST00000511843	NUDCD2	Q8WVJ2	157 aa		10.41	□□□□□ -0.74
RNF4-215	ENST00000511843	PTX4	Q96A99	478 aa		10.41	□□□□□ -0.74
RNF4-215	ENST00000511843	CABLES2	Q9BTV7	478 aa		10.41	□□□□□ -0.74
RNF4-215	ENST00000511843	OR2D2	Q9H210	308 aa		10.41	□□□□□ -0.74
RNF4-215	ENST00000511843	KIAA1456	Q9P272	454 aa		10.41	□□□□□ -0.74
RNF4-215	ENST00000511843	WASHC3	Q9Y3C0	194 aa		10.41	□□□□□ -0.74
RNF4-215	ENST00000511843	FBXO7	Q9Y3I1	522 aa		10.41	□□□□□ -0.74
RNF4-215	ENST00000511843	TRBV6-7	A0A0A0MS04	114 aa		10.4	□□□□□ -0.74
RNF4-215	ENST00000511843	TMEM235	A6NFC5	223 aa		10.4	□□□□□ -0.74
RNF4-215	ENST00000511843	OR5H14	A6NHG9	310 aa		10.4	□□□□□ -0.74
RNF4-215	ENST00000511843		J3QRK9	145 aa		10.4	□□□□□ -0.74
RNF4-215	ENST00000511843	FCN1	O00602	326 aa		10.4	□□□□□ -0.74
RNF4-215	ENST00000511843	RRP9	O43818	475 aa	Known RBP	10.4	□□□□□ -0.74
RNF4-215	ENST00000511843	NDUFA3	O95167	84 aa		10.4	□□□□□ -0.74
RNF4-215	ENST00000511843	HLA-DRB1	P01911	266 aa		10.4	□□□□□ -0.74
RNF4-215	ENST00000511843	IGKV1-16	P04430	117 aa		10.4	□□□□□ -0.74
RNF4-215	ENST00000511843	IGF1	P05019	195 aa		10.4	□□□□□ -0.74
RNF4-215	ENST00000511843	GSTP1	P09211	210 aa	Known RBP	10.4	□□□□□ -0.74
RNF4-215	ENST00000511843	THBS3	P49746	956 aa		10.4	□□□□□ -0.74
RNF4-215	ENST00000511843	PLGLA	Q15195	96 aa		10.4	□□□□□ -0.74
RNF4-215	ENST00000511843	CXorf66	Q5JRM2	361 aa	Predicted RBP	10.4	□□□□□ -0.74
RNF4-215	ENST00000511843	IDNK	Q5T6J7	187 aa		10.4	□□□□□ -0.74
RNF4-215	ENST00000511843	ZNF695	Q8IW36	515 aa		10.4	□□□□□ -0.74
RNF4-215	ENST00000511843	COMMD1	Q8N668	190 aa		10.4	□□□□□ -0.74
RNF4-215	ENST00000511843	NPB	Q8NG41	125 aa		10.4	□□□□□ -0.74
RNF4-215	ENST00000511843	OR5AN1	Q8NGI8	311 aa		10.4	□□□□□ -0.74
RNF4-215	ENST00000511843	SLC25A38	Q96DW6	304 aa		10.4	□□□□□ -0.74
RNF4-215	ENST00000511843	RAX2	Q96IS3	184 aa		10.4	□□□□□ -0.74
RNF4-215	ENST00000511843	CLCC1	Q96S66	551 aa		10.4	□□□□□ -0.74
RNF4-215	ENST00000511843	ST6GALNAC5	Q9BVH7	336 aa		10.4	□□□□□ -0.74
RNF4-215	ENST00000511843	OR51J1	Q9H342	316 aa		10.4	□□□□□ -0.74
RNF4-215	ENST00000511843	TPSG1	Q9NRR2	321 aa		10.4	□□□□□ -0.74
RNF4-215	ENST00000511843	RHBDL2	Q9NX52	303 aa		10.4	□□□□□ -0.74
RNF4-215	ENST00000511843	GAB2	Q9UQC2	676 aa		10.4	□□□□□ -0.74
RNF4-215	ENST00000511843	A3GALT2	U3KPV4	340 aa		10.4	□□□□□ -0.74
RNF4-215	ENST00000511843	RRH	O14718	337 aa		10.39	□□□□□ -0.75
RNF4-215	ENST00000511843	MC5R	P33032	325 aa		10.39	□□□□□ -0.75
RNF4-215	ENST00000511843	SERPINB10	P48595	397 aa		10.39	□□□□□ -0.75
RNF4-215	ENST00000511843	RAB25	P57735	213 aa		10.39	□□□□□ -0.75
RNF4-215	ENST00000511843	LSM3	P62310	102 aa	Known RBP	10.39	□□□□□ -0.75
RNF4-215	ENST00000511843	FOXE3	Q13461	319 aa		10.39	□□□□□ -0.75
RNF4-215	ENST00000511843	LIN54	Q6MZP7	749 aa		10.39	□□□□□ -0.75
RNF4-215	ENST00000511843	CASTOR1	Q8WTX7	329 aa		10.39	□□□□□ -0.75
RNF4-215	ENST00000511843	GINS4	Q9BRT9	223 aa		10.39	□□□□□ -0.75
RNF4-215	ENST00000511843	KLK15	Q9H2R5	256 aa		10.39	□□□□□ -0.75
RNF4-215	ENST00000511843	ZFP57	Q9NU63	452 aa		10.39	□□□□□ -0.75
RNF4-215	ENST00000511843	AURKAIP1	Q9NWT8	199 aa	Predicted RBP	10.39	□□□□□ -0.75
RNF4-215	ENST00000511843	TRAV41	A0A0B4J266	112 aa		10.38	□□□□□ -0.75
RNF4-215	ENST00000511843	SSX5	O60225	188 aa		10.38	□□□□□ -0.75
RNF4-215	ENST00000511843	IGHG4	P01861	327 aa		10.38	□□□□□ -0.75
RNF4-215	ENST00000511843	TFAP2A	P05549	437 aa		10.38	□□□□□ -0.75
RNF4-215	ENST00000511843	PPIF	P30405	207 aa	Known RBP	10.38	□□□□□ -0.75
RNF4-215	ENST00000511843	HOXD3	P31249	432 aa	Predicted RBP	10.38	□□□□□ -0.75
RNF4-215	ENST00000511843	PSG5	Q15238	335 aa		10.38	□□□□□ -0.75
RNF4-215	ENST00000511843	ECSCR	Q19T08	205 aa		10.38	□□□□□ -0.75
RNF4-215	ENST00000511843	ZNF260	Q3ZCT1	412 aa		10.38	□□□□□ -0.75
RNF4-215	ENST00000511843	HACD4	Q5VWC8	232 aa		10.38	□□□□□ -0.75
RNF4-215	ENST00000511843	H1FOO	Q8IZA3	346 aa	Predicted RBP	10.38	□□□□□ -0.75
RNF4-215	ENST00000511843	TSPAN14	Q8NG11	270 aa		10.38	□□□□□ -0.75
RNF4-215	ENST00000511843	ABHD5	Q8WTS1	349 aa		10.38	□□□□□ -0.75
RNF4-215	ENST00000511843	OR5B12	Q96R08	314 aa		10.38	□□□□□ -0.75
RNF4-215	ENST00000511843	P2RX4	Q99571	388 aa		10.38	□□□□□ -0.75
RNF4-215	ENST00000511843	FAM103A1	Q9BTL3	118 aa	Known RBP	10.38	□□□□□ -0.75
RNF4-215	ENST00000511843	GON7	Q9BXV9	100 aa		10.38	□□□□□ -0.75
RNF4-215	ENST00000511843	TOLLIP	Q9H0E2	274 aa		10.38	□□□□□ -0.75
RNF4-215	ENST00000511843	EXOSC5	Q9NQT4	235 aa	Known RBP eCLIP	10.38	□□□□□ -0.75
RNF4-215	ENST00000511843	SLC35D1	Q9NTN3	355 aa		10.38	□□□□□ -0.75
RNF4-215	ENST00000511843	SDHAF2	Q9NX18	166 aa		10.38	□□□□□ -0.75
RNF4-215	ENST00000511843	METTL1	Q9UBP6	276 aa	Known RBP	10.38	□□□□□ -0.75
RNF4-215	ENST00000511843	RBM7	Q9Y580	266 aa	Known RBP	10.38	□□□□□ -0.75
RNF4-215	ENST00000511843	CCL24	O00175	119 aa		10.37	□□□□□ -0.75
RNF4-215	ENST00000511843	SLC25A17	O43808	307 aa		10.37	□□□□□ -0.75
RNF4-215	ENST00000511843	TNFAIP8	O95379	198 aa		10.37	□□□□□ -0.75
RNF4-215	ENST00000511843	APOA2	P02652	100 aa		10.37	□□□□□ -0.75
RNF4-215	ENST00000511843	FCER2	P06734	321 aa		10.37	□□□□□ -0.75
RNF4-215	ENST00000511843	ELANE	P08246	267 aa		10.37	□□□□□ -0.75
RNF4-215	ENST00000511843	PTHLH	P12272	177 aa		10.37	□□□□□ -0.75

Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms