RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 DEFB127Q9H1M4 99 aa13.56□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 SVILO95425 2214 aa13.56□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 CXorf65A6NEN9 183 aa13.56□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 MKRN2OSH3BPM6 223 aa13.56□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 RPS10P46783 165 aaKnown RBP13.56□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 ERVFRD-1P60508 538 aa13.56□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 SLC35E3Q7Z769 313 aa13.56□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 MBNL3Q9NUK0 354 aaKnown RBP13.56□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 GAR1Q9NY12 217 aaKnown RBP13.56□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 TRAPPC2LQ9UL33 140 aa13.56□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 KLF13Q9Y2Y9 288 aaPredicted RBP13.56□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 WIPI2Q9Y4P8 454 aa13.56□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 TLN1Q9Y490 2541 aaKnown RBP13.55□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 ALKBH6Q3KRA9 238 aa13.55□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 NCMAPQ5T1S8 102 aa13.55□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 FAM90A2PQ658T7 463 aa13.55□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 SLC25A24Q6NUK1 477 aa13.55□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.55□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 MBD3L1Q8WWY6 194 aa13.55□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 NANOS1Q8WY41 292 aaKnown RBP13.55□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 NIPSNAP3BQ9BS92 247 aa13.55□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 GNG13Q9P2W3 67 aa13.55□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 SPRR3Q9UBC9 169 aa13.55□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 KLRC4-KLRK1H3BQV0 150 aa13.55□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 SMPD2O60906 423 aa13.55□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 PGA5P0DJD9 388 aa13.55□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 GLIPR1P48060 266 aa13.55□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 ERVS71-1P61550 626 aa13.55□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 LRRC75BQ2VPJ9 315 aa13.55□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 KIAA2026Q5HYC2 2103 aa13.55□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 RNFT1Q5M7Z0 435 aa13.55□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 DRAM1Q8N682 238 aa13.55□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 SCGB1C1Q8TD33 95 aa13.55□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 PSMG3Q9BT73 122 aaPredicted RBP13.55□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 OR2J1Q9GZK6 312 aa13.55□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 CISD1Q9NZ45 108 aaKnown RBP13.55□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 ZFYVE26Q68DK2 2539 aa13.54□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 CHD3Q12873 2000 aaKnown RBP13.54□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 USP24Q9UPU5 2620 aa13.54□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 ZNF16P17020 682 aaPredicted RBP13.54□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 CD200P41217 278 aa13.54□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 ZNF146Q15072 292 aa13.54□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 TBC1D28Q2M2D7 210 aa13.54□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 ZNF665Q9H7R5 613 aa13.54□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 SIRT7Q9NRC8 400 aa13.54□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 LIN7CQ9NUP9 197 aaKnown RBP13.54□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 KCNS2Q9ULS6 477 aa13.54□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 CDIPTO14735 213 aa13.54□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 PPP1CBP62140 327 aa13.54□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 KIAA0141Q14154 515 aaPredicted RBP13.54□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 HNF4GQ14541 408 aa13.54□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 LCN15Q6UWW0 184 aa13.54□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 Q8IYB0 196 aa13.54□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 OR14J1Q9UGF5 321 aa13.54□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 RBM7Q9Y580 266 aaKnown RBP13.54□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 GTF3C1Q12789 2109 aa13.53□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 TGIF2-C20orf24A0A0A6YYL0 155 aa13.53□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 IGHV3-64DA0A0J9YX35 117 aa13.53□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 WDR1O75083 606 aa13.53□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 BCL2P10415 239 aa13.53□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 DEFB109BQ30KR1 87 aa13.53□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 ZNF787Q6DD87 383 aa13.53□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 POLDIP2Q9Y2S7 368 aa13.53□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 URGCP-MRPS24S4R325 110 aa13.53□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 RP1L1Q8IWN7 2480 aaPredicted RBP13.53□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 SPTA1P02549 2419 aa13.53□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 IFITM10A6NMD0 228 aa13.52□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 TNFRSF9Q07011 255 aa13.52□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 SPACA3Q8IXA5 215 aa13.52□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 FGFRL1Q8N441 504 aa13.52□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 BEND2Q8NDZ0 799 aa13.52□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 R3HDM4Q96D70 268 aa13.52□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 RCC1LQ96I51 464 aaKnown RBP13.52□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 OR4C12Q96R67 309 aa13.52□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 WDR61Q9GZS3 305 aaKnown RBP13.52□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 ZFP92A6NM28 416 aa13.52□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 J3QW42 95 aa13.52□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 YIF1AO95070 293 aa13.52□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 NXPH2O95156 264 aa13.52□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 FGF8P55075 233 aaPredicted RBP13.52□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 RAB11AP62491 216 aa13.52□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 ACSF3Q4G176 576 aaPredicted RBP13.52□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 AARDQ4LEZ3 155 aa13.52□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 ZNF766Q5HY98 468 aa13.52□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 C5orf30Q96GV9 206 aa13.52□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 PARD6GQ9BYG4 376 aaPredicted RBP13.52□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 TRGV5A0A0B4J1U4 118 aa13.51□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 SH2D1BO14796 132 aa13.51□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 SELEP16581 610 aa13.51□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 CEBPDP49716 269 aaPredicted RBP13.51□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 SERF2P84101 59 aa13.51□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 SPANXN5Q5MJ07 72 aa13.51□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 FAM53AQ6NSI3 398 aaPredicted RBP13.51□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 IGF2-ASQ6U949 168 aa13.51□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 SLC25A40Q8TBP6 338 aa13.51□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 RNF150Q9ULK6 438 aa13.51□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 DIDO1Q9BTC0 2240 aaKnown RBP13.51□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 PSPNO60542 156 aa13.51□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 IGHV1-2P23083 117 aa13.51□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 CD82P27701 267 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms