RNA–Protein interactions for RNA: ENST00000496298.5

USP40-217, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 665 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-217ENST00000496298 OR8U1Q8NH10 309 aa15.15■□□□□ 0.02
USP40-217ENST00000496298 KIAA1456Q9P272 454 aa15.15■□□□□ 0.02
USP40-217ENST00000496298 K7EIL1 84 aa15.14■□□□□ 0.01
USP40-217ENST00000496298 MFNGO00587 321 aa15.14■□□□□ 0.01
USP40-217ENST00000496298 RRHO14718 337 aa15.14■□□□□ 0.01
USP40-217ENST00000496298 ATP6V0E1O15342 81 aa15.14■□□□□ 0.01
USP40-217ENST00000496298 DIRAS3O95661 229 aa15.14■□□□□ 0.01
USP40-217ENST00000496298 CD3GP09693 182 aa15.14■□□□□ 0.01
USP40-217ENST00000496298 SERPINB10P48595 397 aa15.14■□□□□ 0.01
USP40-217ENST00000496298 CRIP2P52943 208 aaPredicted RBP15.14■□□□□ 0.01
USP40-217ENST00000496298 C19orf54Q5BKX5 351 aa15.14■□□□□ 0.01
USP40-217ENST00000496298 C22orf42Q6IC83 251 aa15.14■□□□□ 0.01
USP40-217ENST00000496298 GLDNQ6ZMI3 551 aaPredicted RBP15.14■□□□□ 0.01
USP40-217ENST00000496298 MINDY2Q8NBR6 621 aa15.14■□□□□ 0.01
USP40-217ENST00000496298 FCGR1BQ92637 280 aa15.14■□□□□ 0.01
USP40-217ENST00000496298 Q9H521 79 aa15.14■□□□□ 0.01
USP40-217ENST00000496298 WASHC3Q9Y3C0 194 aa15.14■□□□□ 0.01
USP40-217ENST00000496298 G3V318 75 aa15.13■□□□□ 0.01
USP40-217ENST00000496298 FCGR3AP08637 254 aa15.13■□□□□ 0.01
USP40-217ENST00000496298 ZNF660Q6AZW8 331 aaPredicted RBP15.13■□□□□ 0.01
USP40-217ENST00000496298 ZNF436-AS1Q8NC38 126 aaPredicted RBP15.13■□□□□ 0.01
USP40-217ENST00000496298 C4orf3Q8WVX3 66 aa15.13■□□□□ 0.01
USP40-217ENST00000496298 UBE2E2Q96LR5 201 aa15.13■□□□□ 0.01
USP40-217ENST00000496298 DUX3Q96PT4 197 aa15.13■□□□□ 0.01
USP40-217ENST00000496298 CABLES2Q9BTV7 478 aa15.13■□□□□ 0.01
USP40-217ENST00000496298 RDH8Q9NYR8 311 aa15.13■□□□□ 0.01
USP40-217ENST00000496298 RNF150Q9ULK6 438 aa15.13■□□□□ 0.01
USP40-217ENST00000496298 GAB2Q9UQC2 676 aa15.13■□□□□ 0.01
USP40-217ENST00000496298 WSB1Q9Y6I7 421 aa15.13■□□□□ 0.01
USP40-217ENST00000496298 TRAV41A0A0B4J266 112 aa15.12■□□□□ 0.01
USP40-217ENST00000496298 METTL21EPA6NDL7 271 aa15.12■□□□□ 0.01
USP40-217ENST00000496298 FABP7O15540 132 aa15.12■□□□□ 0.01
USP40-217ENST00000496298 HIST1H1DP16402 221 aaKnown RBP15.12■□□□□ 0.01
USP40-217ENST00000496298 GADD45AP24522 165 aa15.12■□□□□ 0.01
USP40-217ENST00000496298 MRPS15P82914 257 aaKnown RBP15.12■□□□□ 0.01
USP40-217ENST00000496298 FHL3Q13643 280 aa15.12■□□□□ 0.01
USP40-217ENST00000496298 SRSF7Q16629 238 aaKnown RBP eCLIP15.12■□□□□ 0.01
USP40-217ENST00000496298 KLK15Q9H2R5 256 aa15.12■□□□□ 0.01
USP40-217ENST00000496298 FBXL15Q9H469 300 aa15.12■□□□□ 0.01
USP40-217ENST00000496298 PARP11Q9NR21 331 aa15.12■□□□□ 0.01
USP40-217ENST00000496298 TXNL4BQ9NX01 149 aaKnown RBP15.12■□□□□ 0.01
USP40-217ENST00000496298 ZNF221Q9UK13 617 aa15.12■□□□□ 0.01
USP40-217ENST00000496298 TRBV6-7A0A0A0MS04 114 aa15.11■□□□□ 0.01
USP40-217ENST00000496298 A0A0B4J203 849 aa15.11■□□□□ 0.01
USP40-217ENST00000496298 WI2-2373I1.2A0A1W2PRP0 233 aa15.11■□□□□ 0.01
USP40-217ENST00000496298 GSTP1P09211 210 aaKnown RBP15.11■□□□□ 0.01
USP40-217ENST00000496298 GNB3P16520 340 aa15.11■□□□□ 0.01
USP40-217ENST00000496298 HOXD3P31249 432 aaPredicted RBP15.11■□□□□ 0.01
USP40-217ENST00000496298 CX3CL1P78423 397 aa15.11■□□□□ 0.01
USP40-217ENST00000496298 NDPQ00604 133 aa15.11■□□□□ 0.01
USP40-217ENST00000496298 RUNX1Q01196 453 aa15.11■□□□□ 0.01
USP40-217ENST00000496298 DEFB136Q30KP8 78 aa15.11■□□□□ 0.01
USP40-217ENST00000496298 Q6ZS49 121 aa15.11■□□□□ 0.01
USP40-217ENST00000496298 ZNF491Q8N8L2 437 aa15.11■□□□□ 0.01
USP40-217ENST00000496298 ZNF383Q8NA42 475 aa15.11■□□□□ 0.01
USP40-217ENST00000496298 DPF1Q92782 380 aa15.11■□□□□ 0.01
USP40-217ENST00000496298 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP15.11■□□□□ 0.01
USP40-217ENST00000496298 STUB1Q9UNE7 303 aa15.11■□□□□ 0.01
USP40-217ENST00000496298 FBXO7Q9Y3I1 522 aa15.11■□□□□ 0.01
USP40-217ENST00000496298 NUBP2Q9Y5Y2 271 aa15.11■□□□□ 0.01
USP40-217ENST00000496298 COL7A1Q02388 2944 aa15.11■□□□□ 0.01
USP40-217ENST00000496298 NOTOA8MTQ0 251 aa15.1■□□□□ 0.01
USP40-217ENST00000496298 H7C2Y5 167 aa15.1■□□□□ 0.01
USP40-217ENST00000496298 I3L521 148 aa15.1■□□□□ 0.01
USP40-217ENST00000496298 FCN1O00602 326 aa15.1■□□□□ 0.01
USP40-217ENST00000496298 TFAP2AP05549 437 aa15.1■□□□□ 0.01
USP40-217ENST00000496298 GSTT2P0CG29 244 aa15.1■□□□□ 0.01
USP40-217ENST00000496298 GSTT2BP0CG30 244 aa15.1■□□□□ 0.01
USP40-217ENST00000496298 EGR2P11161 476 aaPredicted RBP15.1■□□□□ 0.01
USP40-217ENST00000496298 PSMB9P28065 219 aa15.1■□□□□ 0.01
USP40-217ENST00000496298 ARL6IP1Q15041 203 aa15.1■□□□□ 0.01
USP40-217ENST00000496298 IGSF11Q5DX21 431 aa15.1■□□□□ 0.01
USP40-217ENST00000496298 TMEM65Q6PI78 240 aa15.1■□□□□ 0.01
USP40-217ENST00000496298 TPRA1Q86W33 373 aa15.1■□□□□ 0.01
USP40-217ENST00000496298 DRAXINQ8NBI3 349 aaPredicted RBP15.1■□□□□ 0.01
USP40-217ENST00000496298 SPDEFO95238 335 aa15.09■□□□□ 0.01
USP40-217ENST00000496298 IGKV1-16P04430 117 aa15.09■□□□□ 0.01
USP40-217ENST00000496298 RAB9AP51151 201 aa15.09■□□□□ 0.01
USP40-217ENST00000496298 LINC00205P59089 165 aa15.09■□□□□ 0.01
USP40-217ENST00000496298 PSG5Q15238 335 aa15.09■□□□□ 0.01
USP40-217ENST00000496298 ZNF773Q6PK81 442 aa15.09■□□□□ 0.01
USP40-217ENST00000496298 PDPNQ86YL7 162 aa15.09■□□□□ 0.01
USP40-217ENST00000496298 TCTEX1D1Q8N7M0 179 aa15.09■□□□□ 0.01
USP40-217ENST00000496298 OR5M8Q8NGP6 311 aa15.09■□□□□ 0.01
USP40-217ENST00000496298 OR10J5Q8NHC4 309 aa15.09■□□□□ 0.01
USP40-217ENST00000496298 CENPOQ9BU64 300 aa15.09■□□□□ 0.01
USP40-217ENST00000496298 ZMAT5Q9UDW3 170 aaKnown RBP15.09■□□□□ 0.01
USP40-217ENST00000496298 VSIG4Q9Y279 399 aa15.09■□□□□ 0.01
USP40-217ENST00000496298 BET1O15155 118 aa15.08■□□□□ 0
USP40-217ENST00000496298 SOX15O60248 233 aa15.08■□□□□ 0
USP40-217ENST00000496298 ZNF562Q6V9R5 426 aa15.08■□□□□ 0
USP40-217ENST00000496298 TSNAXQ99598 290 aaKnown RBP15.08■□□□□ 0
USP40-217ENST00000496298 GNB4Q9HAV0 340 aa15.08■□□□□ 0
USP40-217ENST00000496298 ZNF230Q9UIE0 474 aaPredicted RBP15.08■□□□□ 0
USP40-217ENST00000496298 SSR3Q9UNL2 185 aa15.08■□□□□ 0
USP40-217ENST00000496298 OR8U9P0C7N5 309 aa15.07■□□□□ 0
USP40-217ENST00000496298 AKIRIN2Q53H80 203 aa15.07■□□□□ 0
USP40-217ENST00000496298 OR11H1Q8NG94 326 aa15.07■□□□□ 0
USP40-217ENST00000496298 ATG5Q9H1Y0 275 aa15.07■□□□□ 0
USP40-217ENST00000496298 SDHAF2Q9NX18 166 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms