RNA–Protein interactions for RNA: ENST00000496081.5

HLA-A-208, Transcript of major histocompatibility complex, class I, A, human

Gene HLA-A, Length 1,786 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HLA-A-208	ENST00000496081		A0A1W2PPE3	182 aa		13.48	□□□□□ -0.25
HLA-A-208	ENST00000496081		K7EPK0	472 aa		13.48	□□□□□ -0.25
HLA-A-208	ENST00000496081	RAMP3	O60896	148 aa		13.48	□□□□□ -0.25
HLA-A-208	ENST00000496081	CDKN1A	P38936	164 aa		13.48	□□□□□ -0.25
HLA-A-208	ENST00000496081	RAB7A	P51149	207 aa		13.48	□□□□□ -0.25
HLA-A-208	ENST00000496081	LINC00205	P59089	165 aa		13.48	□□□□□ -0.25
HLA-A-208	ENST00000496081	ZNF841	Q6ZN19	808 aa		13.48	□□□□□ -0.25
HLA-A-208	ENST00000496081	ZNF767P	Q75MW2	155 aa		13.48	□□□□□ -0.25
HLA-A-208	ENST00000496081	FAM71E2	Q8N5Q1	922 aa		13.48	□□□□□ -0.25
HLA-A-208	ENST00000496081	ZNF680	Q8NEM1	530 aa		13.48	□□□□□ -0.25
HLA-A-208	ENST00000496081	OR10A7	Q8NGE5	316 aa		13.48	□□□□□ -0.25
HLA-A-208	ENST00000496081	TCTEX1D2	Q8WW35	142 aa		13.48	□□□□□ -0.25
HLA-A-208	ENST00000496081	ABHD14A	Q9BUJ0	271 aa		13.48	□□□□□ -0.25
HLA-A-208	ENST00000496081	SPTAN1	Q13813	2472 aa	Known RBP	13.47	□□□□□ -0.25
HLA-A-208	ENST00000496081	MSGN1	A6NI15	193 aa		13.47	□□□□□ -0.25
HLA-A-208	ENST00000496081	C17orf98	A8MV24	154 aa		13.47	□□□□□ -0.25
HLA-A-208	ENST00000496081	CFD	P00746	253 aa	Predicted RBP	13.47	□□□□□ -0.25
HLA-A-208	ENST00000496081	RLN2	P04090	185 aa		13.47	□□□□□ -0.25
HLA-A-208	ENST00000496081	LPAR6	P43657	344 aa		13.47	□□□□□ -0.25
HLA-A-208	ENST00000496081	SMCO1	Q147U7	214 aa		13.47	□□□□□ -0.25
HLA-A-208	ENST00000496081	RPL39P5	Q59GN2	51 aa		13.47	□□□□□ -0.25
HLA-A-208	ENST00000496081	OR2B11	Q5JQS5	317 aa		13.47	□□□□□ -0.25
HLA-A-208	ENST00000496081	HEPN1	Q6WQI6	88 aa		13.47	□□□□□ -0.25
HLA-A-208	ENST00000496081	LSM10	Q969L4	123 aa	Known RBP	13.47	□□□□□ -0.25
HLA-A-208	ENST00000496081	GPR146	Q96CH1	333 aa		13.47	□□□□□ -0.25
HLA-A-208	ENST00000496081	GAB2	Q9UQC2	676 aa		13.47	□□□□□ -0.25
HLA-A-208	ENST00000496081	PPIH	O43447	177 aa	Known RBP	13.46	□□□□□ -0.25
HLA-A-208	ENST00000496081	IGKV1-5	P01602	117 aa		13.46	□□□□□ -0.25
HLA-A-208	ENST00000496081	DUT	P33316	252 aa	Known RBP	13.46	□□□□□ -0.25
HLA-A-208	ENST00000496081	SRSF1	Q07955	248 aa	Known RBP eCLIP	13.46	□□□□□ -0.25
HLA-A-208	ENST00000496081	THOC7	Q6I9Y2	204 aa	Known RBP	13.46	□□□□□ -0.25
HLA-A-208	ENST00000496081	C1orf229	Q6ZS94	237 aa	Predicted RBP	13.46	□□□□□ -0.25
HLA-A-208	ENST00000496081	SPAG16	Q8N0X2	631 aa		13.46	□□□□□ -0.25
HLA-A-208	ENST00000496081	RAB1C	Q92928	201 aa		13.46	□□□□□ -0.25
HLA-A-208	ENST00000496081	DOCK11	Q5JSL3	2073 aa		13.46	□□□□□ -0.26
HLA-A-208	ENST00000496081	ST8SIA3	O43173	380 aa		13.45	□□□□□ -0.26
HLA-A-208	ENST00000496081	NDUFS7	O75251	213 aa		13.45	□□□□□ -0.26
HLA-A-208	ENST00000496081	DLX6	P56179	175 aa		13.45	□□□□□ -0.26
HLA-A-208	ENST00000496081	IZUMO4	Q1ZYL8	232 aa		13.45	□□□□□ -0.26
HLA-A-208	ENST00000496081	TMEM155	Q4W5P6	130 aa		13.45	□□□□□ -0.26
HLA-A-208	ENST00000496081	NCR3LG1	Q68D85	454 aa		13.45	□□□□□ -0.26
HLA-A-208	ENST00000496081	ODF3L1	Q8IXM7	274 aa		13.45	□□□□□ -0.26
HLA-A-208	ENST00000496081	TCTEX1D1	Q8N7M0	179 aa		13.45	□□□□□ -0.26
HLA-A-208	ENST00000496081	TIMD4	Q96H15	378 aa		13.45	□□□□□ -0.26
HLA-A-208	ENST00000496081	AQP10	Q96PS8	301 aa		13.45	□□□□□ -0.26
HLA-A-208	ENST00000496081	CHODL	Q9H9P2	273 aa		13.45	□□□□□ -0.26
HLA-A-208	ENST00000496081	FAM212B	Q9NTI7	297 aa	Predicted RBP	13.45	□□□□□ -0.26
HLA-A-208	ENST00000496081	ZFP57	Q9NU63	452 aa		13.45	□□□□□ -0.26
HLA-A-208	ENST00000496081	KLF2	Q9Y5W3	355 aa	Predicted RBP	13.45	□□□□□ -0.26
HLA-A-208	ENST00000496081	POMT1	Q9Y6A1	747 aa		13.45	□□□□□ -0.26
HLA-A-208	ENST00000496081	TRBV23-1	A0A0A0MS06	115 aa		13.45	□□□□□ -0.26
HLA-A-208	ENST00000496081		A0A1B0GU03	582 aa		13.45	□□□□□ -0.26
HLA-A-208	ENST00000496081	KANTR	A0A1W2PQU2	76 aa		13.45	□□□□□ -0.26
HLA-A-208	ENST00000496081		M0R1X1	148 aa		13.45	□□□□□ -0.26
HLA-A-208	ENST00000496081	BCL2L11	O43521	198 aa		13.45	□□□□□ -0.26
HLA-A-208	ENST00000496081	SLC25A6	P12236	298 aa		13.45	□□□□□ -0.26
HLA-A-208	ENST00000496081	EPHA1	P21709	976 aa		13.45	□□□□□ -0.26
HLA-A-208	ENST00000496081	NKX2-1	P43699	371 aa	Predicted RBP	13.45	□□□□□ -0.26
HLA-A-208	ENST00000496081	GNG10	P50151	68 aa		13.45	□□□□□ -0.26
HLA-A-208	ENST00000496081	AKR1C2	P52895	323 aa		13.45	□□□□□ -0.26
HLA-A-208	ENST00000496081	ZNF816	Q0VGE8	651 aa	Predicted RBP	13.45	□□□□□ -0.26
HLA-A-208	ENST00000496081	EXOSC2	Q13868	293 aa	Known RBP	13.45	□□□□□ -0.26
HLA-A-208	ENST00000496081	CXorf66	Q5JRM2	361 aa	Predicted RBP	13.45	□□□□□ -0.26
HLA-A-208	ENST00000496081		Q6ZRM9	215 aa		13.45	□□□□□ -0.26
HLA-A-208	ENST00000496081	SLC25A48	Q6ZT89	311 aa	Known RBP	13.45	□□□□□ -0.26
HLA-A-208	ENST00000496081	RNASE11	Q8TAA1	199 aa	Known RBP	13.45	□□□□□ -0.26
HLA-A-208	ENST00000496081	SAA2-SAA4	A0A096LPE2	208 aa		13.44	□□□□□ -0.26
HLA-A-208	ENST00000496081	RAB29	O14966	203 aa		13.44	□□□□□ -0.26
HLA-A-208	ENST00000496081	PITX3	O75364	302 aa		13.44	□□□□□ -0.26
HLA-A-208	ENST00000496081	S1PR2	O95136	353 aa		13.44	□□□□□ -0.26
HLA-A-208	ENST00000496081	GOSR1	O95249	250 aa		13.44	□□□□□ -0.26
HLA-A-208	ENST00000496081	SAA2	P0DJI9	122 aa	Predicted RBP	13.44	□□□□□ -0.26
HLA-A-208	ENST00000496081	HKR1	P10072	659 aa		13.44	□□□□□ -0.26
HLA-A-208	ENST00000496081	NUP62	P37198	522 aa	Predicted RBP	13.44	□□□□□ -0.26
HLA-A-208	ENST00000496081	NDUFA5	Q16718	116 aa		13.44	□□□□□ -0.26
HLA-A-208	ENST00000496081	SLC51B	Q86UW2	128 aa		13.44	□□□□□ -0.26
HLA-A-208	ENST00000496081	ZNF436-AS1	Q8NC38	126 aa	Predicted RBP	13.44	□□□□□ -0.26
HLA-A-208	ENST00000496081	DMBX1	Q8NFW5	382 aa		13.44	□□□□□ -0.26
HLA-A-208	ENST00000496081	ZNF251	Q9BRH9	671 aa		13.44	□□□□□ -0.26
HLA-A-208	ENST00000496081	MIOX	Q9UGB7	285 aa		13.44	□□□□□ -0.26
HLA-A-208	ENST00000496081	RCL1	Q9Y2P8	373 aa	Known RBP	13.44	□□□□□ -0.26
HLA-A-208	ENST00000496081		E5RGE8	158 aa		13.43	□□□□□ -0.26
HLA-A-208	ENST00000496081	GPR37	O15354	613 aa		13.43	□□□□□ -0.26
HLA-A-208	ENST00000496081	F12	P00748	615 aa	Predicted RBP	13.43	□□□□□ -0.26
HLA-A-208	ENST00000496081	IFNA7	P01567	189 aa		13.43	□□□□□ -0.26
HLA-A-208	ENST00000496081	TMEM33	P57088	247 aa		13.43	□□□□□ -0.26
HLA-A-208	ENST00000496081	ID3	Q02535	119 aa		13.43	□□□□□ -0.26
HLA-A-208	ENST00000496081	MALRD1	Q5VYJ5	2156 aa		13.43	□□□□□ -0.26
HLA-A-208	ENST00000496081	LYG1	Q8N1E2	194 aa		13.43	□□□□□ -0.26
HLA-A-208	ENST00000496081	OR8B3	Q8NGG8	313 aa		13.43	□□□□□ -0.26
HLA-A-208	ENST00000496081	NEIL1	Q96FI4	390 aa	Predicted RBP	13.43	□□□□□ -0.26
HLA-A-208	ENST00000496081	OR8B2	Q96RD0	313 aa		13.43	□□□□□ -0.26
HLA-A-208	ENST00000496081	COL12A1	Q99715	3063 aa		13.43	□□□□□ -0.26
HLA-A-208	ENST00000496081	NSG2	Q9Y328	171 aa		13.43	□□□□□ -0.26
HLA-A-208	ENST00000496081	UBR5	O95071	2799 aa	Predicted RBP	13.43	□□□□□ -0.26
HLA-A-208	ENST00000496081	ATP6V1G1	O75348	118 aa		13.43	□□□□□ -0.26
HLA-A-208	ENST00000496081	RPL12	P30050	165 aa	Known RBP	13.43	□□□□□ -0.26
HLA-A-208	ENST00000496081	POLR2G	P62487	172 aa	Known RBP eCLIP	13.43	□□□□□ -0.26
HLA-A-208	ENST00000496081	WDR25	Q64LD2	544 aa	Predicted RBP	13.43	□□□□□ -0.26
HLA-A-208	ENST00000496081	C11orf42	Q8N5U0	333 aa		13.43	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms